MD03G1253000.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
34014934 .. 34015737
804 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1253000.v1.1.491

Sequence Viewer

Length: 804 bp
ATGGGTTCAAAATCAAACCTCGCAAGCATTGAAGATAGGATCAGTGAATTACCTGAGACGATCCTTTGTCATATACTTTCTTTCCTTGAAACGGTACATGCTGTGAGAACCACCGTTTTGTCTACAAGATGGAACAAAATATGGACTAAAGTTCCTAATCTACACTTTGGTTATATTCCAAATTTTTGTCCGGAATATGAAGATGAAGGTGAAGATGCATGTCACAATCATTTTATGACATTCGTTGATCGTGTACTTTTCTTTCGTGACTCATCAAAAATCCAAAACTTTACTCTTAGTTGTATTGATCTATATGATTTCACTCGAATTGATGGTTGGCTTTGCACTGCCACCAGGCATAATGTTGTTAAACTTGATTTTCATCTTCTTCATATTTATAAGTATAACCGCAGGGATACTTTTGAGTTTCCTCGAAGCCTTTTCAAGTGCAAAACATTGGAGGTTTTGAAGCTTTCTTCAAATTGTACTACTTACTATCCTCCTACATCAGGGTGTTTTCCGAGTCTCAAATTCCTCCATATTACACTTCATACTTCTCTTGACAACTCTGTCGAGCAGCTCATTTCTTGTTGCCCTCTACTTGAAGGGTTGACTATTGATGGATTTGTTGGCACTCGTGGAGATTCTGTGGATGTTAATTTCAACATTTCTGCGTCTAAATTGAAGTCTTTGACAATAAGGTTGTCAGCTTGTCCCACAAGTCCGTACAATGTTTTAATTATTGCTCCAAATCTGAAAAGCATTAATCTTAGCCAGAATACTATGGCATATTATTTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

268

Amino Acids

30.61

Weight (kDa)

