Rorug07G0004400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000079
Physical Location & Seq
Reverse (-)
369248 .. 373432
4185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0004400.1

Sequence Viewer

Length: 2742 bp
ATGGCTTCCATCCCGGCCTTGAAGCGCTCCGATTCAATTGCAGACACTATGCCAGATGCTCTGAGACAGAGCCGCTATCACATGAAGAAATGTTTTGCCAGGTTTGTCGGGAATGGGAAGAGGTTAATGAAGCCCCAGCATATAATGGAGGAAATCGAAAAATCAATAGAGGACGGGAATGAAAAAAGCAAGGTGTTACGGGGATTACTTGGTTACATCCTCAGTTCCACTCAGGAAGCAGCTGTTGTTCCGCCGCATGTTGCATTTTCTGTTAGACCAAATCCTGGTTTCTCAGAGTTTGTTAAGGTGAATGCTGATGATCTAGCAGTGGATGGAATCAGTGTTACCGAATACTTGAAATTCAAAGAAATGATCTACGACGAGAACTGGGCAAATGATGAAAATGCTTTGGAAATTGATTTTGGAGCCATTGACTTCTCTAGTCCTCGCATGACTCTTCCTTCTTCTATTGGGAATGGACTTAACTTCATCCTCAAGTTAATCTCCTCGAGGCTGAATGCCAGCTCATCCGATTATGCCAAACCCTTGCTTGACTACTTGTTAGCACTCAATCACCACGGACAGAATCTTATGATCAATGAAACTATGGATTCGGTGGAAAAGCTTGAAACGTCATTGATTCGAGCACAATCGTTTGTCTCAGCACTCCCAAAAAACACACCATTTCTTAATTTCGAGCAGAGGTTAAAGGACATGGGTTTTGAGAAAGGATGGGGGGATACAGCAGAAAGAGTTGGTGAGAGAATGAGGACGCTGTCAGAAGTACTCCAAGCGCCGGATTGCGTGAAGTTGGAGTCATTCTTTAGCAGCCTTCCCAATACATTCAACATTGTCATCTTCTCTCCTCACGGCTACTTTGGCCAGTCAGATGTCCTTGGATTGCCTGATACTGGTGGCCAGGTGGTTTATATACTTGATCAAGTGAGAGCCTTAGAGGAAGAGTTGCTACTGAGAATAAAGCAGCAAGGGCTTGCTGTGAAGCCTCAGATTCTTGTGGTGACGCGACTCATACCAGACTCTCGAGGGACAAAGTGCAATGTGGAGTTGGAGGCTATAGTCAACACTAAGCACTCCCACATTCTCAGGGTTCCTTTCAGGACAGACAAAGGCATTCTGCGCCATTGGGTGTCCCGTTTTGATATCTACCCTTATCTTGAGACTTTTGTCCAGGATGCAACTGCAAAGATTCTAGAGCACATGGACTGCAAACCGGACCTCATAATTGGGAACTACAGTGATGGAAACTTGGTGGCCTCTTTGATGGCTGCCAAGCTTGGAATAACACAGGGAACAATTGCCCACGCTCTAGAAAAGACCAAGTATGAAGACTCGGATGCCAAATGGAAGGAATTTGATACAAAGTACCACTTTTCTTGTCAGTTCACTGCAGACTTAATCTCGATGAACTCAACTGATTTTGTCATAACTAGCACATTTCAAGAAATAGCAGGAGGTAAGGATCGACCTGGACAGTATGAAAGCCACACCGCATTTACAATGCCAGGACTGTGTCGAGTAGTCTCAGGCATTGATGTGTTTGATCCGAAGTTCAACATTGCCGCTCCCGGTGCTGACCAATCTGTCTACTTCCCCAACTCCGAAAAACAGAAGCGTTTTACCAAATTTCATCCTTCCATTGAACAAATGGTCTACAGTAAGGAGGAAAACGACGAGCACATAGGATTTTTGGCAGACAAAAAGAAACCAATCATCTTTTCAATGGCAAGACTGGATAAAGTGAAGAACCTCTCAGGACTAGTTGAGTGGTTCGGAAAGAACAAGAGGCTGAGGAATTTGGTCAACCTTGTTATAGTAGGGGGGTTCTTTGACCCATCCAAGTCCAAAGACAGAGAAGAAATTGCTGAAATTATCAAACTGCATGCCTTGGTTAAAGAATATCAACTTAATGGCCAGTTCAGATGGATAGCAGCTCAAACTGATAGGTATCGCAACGGAGAGTTGTACCGCTGCATTGCTGATACAAAGGGAGCTTTTGTGCAGCCTGCATTGTATGAAGCCTTTGGTCTTACAGTGATTGAGGCAATGAACTGTGGATTGCCCACTTTTGCTACAAACCAAGGAGGTCCGGCTGAAATTATTGTTGATGGAGTCTCGGGCTTCCATATTGATCCCAACAATGGTGAAGAGTCCAGTAACAAGATTGCTGATTTCTTTGAGAGATGCAGGGCAGATGGTGAATACTGGAAGAAGATGTCCGCGGCGGGTCTGCAGCGTATATATGCATGCTATACATGGAAAATATATGCAAACAAAATGTTGAACATGGGATCCACTTATGGGTTTTGGAGGCAGTTGAGGAAGGAGCCGAAGCTAGCAAAGCAAAGCTACATTCATATGTTTTACAGTCTCCTATTTAGGACTTTGGCAAGGACTGTCCCTGTCCCAAGTGATGGATATGAACCAGTACCGATACCAAAGGCAATAGCTGCAGCTGACCAAGGCAAACCAAAGTCAGTGACAACTGTATCCAAACCCCCACAAGCCGCAGCTGCACCAACAATGCCAACAGTTCCAGTTGCTCAGATCACACCAACACCAAGGGATGAAGGAGGTTTAGAGCAGATAAATAAGCAACCTATTGGCCCTCCTGATGTTGCAAGTCCAAACCGCCCAACACGGTGCCTTTGGAATTGCTTCTTCGTCATCATTGGTTTTCTGTGCCTTGTTTATTACAAGCTCAAGAATATGTACTACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

913

Amino Acids

102.61

Weight (kDa)

7.81

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUS_N PF24861 9 - 123 5.8e-46 Sucrose synthase N-terminal
SUS_EPBD PF24862 159 - 247 6.2e-27 Sucrose synthase EPBD domain
GT-B_Sucrose_synth PF00862 270 - 558 1.3e-167 Sucrose synthase first GT-B domain
Glycos_transf_1 PF00534 569 - 733 4.7e-30 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 576 - 731 5.6e-14 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1601
AbsI CCTCGAGG 1 cut(s) 508
AccB1I GGYRCC 1 cut(s) 2661
AccB7I CCANNNNNTGG 2 cut(s) 284, 2432
AccBSI CCGCTC 1 cut(s) 1583
AccI GTMKAC 2 cut(s) 1605, 1671
AccII CGCG 2 cut(s) 1024, 2240
AclWI GGATC 5 cut(s) 1488, 1556, 2144, 2304, 2317
AcoI YGGCCR 3 cut(s) 880, 916, 1930
AcsI RAATTY 4 cut(s) 359, 1370, 1643, 1813
AfaI GTAC 5 cut(s) 786, 1385, 1985, 2448, 2732
AfeI AGCGCT 1 cut(s) 26
AfiI CCNNNNNNNGG 6 cut(s) 284, 796, 911, 2159, 2319, 2432
AhlI ACTAGT 1 cut(s) 1777
AjnI CCWGG 6 cut(s) 98, 283, 918, 1188, 1486, 1522
AjuI GAANNNNNNNTTGG 4 cut(s) 405, 437, 1720, 1752
AloI GAACNNNNNNTCC 2 cut(s) 2294, 2326
Alw21I GWGCWC 3 cut(s) 649, 1218, 1698
Alw26I GTCTC 6 cut(s) 58, 664, 1172, 1546, 2137, 2393
AlwI GGATC 5 cut(s) 1488, 1556, 2144, 2304, 2317
Ama87I CYCGRG 3 cut(s) 508, 1041, 2134
