Rorug05G0328000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000079
Physical Location & Seq
Reverse (-)
39471621 .. 39473909
2289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0328000.1

Sequence Viewer

Length: 1638 bp
ATGGCATCTATTAGTGAATCACGCTCTCGTACCGGGCTGGTGCGGGTAATCCTACAGGACAGGAGAACCAGGACGGTGATCGTGCGGTTAGAGCAATTGTTAGAGTTTTACAACAATTGTTTCGGATTTGAATTTATCATTCAAAATCCGGGGCGTGACACAAAACAAGCATGGCGAATCTTACAGAATCCTACTTCTCTTATTGCCTGTATATACAAGGCGAAATACTTCCCGAATCATTCCTTTTGGGAGGCTTTACCTCATGATTCGCCTTCTTACTCGTGGAGAAGTATTTTCTCCACCCGAGAGCTCCTTCAAGGAGGCTGTTACTGGCAGGTGGGTAATGGTAGAGAACTGGACATCTTCTCGGATAATTGGGTTGTCGCATTGCCTCTGGGGAGACCTACTAATTTGGGTACGACGGGGGAGGTTAGAAAAGTCAGCGAGCTTATGCTCGAAACTGGGAGTTGGAATGTTCCACTGTTAAATGAGTTTTTTTCGGTGGAGGAAGCAGAAGTGATTGCTGCAATTCCATTGAGTCGACGAGATGTGCCGGATAGGTTATGTTGGAAACTCTCAAGGGATGGGAGGTTTTCAGTCAAGACTGCTTATCGGTCGGCTTTTTTGAACTCTTCTAGTTACAATCCTTTGCAGCTCCCAGTTGGGATGGTTTTTTGGAAGAAGATTTGGAAAGTGGTTATTCCAAACAAGGCTAAAATACATATCTGGCTTGTGTGTTTGGATATTCTTCCTTCTTTGGGCAGCTTGGCTTCAAAGAGGGTGGTATTGGATTCGCACAGGTGTGTGTTGTGTGAGACTCAACAAGAAACAACCCTTCATTTATGTCGGGATTGTGTTTTTACTCAAGCTGTGCTCCACAAGAATGCTTTACTAAAGCAGGTTTGCTATAACCCTAGTAATATGGCTGACGATGTTCTTACTTGGTTGGCTCAGTGTGTACAACAGTTGTCGTTACCTCAGTTGGGAGAACTTCTCTTTTCATTATGGGGAATCTGGAAGGAGAGGAACGATCGGACATGGAATCACAAGCAGCGGGCAGCCGGGGATGTTAGTGTGGGAATTGGGTCTAGACTGCAGGAATTTAGGTTCCACAATTTGCAGCCTTCTCGGCCTAGAGGTCTGCGAAGGGCAGTGTGGCGAGCTCCACCGTTTGGTCTAGTAAAGATTAACATTGATGGTTCTTTTCATCATGCTACTCGGAAGGGTGGACTGGGTTTTGTGATTAGGGATGAGCAGGGGATCATGGTGGGCGGTGGCGCTAGTCCATTGACTGGTTTGATATCGCCGGAGCATGCAGAGATTTTGGCGTGTAAAGCTGCACTTGAGTTTACACTGGCGCATGGTTTTGGACCTATAATCTTGGAAACTGATGCTATGGATGTCCAACGACAACTCATCTCTGAGTTTTCTGCTAACACATCCTTGCTTGGCCGCCTATATGATGATGTAAGGGCTATGGGAGCAGTTCAGGATATTCTTCATGTGAGTCATGTGGGTAGACAAGGAAACTCGGTGGCCCATTTGTTGGCTACCTATGCTTGCTCTATTAGGCAGGCTGAGTTCTTTTTTTCGGTTCCAGCGTTTTTACAAGCTGCACTTGCAGCTGATGTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

545

Amino Acids

61.36

Weight (kDa)

8.99

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 198 - 290 1.1e-11 zinc-binding in reverse transcriptase
RVT_3 PF13456 397 - 520 1.8e-24 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 325
Acc36I ACCTGC 2 cut(s) 325, 889
AccB7I CCANNNNNTGG 3 cut(s) 1172, 1292, 1546
AccI GTMKAC 2 cut(s) 541, 1519
AciI CCGC 5 cut(s) 43, 85, 1054, 1272, 1453
AclWI GGATC 1 cut(s) 1268
AcoI YGGCCR 1 cut(s) 1450
AcsI RAATTY 2 cut(s) 131, 1100
AfaI GTAC 3 cut(s) 31, 418, 960
AfiI CCNNNNNNNGG 5 cut(s) 758, 983, 1172, 1292, 1546
AgsI TTSAA 5 cut(s) 131, 143, 317, 628, 774