6.78

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 54 3.2e-07 F-box domain
LRR_At5g56370 PF24758 110 - 259 6.7e-13 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 399
AasI GACNNNNNNGTC 1 cut(s) 569
AccI GTMKAC 1 cut(s) 122
AccIII TCCGGA 1 cut(s) 190
AciI CCGC 1 cut(s) 409
AclWI GGATC 2 cut(s) 47, 55
AcsI RAATTY 2 cut(s) 181, 530
AfaI GTAC 4 cut(s) 96, 255, 487, 728
AfiI CCNNNNNNNGG 2 cut(s) 91, 509
AgsI TTSAA 9 cut(s) 9, 32, 89, 445, 469, 480, 605, 664, 685
AjnI CCWGG 1 cut(s) 353
AjuI GAANNNNNNNTTGG 2 cut(s) 319, 351
AluBI AGCT 3 cut(s) 472, 580, 710
AluI AGCT 3 cut(s) 472, 580, 710
Alw26I GTCTC 2 cut(s) 50, 530
AlwI GGATC 2 cut(s) 47, 55
Aor13HI TCCGGA 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 577
ApoI RAATTY 2 cut(s) 181, 530
AseI ATTAAT 1 cut(s) 765
AsuHPI GGTGA 1 cut(s) 221
BauI CACGAG 1 cut(s) 636
BbvI GCAGC 1 cut(s) 589
BccI CCATC 3 cut(s) 123, 326, 614
BciT130I CCWGG 1 cut(s) 355
BciVI GTATCC 1 cut(s) 409
BcoDI GTCTC 2 cut(s) 50, 530
BfaI CTAG 1 cut(s) 802
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 1 cut(s) 578
BlsI GCNGC 1 cut(s) 579
Bme1390I CCNGG 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 355
BmsI GCATC 1 cut(s) 205
BsaBI GATNNNNATC 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 633, 663
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 509
Bse8I GATNNNNATC 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 190
BseBI CCWGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 658
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 2 cut(s) 91, 509
BseMII CTCAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 589
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 699
BslI CCNNNNNNNGG 2 cut(s) 91, 509
BsmAI GTCTC 2 cut(s) 50, 530
BsmBI CGTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 699
Bsp13I TCCGGA 1 cut(s) 190
Bsp143I GATC 4 cut(s) 39, 60, 247, 307
BspACI CCGC 1 cut(s) 409
BspCNI CTCAG 1 cut(s) 46
BspEI TCCGGA 1 cut(s) 190
BspPI GGATC 2 cut(s) 47, 55
BssMI GATC 4 cut(s) 39, 60, 247, 307
BssSI CACGAG 1 cut(s) 636
Bst2BI CACGAG 1 cut(s) 636
Bst2UI CCWGG 1 cut(s) 355
Bst4CI ACNGT 2 cut(s) 94, 115
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 3 cut(s) 54, 296, 770
BstENI CCTNNNNNAGG 1 cut(s) 507
BstF5I GGATG 1 cut(s) 658
BstKTI GATC 4 cut(s) 42, 63, 250, 310
BstMAI GTCTC 2 cut(s) 50, 530
BstMBI GATC 4 cut(s) 39, 60, 247, 307
BstNI CCWGG 1 cut(s) 355
BstNSI RCATGY 2 cut(s) 101, 222
BstSCI CCNGG 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 589
BsuI GTATCC 1 cut(s) 409
BtsCI GGATG 1 cut(s) 658
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 2 cut(s) 49, 345
Cac8I GCNNGC 1 cut(s) 25
CseI GACGC 1 cut(s) 663
Csp6I GTAC 4 cut(s) 95, 254, 486, 727
CviAII CATG 2 cut(s) 98, 219
CviJI RGCY 6 cut(s) 340, 438, 472, 580, 710, 774
CviKI_1 RGCY 6 cut(s) 340, 438, 472, 580, 710, 774
CviQI GTAC 4 cut(s) 95, 254, 486, 727
DdeI CTNAG 3 cut(s) 54, 296, 770
DpnI GATC 4 cut(s) 41, 62, 249, 309
DpnII GATC 4 cut(s) 39, 60, 247, 307
DrdI GACNNNNNNGTC 1 cut(s) 569
DseDI GACNNNNNNGTC 1 cut(s) 569
EcoNI CCTNNNNNAGG 1 cut(s) 507
EcoRII CCWGG 1 cut(s) 353
EcoT22I ATGCAT 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 50
FaeI CATG 2 cut(s) 101, 222
FaqI GGGAC 1 cut(s) 699
FatI CATG 2 cut(s) 97, 218
FblI GTMKAC 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 578
FokI GGATG 1 cut(s) 665
Fsp4HI GCNGC 1 cut(s) 578
FspBI CTAG 1 cut(s) 802
GluI GCNGC 1 cut(s) 578
HapII CCGG 1 cut(s) 191
HgaI GACGC 1 cut(s) 663
Hin1II CATG 2 cut(s) 101, 222
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 3 cut(s) 269, 523, 644
HpaII CCGG 1 cut(s) 191
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 3 cut(s) 123, 254, 612
Hpy188I TCNGA 2 cut(s) 522, 756
Hpy188III TCNNGA 3 cut(s) 191, 266, 560
Hpy8I GTNNAC 3 cut(s) 123, 254, 612
HpyAV CCTTC 2 cut(s) 200, 599
HpyCH4III ACNGT 2 cut(s) 94, 115
HpyCH4V TGCA 3 cut(s) 218, 345, 450
HpyF3I CTNAG 3 cut(s) 54, 296, 770
Hsp92II CATG 2 cut(s) 101, 222
Kpn2I TCCGGA 1 cut(s) 190
Kzo9I GATC 4 cut(s) 39, 60, 247, 307
LmnI GCTCC 1 cut(s) 751
LpnPI CCDG 7 cut(s) 66, 204, 340, 367, 397, 495, 788
Lsp1109I GCAGC 1 cut(s) 589
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 802
MaeIII GTNAC 2 cut(s) 221, 266
MalI GATC 4 cut(s) 41, 62, 249, 309
MboI GATC 4 cut(s) 39, 60, 247, 307
MboII GAAGA 6 cut(s) 44, 212, 224, 377, 380, 468
MluCI AATT 8 cut(s) 47, 181, 327, 481, 530, 658, 680, 738
MlyI GAGTC 2 cut(s) 263, 532
MnlI CCTC 6 cut(s) 29, 441, 454, 510, 545, 606
Mph1103I ATGCAT 1 cut(s) 220
MroI TCCGGA 1 cut(s) 190
MseI TTAA 4 cut(s) 369, 657, 737, 765
MslI CAYNNNNRTG 1 cut(s) 511
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 355
MvaI CCWGG 1 cut(s) 355
NdeII GATC 4 cut(s) 39, 60, 247, 307
NlaIII CATG 2 cut(s) 101, 222
NmuCI GTSAC 2 cut(s) 221, 266
NsiI ATGCAT 1 cut(s) 220
NspI RCATGY 2 cut(s) 101, 222
PfeI GAWTC 1 cut(s) 644
PkrI GCNGC 1 cut(s) 579
PleI GAGTC 2 cut(s) 263, 531
PpsI GAGTC 2 cut(s) 263, 531
PshBI ATTAAT 1 cut(s) 765
PsiI TTATAA 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 353
PspGI CCWGG 1 cut(s) 353
RsaI GTAC 4 cut(s) 96, 255, 487, 728
RsaNI GTAC 4 cut(s) 95, 254, 486, 727
RseI CAYNNNNRTG 1 cut(s) 511
SaqAI TTAA 4 cut(s) 369, 657, 737, 765
SatI GCNGC 1 cut(s) 578
Sau3AI GATC 4 cut(s) 39, 60, 247, 307
SchI GAGTC 2 cut(s) 263, 532
ScrFI CCNGG 1 cut(s) 355
SetI ASST 8 cut(s) 21, 55, 211, 465, 474, 582, 704, 712
SfaNI GCATC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 511
Sse9I AATT 8 cut(s) 47, 181, 327, 481, 530, 658, 680, 738
SsiI CCGC 1 cut(s) 409
SspMI CTAG 1 cut(s) 802
StyD4I CCNGG 1 cut(s) 353
TaaI ACNGT 2 cut(s) 94, 115
TaqI TCGA 3 cut(s) 325, 433, 573
TasI AATT 8 cut(s) 47, 181, 327, 481, 530, 658, 680, 738
TatI WGTACW 2 cut(s) 253, 485
TfiI GAWTC 1 cut(s) 644
Tru1I TTAA 4 cut(s) 369, 657, 737, 765
Tru9I TTAA 4 cut(s) 369, 657, 737, 765
TscAI CASTG 2 cut(s) 49, 352
TseFI GTSAC 2 cut(s) 221, 266
TseI GCWGC 1 cut(s) 577
Tsp45I GTSAC 2 cut(s) 221, 266
TspDTI ATGAA 5 cut(s) 213, 219, 371, 380, 539
TspGWI ACGGA 1 cut(s) 714
TspRI CASTG 2 cut(s) 49, 352
VspI ATTAAT 1 cut(s) 765
XagI CCTNNNNNAGG 1 cut(s) 507
XapI RAATTY 2 cut(s) 181, 530
XceI RCATGY 2 cut(s) 101, 222
XmiI GTMKAC 1 cut(s) 122
XspI CTAG 1 cut(s) 802
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.