Aor51HI AGCGCT 1 cut(s) 26
AoxI GGCC 6 cut(s) 15, 880, 916, 1272, 1930, 2623
ApoI RAATTY 4 cut(s) 359, 1370, 1643, 1813
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
Asp700I GAANNNNTTC 1 cut(s) 2675
AspLEI GCGC 3 cut(s) 27, 796, 1140
AspS9I GGNCC 3 cut(s) 1234, 2105, 2624
AsuC2I CCSGG 2 cut(s) 14, 1587
AsuHPI GGTGA 6 cut(s) 319, 566, 770, 1030, 2174, 2228
AsuNHI GCTAGC 1 cut(s) 2353
AvaI CYCGRG 3 cut(s) 508, 1041, 2134
AvaII GGWCC 2 cut(s) 1234, 2105
BaeI ACNNNNGTAYC 2 cut(s) 2490, 2523
BalI TGGCCA 3 cut(s) 882, 918, 1932
BamHI GGATCC 1 cut(s) 2309
BanI GGYRCC 1 cut(s) 2661
BarI GAAGNNNNNNTAC 2 cut(s) 951, 983
BbsI GAAGAC 1 cut(s) 1353
Bbv12I GWGCWC 3 cut(s) 649, 1218, 1698
BbvCI CCTCAGC 1 cut(s) 1808
BceAI ACGGC 1 cut(s) 886
BcgI CGANNNNNNTGC 2 cut(s) 20, 54
BciT130I CCWGG 6 cut(s) 100, 285, 920, 1190, 1488, 1524
BciVI GTATCC 2 cut(s) 733, 2518
BclI TGATCA 2 cut(s) 594, 937
BcnI CCSGG 2 cut(s) 14, 1587
BcoDI GTCTC 6 cut(s) 58, 664, 1172, 1546, 2137, 2393
BcuI ACTAGT 1 cut(s) 1777
BfaI CTAG 7 cut(s) 323, 441, 1211, 1328, 1449, 1778, 2354
BfmI CTRYAG 6 cut(s) 1074, 1252, 1407, 1672, 2249, 2469
BfoI RGCGCY 2 cut(s) 28, 797
BfuI GTATCC 2 cut(s) 733, 2518
BmcAI AGTACT 1 cut(s) 786
Bme1390I CCNGG 8 cut(s) 14, 100, 285, 920, 1190, 1488, 1524, 1587
Bme18I GGWCC 2 cut(s) 1234, 2105
BmeT110I CYCGRG 3 cut(s) 508, 1041, 2134
BmgT120I GGNCC 3 cut(s) 1234, 2105, 2624
BmiI GGNNCC 5 cut(s) 427, 1110, 2311, 2346, 2663
BmrFI CCNGG 8 cut(s) 14, 100, 285, 920, 1190, 1488, 1524, 1587
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 4 cut(s) 46, 1183, 1345, 2192
BmtI GCTAGC 1 cut(s) 2357
BmuI ACTGGG 1 cut(s) 397
BoxI GACNNNNGTC 1 cut(s) 1184
BpiI GAAGAC 1 cut(s) 1353
Bpu10I CCTNAGC 1 cut(s) 1808
BpuEI CTTGAG 3 cut(s) 479, 1196, 2705
BpuMI CCSGG 2 cut(s) 14, 1587
BsaBI GATNNNNATC 1 cut(s) 1965
BsaJI CCNNGG 7 cut(s) 577, 895, 1905, 2098, 2238, 2479, 2579
BsaWI WCCGGW 1 cut(s) 1231
BsaXI ACNNNNNCTCC 2 cut(s) 2001, 2031
Bsc4I CCNNNNNNNGG 6 cut(s) 284, 796, 911, 2159, 2319, 2432
Bse1I ACTGG 9 cut(s) 392, 883, 916, 1755, 1933, 2172, 2228, 2444, 2555
Bse3DI GCAATG 4 cut(s) 1063, 1575, 1992, 2070