AjnI CCWGG 1 cut(s) 68
AleI CACNNNNGTG 1 cut(s) 801
AloI GAACNNNNNNTCC 2 cut(s) 1091, 1123
AluBI AGCT 9 cut(s) 310, 448, 655, 765, 869, 1163, 1337, 1613, 1625
AluI AGCT 9 cut(s) 310, 448, 655, 765, 869, 1163, 1337, 1613, 1625
Alw21I GWGCWC 3 cut(s) 312, 876, 1165
Alw26I GTCTC 2 cut(s) 394, 809
AlwI GGATC 1 cut(s) 1268
Ama87I CYCGRG 1 cut(s) 303
AoxI GGCC 3 cut(s) 1130, 1450, 1536
ApeKI GCWGC 9 cut(s) 524, 652, 762, 1051, 1058, 1120, 1337, 1613, 1622
ApoI RAATTY 2 cut(s) 131, 1100
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 2 cut(s) 1280, 1360
AspS9I GGNCC 2 cut(s) 1370, 1537
AsuC2I CCSGG 3 cut(s) 34, 150, 1063
AsuHPI GGTGA 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 303
AvaII GGWCC 1 cut(s) 1370
BanII GRGCYC 2 cut(s) 312, 1165
BauI CACGAG 1 cut(s) 280
Bbv12I GWGCWC 3 cut(s) 312, 876, 1165
BbvI GCAGC 9 cut(s) 511, 664, 774, 1063, 1070, 1132, 1324, 1600, 1634
BccI CCATC 3 cut(s) 578, 661, 1190
BcgI CGANNNNNNTGC 2 cut(s) 1109, 1143
BciT130I CCWGG 1 cut(s) 70
BcnI CCSGG 3 cut(s) 34, 150, 1063
BcoDI GTCTC 2 cut(s) 394, 809
BfaI CTAG 6 cut(s) 636, 915, 1089, 1134, 1178, 1281
BfmI CTRYAG 2 cut(s) 53, 1094
BfoI RGCGCY 1 cut(s) 1281
BfuAI ACCTGC 2 cut(s) 325, 889
BglI GCCNNNNNGGC 1 cut(s) 1129
Bme1390I CCNGG 4 cut(s) 34, 70, 150, 1063
Bme18I GGWCC 1 cut(s) 1370
BmeT110I CYCGRG 1 cut(s) 303
BmgT120I GGNCC 2 cut(s) 1370, 1537
BmiI GGNNCC 2 cut(s) 1109, 1596
BmrFI CCNGG 4 cut(s) 34, 70, 150, 1063
BmrI ACTGGG 3 cut(s) 471, 653, 1241
BmsI GCATC 2 cut(s) 14, 1381
BmuI ACTGGG 3 cut(s) 471, 653, 1241
BplI GAGNNNNNCTC 2 cut(s) 978, 1010
BpuEI CTTGAG 3 cut(s) 562, 849, 1364
BpuMI CCSGG 3 cut(s) 34, 150, 1063
BsaI GGTCTC 1 cut(s) 394
BsaJI CCNNGG 2 cut(s) 149, 1062
Bsc4I CCNNNNNNNGG 5 cut(s) 758, 983, 1172, 1292, 1546
Bse1I ACTGG 7 cut(s) 335, 360, 466, 659, 1236, 1297, 1359
Bse3DI GCAATG 1 cut(s) 386
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 149, 1062
BseGI GGATG 6 cut(s) 589, 672, 1072, 1255, 1405, 1439
BseLI CCNNNNNNNGG 5 cut(s) 758, 983, 1172, 1292, 1546
BseMI GCAATG 1 cut(s) 386
BseMII CTCAG 4 cut(s) 965, 992, 1413, 1569
BseNI ACTGG 7 cut(s) 335, 360, 466, 659, 1236, 1297, 1359
BseXI GCAGC 9 cut(s) 511, 664, 774, 1063, 1070, 1132, 1324, 1600, 1634
BsgI GTGCAG 2 cut(s) 1323, 1599
Bsh1285I CGRYCG 2 cut(s) 617, 1033
BshFI GGCC 3 cut(s) 1132, 1452, 1538
BsiEI CGRYCG 2 cut(s) 617, 1033
BsiHKAI GWGCWC 3 cut(s) 312, 876, 1165
BsiHKCI CYCGRG 1 cut(s) 303
BsiSI CCGG 5 cut(s) 33, 149, 554, 1062, 1307
BslI CCNNNNNNNGG 5 cut(s) 758, 983, 1172, 1292, 1546
BsmAI GTCTC 2 cut(s) 394, 809
