FvH4_5g24470

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000079
Physical Location & Seq
Forward (+)
15821653 .. 15822462
810 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24470.t1

Sequence Viewer

Length: 810 bp
ATGTTTCGGCGGAATGTTGTTGAATTTGAGTTTGTTTTAGAGCACTTTCCAATACCCCAGGACCTTTTTATGTGCAAGACACTGAGGAGTTTGAAGCTATACTGGTATGAGAACGACCTCAGTGTTGAGCCTCCTGAATTAGGTTGTTTTCCAAATCTGAAAGTTTTCCATGCTATAGTTGGTGCTTCTCAGGTGCCTTCATTTGTAAAGTTATTATCTAGATGCCCTGTGCTTGAATTTTTGACTATTGAAGGAATTACGCAATGCGGGGATGATCAGGTTAATGATATTGAGGTTACTGGGGCTCAAATGAAGACTCTGAAAATTAGGTTTGAAAGTGATCAACTTAATGGTGATACTAGTGGCGGTTTTAAAATCAATATCAATGCCCCAAAGCTTGAAAATCTTTATATCAGAACTGATGGCTCGGTATCTTTCTCTTTTACGGGGAGTGTGAAGTCTTTGGTAAATGTTAGTATTGCTTTCGGAGAATTTGAAGCAGAAAAACCACCGATCTTTTGTGGCCTTCTGGATGTTGTTTCTAGTGTTAAATACCTAACTCTTTCGGCTAGTCGGTTTAAGGATTGGCATCTCCCAGCTTTTGGTAATCTGAACCAATTGGAGCTTGTACTTTGGGATTGCAATTACATGGAATTGCTAGCTCTGTTTCTGCACAGTGCACCTAATCTCGAAGATATTATCTTAGTGTGTAGCACCAAATTTGAAGTAGAAGATTCAGTGTTCCAATGGAATCCGCCAGAGGAAGTGCCTGTTTGTTTGTCATCACACTTGAAGACTATCTCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

270

Amino Acids

30.35

Weight (kDa)