Bse8I GATNNNNATC 1 cut(s) 1965
BseBI CCWGG 6 cut(s) 100, 285, 920, 1190, 1488, 1524
BseDI CCNNGG 7 cut(s) 577, 895, 1905, 2098, 2238, 2479, 2579
BseJI GATNNNNATC 1 cut(s) 1965
BseLI CCNNNNNNNGG 6 cut(s) 284, 796, 911, 2159, 2319, 2432
BseMI GCAATG 4 cut(s) 1063, 1575, 1992, 2070
BseNI ACTGG 9 cut(s) 392, 883, 916, 1755, 1933, 2172, 2228, 2444, 2555
BseRI GAGGAG 2 cut(s) 496, 855
BseYI CCCAGC 1 cut(s) 135
BsgI GTGCAG 2 cut(s) 2039, 2517
Bsh1236I CGCG 2 cut(s) 1024, 2240
BshFI GGCC 6 cut(s) 17, 882, 918, 1274, 1932, 2625
BshNI GGYRCC 1 cut(s) 2661
BsiHKAI GWGCWC 3 cut(s) 649, 1218, 1698
BsiHKCI CYCGRG 3 cut(s) 508, 1041, 2134
BsiSI CCGG 5 cut(s) 14, 797, 1232, 1587, 2108
BslFI GGGAC 4 cut(s) 1060, 1135, 2402, 2408
BslI CCNNNNNNNGG 6 cut(s) 284, 796, 911, 2159, 2319, 2432
BsmAI GTCTC 6 cut(s) 58, 664, 1172, 1546, 2137, 2393
BsmFI GGGAC 4 cut(s) 1060, 1135, 2402, 2408
BsmI GAATGC 3 cut(s) 316, 523, 1131
BsnI GGCC 6 cut(s) 17, 882, 918, 1274, 1932, 2625
BsoBI CYCGRG 3 cut(s) 508, 1041, 2134
Bsp1286I GDGCHC 3 cut(s) 649, 1218, 1698
Bsp143I GATC 9 cut(s) 319, 372, 594, 937, 1480, 1561, 2149, 2309, 2565
BspANI GGCC 6 cut(s) 17, 882, 918, 1274, 1932, 2625
BspFNI CGCG 2 cut(s) 1024, 2240
BspLI GGNNCC 5 cut(s) 427, 1110, 2311, 2346, 2663
BspMAI CTGCAG 3 cut(s) 1411, 2253, 2473
BspOI GCTAGC 1 cut(s) 2357
BspPI GGATC 5 cut(s) 1488, 1556, 2144, 2304, 2317
BspT107I GGYRCC 1 cut(s) 2661
BsrBI CCGCTC 1 cut(s) 1583
BsrDI GCAATG 4 cut(s) 1063, 1575, 1992, 2070
BsrI ACTGG 9 cut(s) 392, 883, 916, 1755, 1933, 2172, 2228, 2444, 2555
BssECI CCNNGG 7 cut(s) 577, 895, 1905, 2098, 2238, 2479, 2579
BssMI GATC 9 cut(s) 319, 372, 594, 937, 1480, 1561, 2149, 2309, 2565
BssT1I CCWWGG 5 cut(s) 895, 1905, 2098, 2479, 2579
Bst2UI CCWGG 6 cut(s) 100, 285, 920, 1190, 1488, 1524
Bst6I CTCTTC 4 cut(s) 113, 462, 954, 2160
BstAPI GCANNNNNTGC 1 cut(s) 2468
BstC8I GCNNGC 6 cut(s) 523, 993, 1902, 2025, 2266, 2355
BstDSI CCRYGG 2 cut(s) 577, 2238
BstFNI CGCG 2 cut(s) 1024, 2240
BstH2I RGCGCY 2 cut(s) 28, 797
BstHHI GCGC 3 cut(s) 27, 796, 1140
BstKTI GATC 9 cut(s) 322, 375, 597, 940, 1483, 1564, 2152, 2312, 2568
BstMAI GTCTC 6 cut(s) 58, 664, 1172, 1546, 2137, 2393