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 3 cut(s) 1132, 1452, 1538
Bso31I GGTCTC 1 cut(s) 394
BsoBI CYCGRG 1 cut(s) 303
Bsp1286I GDGCHC 3 cut(s) 312, 876, 1165
Bsp1407I TGTACA 1 cut(s) 958
Bsp143I GATC 3 cut(s) 78, 1030, 1260
BspACI CCGC 5 cut(s) 43, 85, 1054, 1272, 1453
BspANI GGCC 3 cut(s) 1132, 1452, 1538
BspCNI CTCAG 4 cut(s) 964, 991, 1414, 1570
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 2 cut(s) 1109, 1596
BspMAI CTGCAG 1 cut(s) 1098
BspMI ACCTGC 2 cut(s) 325, 889
BspPI GGATC 1 cut(s) 1268
BspTNI GGTCTC 1 cut(s) 394
BsrDI GCAATG 1 cut(s) 386
BsrGI TGTACA 1 cut(s) 958
BsrI ACTGG 7 cut(s) 335, 360, 466, 659, 1236, 1297, 1359
BssECI CCNNGG 2 cut(s) 149, 1062
BssMI GATC 3 cut(s) 78, 1030, 1260
BssSI CACGAG 1 cut(s) 280
Bst2BI CACGAG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 4 cut(s) 76, 483, 966, 1170
Bst6I CTCTTC 1 cut(s) 637
BstAUI TGTACA 1 cut(s) 958
BstC8I GCNNGC 6 cut(s) 446, 1056, 1161, 1314, 1561, 1575
BstDEI CTNAG 4 cut(s) 951, 978, 1422, 1578
BstF5I GGATG 6 cut(s) 589, 672, 1072, 1255, 1405, 1439
BstH2I RGCGCY 1 cut(s) 1281
BstHHI GCGC 2 cut(s) 1280, 1360
BstKTI GATC 3 cut(s) 81, 1033, 1263
BstMAI GTCTC 2 cut(s) 394, 809
BstMBI GATC 3 cut(s) 78, 1030, 1260
BstMCI CGRYCG 2 cut(s) 617, 1033
BstMWI GCNNNNNNNGC 7 cut(s) 91, 1129, 1334, 1481, 1556, 1619, 1622
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 1316
BstSCI CCNGG 4 cut(s) 32, 68, 148, 1061
BstSFI CTRYAG 2 cut(s) 53, 1094
BstV1I GCAGC 9 cut(s) 511, 664, 774, 1063, 1070, 1132, 1324, 1600, 1634
BsuRI GGCC 3 cut(s) 1132, 1452, 1538
BtsCI GGATG 6 cut(s) 589, 672, 1072, 1255, 1405, 1439
BtsI GCAGTG 1 cut(s) 1158
BtsIMutI CAGTG 4 cut(s) 479, 959, 1158, 1352
BveI ACCTGC 2 cut(s) 325, 889
Cac8I GCNNGC 6 cut(s) 446, 1056, 1161, 1314, 1561, 1575
CciI TCATGA 1 cut(s) 262
CfoI GCGC 2 cut(s) 1280, 1360
Cfr13I GGNCC 2 cut(s) 1370, 1537
Csp6I GTAC 3 cut(s) 30, 417, 959
CspCI CAANNNNNGTGG 2 cut(s) 762, 797
CviAII CATG 9 cut(s) 171, 263, 1038, 1211, 1264, 1313, 1361, 1502, 1511
CviQI GTAC 3 cut(s) 30, 417, 959
DdeI CTNAG 4 cut(s) 951, 978, 1422, 1578
DpnI GATC 3 cut(s) 80, 1032, 1262
DpnII GATC 3 cut(s) 78, 1030, 1260
EaeI YGGCCR 1 cut(s) 1450
Eam1104I CTCTTC 1 cut(s) 637
EarI CTCTTC 1 cut(s) 637
Ecl136II GAGCTC 2 cut(s) 310, 1163
Eco24I GRGCYC 2 cut(s) 312, 1165
Eco31I GGTCTC 1 cut(s) 394
Eco32I GATATC 1 cut(s) 1302
Eco47I GGWCC 1 cut(s) 1370
Eco53kI GAGCTC 2 cut(s) 310, 1163
Eco88I CYCGRG 1 cut(s) 303
EcoICRI GAGCTC 2 cut(s) 310, 1163
EcoRII CCWGG 1 cut(s) 68
EcoRV GATATC 1 cut(s) 1302
EcoT38I GRGCYC 2 cut(s) 312, 1165