4.81

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 14 - 108 2.8e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccB7I CCANNNNNTGG 1 cut(s) 602
AciI CCGC 4 cut(s) 10, 267, 366, 755
AcsI RAATTY 4 cut(s) 23, 236, 491, 719
AfaI GTAC 1 cut(s) 630
AfiI CCNNNNNNNGG 2 cut(s) 140, 602
AgsI TTSAA 9 cut(s) 23, 94, 236, 251, 335, 401, 497, 725, 793
AhlI ACTAGT 1 cut(s) 359
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 5 cut(s) 97, 397, 599, 625, 662
AluI AGCT 5 cut(s) 97, 397, 599, 625, 662
Alw21I GWGCWC 2 cut(s) 45, 682
Alw44I GTGCAC 1 cut(s) 678
AoxI GGCC 1 cut(s) 523
ApaLI GTGCAC 1 cut(s) 678
ApoI RAATTY 4 cut(s) 23, 236, 491, 719
Asp700I GAANNNNTTC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 365
AsuNHI GCTAGC 1 cut(s) 658
AvaII GGWCC 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 682
BanI GGYRCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 307
BbsI GAAGAC 2 cut(s) 320, 800
Bbv12I GWGCWC 2 cut(s) 45, 682
BccI CCATC 1 cut(s) 416
BciT130I CCWGG 1 cut(s) 59
BclI TGATCA 2 cut(s) 274, 340
BcuI ACTAGT 1 cut(s) 359
BfaI CTAG 5 cut(s) 219, 360, 543, 570, 659
BfmI CTRYAG 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 59
BmrI ACTGGG 1 cut(s) 309
BmsI GCATC 2 cut(s) 212, 598
BmtI GCTAGC 1 cut(s) 662
BmuI ACTGGG 1 cut(s) 309
BpiI GAAGAC 2 cut(s) 320, 800
BsaBI GATNNNNATC 1 cut(s) 588
BsaJI CCNNGG 1 cut(s) 57
BsaXI ACNNNNNCTCC 1 cut(s) 787
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 602
Bse1I ACTGG 2 cut(s) 107, 304
Bse3DI GCAATG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 588
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 277, 538
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 2 cut(s) 140, 602
BseMI GCAATG 1 cut(s) 269
BseMII CTCAG 3 cut(s) 74, 133, 203
BseNI ACTGG 2 cut(s) 107, 304
BseRI GAGGAG 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 682
BseYI CCCAGC 1 cut(s) 595
BsgI GTGCAG 1 cut(s) 656
BshFI GGCC 1 cut(s) 525
BshNI GGYRCC 1 cut(s) 193
BsiHKAI GWGCWC 2 cut(s) 45, 682
BslI CCNNNNNNNGG 2 cut(s) 140, 602
BsnI GGCC 1 cut(s) 525
Bsp1286I GDGCHC 3 cut(s) 45, 307, 682
Bsp143I GATC 3 cut(s) 274, 340, 513
BspACI CCGC 4 cut(s) 10, 267, 366, 755
BspANI GGCC 1 cut(s) 525
BspCNI CTCAG 3 cut(s) 75, 132, 202
BspLI GGNNCC 1 cut(s) 195
BspOI GCTAGC 1 cut(s) 662
BspT107I GGYRCC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 269
BsrI ACTGG 2 cut(s) 107, 304
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 3 cut(s) 274, 340, 513
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 677
BstC8I GCNNGC 1 cut(s) 660
BstDEI CTNAG 4 cut(s) 83, 119, 189, 703
BstENI CCTNNNNNAGG 1 cut(s) 138
BstF5I GGATG 2 cut(s) 277, 538
BstKTI GATC 3 cut(s) 277, 343, 516
BstMBI GATC 3 cut(s) 274, 340, 513
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 57
BstSFI CTRYAG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 682
BstV2I GAAGAC 2 cut(s) 320, 800
BsuRI GGCC 1 cut(s) 525
BtsCI GGATG 2 cut(s) 277, 538
BtsIMutI CAGTG 4 cut(s) 80, 127, 682, 744
Cac8I GCNNGC 1 cut(s) 660
Cfr13I GGNCC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 629
CviAII CATG 2 cut(s) 170, 649
CviQI GTAC 1 cut(s) 629
DdeI CTNAG 4 cut(s) 83, 119, 189, 703
DpnI GATC 3 cut(s) 276, 342, 515
DpnII GATC 3 cut(s) 274, 340, 513
DraI TTTAAA 1 cut(s) 373
EciI GGCGGA 2 cut(s) 25, 744
Eco24I GRGCYC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 61
EcoNI CCTNNNNNAGG 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 307
FaeI CATG 2 cut(s) 173, 652
FaiI YATR 8 cut(s) 71, 100, 108, 171, 176, 411, 650, 808
FatI CATG 2 cut(s) 169, 648
FauI CCCGC 1 cut(s) 260
FbaI TGATCA 2 cut(s) 274, 340
FokI GGATG 2 cut(s) 284, 545
FriOI GRGCYC 1 cut(s) 307
FspBI CTAG 5 cut(s) 219, 360, 543, 570, 659
GsaI CCCAGC 1 cut(s) 599
HaeIII GGCC 1 cut(s) 525
Hin1II CATG 2 cut(s) 173, 652
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 3 cut(s) 316, 734, 751
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 1 cut(s) 680
Hpy188I TCNGA 5 cut(s) 159, 321, 416, 488, 612
Hpy188III TCNNGA 4 cut(s) 134, 219, 530, 689
Hpy8I GTNNAC 1 cut(s) 680
HpyAV CCTTC 3 cut(s) 207, 245, 536
HpyCH4III ACNGT 1 cut(s) 677
HpyCH4V TGCA 4 cut(s) 75, 642, 673, 680
HpyF3I CTNAG 4 cut(s) 83, 119, 189, 703
Hsp92II CATG 2 cut(s) 173, 652
Ksp22I TGATCA 2 cut(s) 274, 340
Kzo9I GATC 3 cut(s) 274, 340, 513
LmnI GCTCC 1 cut(s) 622
LweI GCATC 2 cut(s) 212, 598
MaeI CTAG 5 cut(s) 219, 360, 543, 570, 659
MaeIII GTNAC 1 cut(s) 295
MalI GATC 3 cut(s) 276, 342, 515
MboI GATC 3 cut(s) 274, 340, 513
MboII GAAGA 4 cut(s) 325, 704, 743, 805
MfeI CAATTG 1 cut(s) 617
MhlI GDGCHC 3 cut(s) 45, 307, 682
MlyI GAGTC 1 cut(s) 310
MnlI CCTC 5 cut(s) 78, 128, 141, 286, 754
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 5 cut(s) 282, 348, 372, 549, 579
MspR9I CCNGG 1 cut(s) 59
MunI CAATTG 1 cut(s) 617
MvaI CCWGG 1 cut(s) 59
NdeII GATC 3 cut(s) 274, 340, 513
NheI GCTAGC 1 cut(s) 658
NlaIII CATG 2 cut(s) 173, 652
NlaIV GGNNCC 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 734, 751
PflMI CCANNNNNTGG 1 cut(s) 602
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 595
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 61
PspPPI RGGWCCY 1 cut(s) 61
RsaI GTAC 1 cut(s) 630
RsaNI GTAC 1 cut(s) 629
SaqAI TTAA 5 cut(s) 282, 348, 372, 549, 579
Sau3AI GATC 3 cut(s) 274, 340, 513
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 3 cut(s) 45, 307, 682
SfaNI GCATC 2 cut(s) 212, 598
SfcI CTRYAG 1 cut(s) 174
SinI GGWCC 1 cut(s) 61
SpeI ACTAGT 1 cut(s) 359
SsiI CCGC 4 cut(s) 10, 267, 366, 755
SspMI CTAG 5 cut(s) 219, 360, 543, 570, 659
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 677
TaqI TCGA 1 cut(s) 690
TatI WGTACW 1 cut(s) 628
TfiI GAWTC 2 cut(s) 734, 751
Tru1I TTAA 5 cut(s) 282, 348, 372, 549, 579
Tru9I TTAA 5 cut(s) 282, 348, 372, 549, 579
TscAI CASTG 4 cut(s) 87, 127, 682, 744
TspDTI ATGAA 2 cut(s) 189, 326
TspRI CASTG 4 cut(s) 87, 127, 682, 744
Van91I CCANNNNNTGG 1 cut(s) 602
VneI GTGCAC 1 cut(s) 678
VpaK11BI GGWCC 1 cut(s) 61
XagI CCTNNNNNAGG 1 cut(s) 138
XapI RAATTY 4 cut(s) 23, 236, 491, 719
XbaI TCTAGA 1 cut(s) 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 5 cut(s) 219, 360, 543, 570, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.