BstMBI GATC 9 cut(s) 319, 372, 594, 937, 1480, 1561, 2149, 2309, 2565
BstMWI GCNNNNNNNGC 7 cut(s) 879, 988, 1137, 1589, 2359, 2468, 2531
BstNI CCWGG 6 cut(s) 100, 285, 920, 1190, 1488, 1524
BstNSI RCATGY 3 cut(s) 260, 1904, 2268
BstPAI GACNNNNGTC 1 cut(s) 1184
BstSCI CCNGG 8 cut(s) 12, 98, 283, 918, 1188, 1486, 1522, 1585
BstSFI CTRYAG 6 cut(s) 1074, 1252, 1407, 1672, 2249, 2469
BstUI CGCG 2 cut(s) 1024, 2240
BstV2I GAAGAC 1 cut(s) 1353
BstX2I RGATCY 1 cut(s) 2309
BstYI RGATCY 1 cut(s) 2309
BsuI GTATCC 2 cut(s) 733, 2518
BsuRI GGCC 6 cut(s) 17, 882, 918, 1274, 1932, 2625
BtgI CCRYGG 2 cut(s) 577, 2238
BtsI GCAGTG 2 cut(s) 333, 1404
BtsIMutI CAGTG 6 cut(s) 333, 346, 1261, 1404, 2058, 2502
Cac8I GCNNGC 6 cut(s) 523, 993, 1902, 2025, 2266, 2355
CfoI GCGC 3 cut(s) 27, 796, 1140
Cfr13I GGNCC 3 cut(s) 1234, 2105, 2624
Cfr42I CCGCGG 1 cut(s) 2241
CseI GACGC 2 cut(s) 781, 1030
Csp6I GTAC 5 cut(s) 785, 1384, 1984, 2447, 2731
CspCI CAANNNNNGTGG 2 cut(s) 1376, 1411
CviAII CATG 9 cut(s) 82, 257, 451, 715, 1219, 1901, 2265, 2274, 2305
CviQI GTAC 5 cut(s) 785, 1384, 1984, 2447, 2731
DpnI GATC 9 cut(s) 321, 374, 596, 939, 1482, 1563, 2151, 2311, 2567
DpnII GATC 9 cut(s) 319, 372, 594, 937, 1480, 1561, 2149, 2309, 2565
DrdI GACNNNNNNGTC 1 cut(s) 1601
DseDI GACNNNNNNGTC 1 cut(s) 1601
EaeI YGGCCR 3 cut(s) 880, 916, 1930
Eam1104I CTCTTC 4 cut(s) 113, 462, 954, 2160
EarI CTCTTC 4 cut(s) 113, 462, 954, 2160
EciI GGCGGA 1 cut(s) 240
Eco130I CCWWGG 5 cut(s) 895, 1905, 2098, 2479, 2579
Eco32I GATATC 1 cut(s) 1162
Eco47I GGWCC 2 cut(s) 1234, 2105
Eco47III AGCGCT 1 cut(s) 26
Eco88I CYCGRG 3 cut(s) 508, 1041, 2134
EcoRII CCWGG 6 cut(s) 98, 283, 918, 1188, 1486, 1522
EcoRV GATATC 1 cut(s) 1162
EcoT14I CCWWGG 5 cut(s) 895, 1905, 2098, 2479, 2579
EcoT22I ATGCAT 1 cut(s) 2266
ErhI CCWWGG 5 cut(s) 895, 1905, 2098, 2479, 2579
FaeI CATG 9 cut(s) 85, 260, 454, 718, 1222, 1904, 2268, 2277, 2308
FalI AAGNNNNNCTT 2 cut(s) 1373, 1405
FaqI GGGAC 4 cut(s) 1060, 1135, 2402, 2408
FatI CATG 9 cut(s) 81, 256, 450, 714, 1218, 1900, 2264, 2273, 2304
FauI CCCGC 1 cut(s) 2236
FauNDI CATATG 1 cut(s) 2376
FbaI TGATCA 2 cut(s) 594, 937