FaeI CATG 9 cut(s) 174, 266, 1041, 1214, 1267, 1316, 1364, 1505, 1514
FalI AAGNNNNNCTT 4 cut(s) 1326, 1358, 1602, 1634
FatI CATG 9 cut(s) 170, 262, 1037, 1210, 1263, 1312, 1360, 1501, 1510
FauI CCCGC 2 cut(s) 36, 1047
FblI GTMKAC 2 cut(s) 541, 1519
FokI GGATG 6 cut(s) 596, 679, 1079, 1262, 1412, 1426
FriOI GRGCYC 2 cut(s) 312, 1165
FspBI CTAG 6 cut(s) 636, 915, 1089, 1134, 1178, 1281
GlaI GCGC 2 cut(s) 1279, 1359
HaeII RGCGCY 1 cut(s) 1281
HaeIII GGCC 3 cut(s) 1132, 1452, 1538
HapII CCGG 5 cut(s) 33, 149, 554, 1062, 1307
HhaI GCGC 2 cut(s) 1280, 1360
Hin1II CATG 9 cut(s) 174, 266, 1041, 1214, 1267, 1316, 1364, 1505, 1514
Hin6I GCGC 2 cut(s) 1278, 1358
HinP1I GCGC 2 cut(s) 1278, 1358
HincII GTYRAC 1 cut(s) 542
HindII GTYRAC 1 cut(s) 542
HpaII CCGG 5 cut(s) 33, 149, 554, 1062, 1307
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 5 cut(s) 542, 959, 1229, 1350, 1520
Hpy188I TCNGA 5 cut(s) 125, 370, 1035, 1221, 1423
Hpy188III TCNNGA 7 cut(s) 232, 263, 601, 848, 1015, 1089, 1490
Hpy8I GTNNAC 5 cut(s) 542, 959, 1229, 1350, 1520
Hpy99I CGWCG 2 cut(s) 424, 546
HpyAV CCTTC 8 cut(s) 282, 323, 762, 845, 1012, 1134, 1140, 1216
HpyCH4III ACNGT 4 cut(s) 76, 483, 966, 1170
HpyCH4V TGCA 8 cut(s) 527, 652, 1096, 1120, 1316, 1340, 1616, 1622
HpyF10VI GCNNNNNNNGC 7 cut(s) 91, 1129, 1334, 1481, 1556, 1619, 1622
HpyF3I CTNAG 4 cut(s) 951, 978, 1422, 1578
Hsp92II CATG 9 cut(s) 174, 266, 1041, 1214, 1267, 1316, 1364, 1505, 1514
HspAI GCGC 2 cut(s) 1278, 1358
Kzo9I GATC 3 cut(s) 78, 1030, 1260
LmnI GCTCC 6 cut(s) 315, 660, 879, 1168, 1309, 1481
Lsp1109I GCAGC 9 cut(s) 511, 664, 774, 1063, 1070, 1132, 1324, 1600, 1634
LweI GCATC 2 cut(s) 14, 1381
MaeI CTAG 6 cut(s) 636, 915, 1089, 1134, 1178, 1281
MaeIII GTNAC 4 cut(s) 155, 326, 638, 972
MalI GATC 3 cut(s) 80, 1032, 1262
MboI GATC 3 cut(s) 78, 1030, 1260
MboII GAAGA 6 cut(s) 355, 624, 691, 694, 740, 1490
MfeI CAATTG 2 cut(s) 95, 115
MhlI GDGCHC 3 cut(s) 312, 876, 1165
MluCI AATT 9 cut(s) 95, 115, 131, 373, 409, 528, 1080, 1100, 1114
MlyI GAGTC 3 cut(s) 547, 811, 1516
MmeI TCCRAC 3 cut(s) 449, 548, 1429
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 2 cut(s) 485, 1188
MslI CAYNNNNRTG 2 cut(s) 801, 882
MspA1I CMGCKG 2 cut(s) 1054, 1625
MspI CCGG 5 cut(s) 33, 149, 554, 1062, 1307
MspR9I CCNGG 4 cut(s) 34, 70, 150, 1063
MunI CAATTG 2 cut(s) 95, 115
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 7 cut(s) 91, 1129, 1334, 1481, 1556, 1619, 1622
NciI CCSGG 3 cut(s) 34, 150, 1063
NdeII GATC 3 cut(s) 78, 1030, 1260
NlaIII CATG 9 cut(s) 174, 266, 1041, 1214, 1267, 1316, 1364, 1505, 1514
NlaIV GGNNCC 2 cut(s) 1109, 1596
NmeAIII GCCGAG 1 cut(s) 1108
NmuCI GTSAC 1 cut(s) 155
NspI RCATGY 1 cut(s) 1316
OliI CACNNNNGTG 1 cut(s) 801
PaeI GCATGC 1 cut(s) 1316
PagI TCATGA 1 cut(s) 262
PaqCI CACCTGC 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 1598
PctI GAATGC 1 cut(s) 889
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 8 cut(s) 17, 177, 187, 235, 266, 791, 1011, 1042
PflMI CCANNNNNTGG 3 cut(s) 1172, 1292, 1546
Ple19I CGATCG 1 cut(s) 1033
PleI GAGTC 3 cut(s) 546, 811, 1515
PpsI GAGTC 3 cut(s) 546, 811, 1515
Psp124BI GAGCTC 2 cut(s) 312, 1165
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 1109, 1596
PspPI GGNCC 2 cut(s) 1370, 1537
PstI CTGCAG 1 cut(s) 1098
PvuI CGATCG 1 cut(s) 1033
PvuII CAGCTG 1 cut(s) 1625
RsaI GTAC 3 cut(s) 31, 418, 960
RsaNI GTAC 3 cut(s) 30, 417, 959
RseI CAYNNNNRTG 2 cut(s) 801, 882
SacI GAGCTC 2 cut(s) 312, 1165
SalI GTCGAC 1 cut(s) 540
SaqAI TTAA 2 cut(s) 485, 1188
Sau3AI GATC 3 cut(s) 78, 1030, 1260
Sau96I GGNCC 2 cut(s) 1370, 1537
SchI GAGTC 3 cut(s) 547, 811, 1516
ScrFI CCNGG 4 cut(s) 34, 70, 150, 1063
SduI GDGCHC 3 cut(s) 312, 876, 1165
SfaNI GCATC 2 cut(s) 14, 1381
SfcI CTRYAG 2 cut(s) 53, 1094
SinI GGWCC 1 cut(s) 1370
SmiMI CAYNNNNRTG 2 cut(s) 801, 882
SmlI CTYRAG 3 cut(s) 577, 864, 1343
SmoI CTYRAG 3 cut(s) 577, 864, 1343
SphI GCATGC 1 cut(s) 1316
Sse9I AATT 9 cut(s) 95, 115, 131, 373, 409, 528, 1080, 1100, 1114
SsiI CCGC 5 cut(s) 43, 85, 1054, 1272, 1453
SspMI CTAG 6 cut(s) 636, 915, 1089, 1134, 1178, 1281
SstI GAGCTC 2 cut(s) 312, 1165
StyD4I CCNGG 4 cut(s) 32, 68, 148, 1061
TaaI ACNGT 4 cut(s) 76, 483, 966, 1170
TaqI TCGA 2 cut(s) 456, 541
TaqII GACCGA 1 cut(s) 603
TasI AATT 9 cut(s) 95, 115, 131, 373, 409, 528, 1080, 1100, 1114
TatI WGTACW 1 cut(s) 958
TauI GCSGC 1 cut(s) 1455
TfiI GAWTC 8 cut(s) 17, 177, 187, 235, 266, 791, 1011, 1042
Tru1I TTAA 2 cut(s) 485, 1188
Tru9I TTAA 2 cut(s) 485, 1188
TscAI CASTG 4 cut(s) 486, 959, 1158, 1359
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 9 cut(s) 524, 652, 762, 1051, 1058, 1120, 1337, 1613, 1622
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 4 cut(s) 827, 990, 1196, 1490
TspRI CASTG 4 cut(s) 486, 959, 1158, 1359
Van91I CCANNNNNTGG 3 cut(s) 1172, 1292, 1546
VpaK11BI GGWCC 1 cut(s) 1370
XapI RAATTY 2 cut(s) 131, 1100
XbaI TCTAGA 1 cut(s) 1088
XceI RCATGY 1 cut(s) 1316
XmiI GTMKAC 2 cut(s) 541, 1519
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 6 cut(s) 636, 915, 1089, 1134, 1178, 1281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.