FblI GTMKAC 2 cut(s) 1605, 1671
FspBI CTAG 7 cut(s) 323, 441, 1211, 1328, 1449, 1778, 2354
GlaI GCGC 3 cut(s) 26, 795, 1139
GsaI CCCAGC 1 cut(s) 139
HaeII RGCGCY 2 cut(s) 28, 797
HaeIII GGCC 6 cut(s) 17, 882, 918, 1274, 1932, 2625
HapII CCGG 5 cut(s) 14, 797, 1232, 1587, 2108
HgaI GACGC 2 cut(s) 781, 1030
HhaI GCGC 3 cut(s) 27, 796, 1140
Hin1II CATG 9 cut(s) 85, 260, 454, 718, 1222, 1904, 2268, 2277, 2308
Hin6I GCGC 3 cut(s) 25, 794, 1138
HinP1I GCGC 3 cut(s) 25, 794, 1138
HincII GTYRAC 2 cut(s) 1081, 1822
HindII GTYRAC 2 cut(s) 1081, 1822
HindIII AAGCTT 2 cut(s) 623, 1292
HpaII CCGG 5 cut(s) 14, 797, 1232, 1587, 2108
HphI GGTGA 6 cut(s) 319, 566, 770, 1030, 2174, 2228
Hpy166II GTNNAC 5 cut(s) 1081, 1404, 1606, 1672, 1822
Hpy8I GTNNAC 5 cut(s) 1081, 1404, 1606, 1672, 1822
Hpy99I CGWCG 2 cut(s) 383, 1694
HpyAV CCTTC 6 cut(s) 471, 842, 1360, 1662, 2335, 2582
HpyCH4IV ACGT 1 cut(s) 632
HpyF10VI GCNNNNNNNGC 7 cut(s) 879, 988, 1137, 1589, 2359, 2468, 2531
HpySE526I ACGT 1 cut(s) 632
Hsp92II CATG 9 cut(s) 85, 260, 454, 718, 1222, 1904, 2268, 2277, 2308
HspAI GCGC 3 cut(s) 25, 794, 1138
Ksp22I TGATCA 2 cut(s) 594, 937
KspI CCGCGG 1 cut(s) 2241
Kzo9I GATC 9 cut(s) 319, 372, 594, 937, 1480, 1561, 2149, 2309, 2565
LmnI GCTCC 5 cut(s) 32, 425, 1588, 2009, 2344
LweI GCATC 4 cut(s) 46, 1183, 1345, 2192
MaeI CTAG 7 cut(s) 323, 441, 1211, 1328, 1449, 1778, 2354
MaeII ACGT 1 cut(s) 632
MaeIII GTNAC 6 cut(s) 195, 212, 343, 1018, 2174, 2497
MalI GATC 9 cut(s) 321, 374, 596, 939, 1482, 1563, 2151, 2311, 2567
MbiI CCGCTC 1 cut(s) 1583
MboI GATC 9 cut(s) 319, 372, 594, 937, 1480, 1561, 2149, 2309, 2565
MfeI CAATTG 2 cut(s) 36, 1314
MflI RGATCY 1 cut(s) 2309
MhlI GDGCHC 3 cut(s) 649, 1218, 1698
MlsI TGGCCA 3 cut(s) 882, 918, 1932
MluNI TGGCCA 3 cut(s) 882, 918, 1932
MlyI GAGTC 7 cut(s) 448, 824, 1020, 1031, 1343, 2139, 2177
MmeI TCCRAC 2 cut(s) 792, 1047
Mox20I TGGCCA 3 cut(s) 882, 918, 1932
Mph1103I ATGCAT 1 cut(s) 2266
MroXI GAANNNNTTC 1 cut(s) 2675
MscI TGGCCA 3 cut(s) 882, 918, 1932
MseI TTAA 9 cut(s) 125, 303, 483, 500, 690, 707, 1415, 1911, 1926
MslI CAYNNNNRTG 2 cut(s) 1553, 2375
Msp20I TGGCCA 3 cut(s) 882, 918, 1932
MspA1I CMGCKG 5 cut(s) 242, 1989, 2240, 2474, 2531
MspI CCGG 5 cut(s) 14, 797, 1232, 1587, 2108
MspR9I CCNGG 8 cut(s) 14, 100, 285, 920, 1190, 1488, 1524, 1587
MunI CAATTG 2 cut(s) 36, 1314
Mva1269I GAATGC 3 cut(s) 316, 523, 1131
MvaI CCWGG 6 cut(s) 100, 285, 920, 1190, 1488, 1524
MvnI CGCG 2 cut(s) 1024, 2240
MwoI GCNNNNNNNGC 7 cut(s) 879, 988, 1137, 1589, 2359, 2468, 2531
NciI CCSGG 2 cut(s) 14, 1587
NdeI CATATG 1 cut(s) 2376
NdeII GATC 9 cut(s) 319, 372, 594, 937, 1480, 1561, 2149, 2309, 2565
NheI GCTAGC 1 cut(s) 2353
NlaIII CATG 9 cut(s) 85, 260, 454, 718, 1222, 1904, 2268, 2277, 2308
NlaIV GGNNCC 5 cut(s) 427, 1110, 2311, 2346, 2663
NmuCI GTSAC 2 cut(s) 1018, 2497
NsiI ATGCAT 1 cut(s) 2266
NspI RCATGY 3 cut(s) 260, 1904, 2268
PaeI GCATGC 2 cut(s) 1904, 2268
PaeR7I CTCGAG 2 cut(s) 508, 1041
PctI GAATGC 3 cut(s) 316, 523, 1131
PdmI GAANNNNTTC 1 cut(s) 2675
PfeI GAWTC 7 cut(s) 32, 336, 586, 611, 640, 1009, 1207
PflFI GACNNNGTC 2 cut(s) 775, 1530
PflMI CCANNNNNTGG 2 cut(s) 284, 2432
PfoI TCCNGGA 1 cut(s) 1188
PleI GAGTC 7 cut(s) 448, 823, 1020, 1031, 1343, 2138, 2176
PpsI GAGTC 7 cut(s) 448, 823, 1020, 1031, 1343, 2138, 2176
PshAI GACNNNNGTC 1 cut(s) 1184
Psp6I CCWGG 6 cut(s) 98, 283, 918, 1188, 1486, 1522
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 6 cut(s) 98, 283, 918, 1188, 1486, 1522
PspN4I GGNNCC 5 cut(s) 427, 1110, 2311, 2346, 2663
PspPI GGNCC 3 cut(s) 1234, 2105, 2624
PspXI VCTCGAGB 1 cut(s) 508
PstI CTGCAG 3 cut(s) 1411, 2253, 2473
PsuI RGATCY 1 cut(s) 2309
PsyI GACNNNGTC 2 cut(s) 775, 1530
PvuII CAGCTG 3 cut(s) 242, 2474, 2531
RsaI GTAC 5 cut(s) 786, 1385, 1985, 2448, 2732
RsaNI GTAC 5 cut(s) 785, 1384, 1984, 2447, 2731
RseI CAYNNNNRTG 2 cut(s) 1553, 2375
SacII CCGCGG 1 cut(s) 2241
SaqAI TTAA 9 cut(s) 125, 303, 483, 500, 690, 707, 1415, 1911, 1926
Sau3AI GATC 9 cut(s) 319, 372, 594, 937, 1480, 1561, 2149, 2309, 2565
Sau96I GGNCC 3 cut(s) 1234, 2105, 2624
ScaI AGTACT 1 cut(s) 786
SchI GAGTC 7 cut(s) 448, 824, 1020, 1031, 1343, 2139, 2177
ScrFI CCNGG 8 cut(s) 14, 100, 285, 920, 1190, 1488, 1524, 1587
SduI GDGCHC 3 cut(s) 649, 1218, 1698
SfaNI GCATC 4 cut(s) 46, 1183, 1345, 2192
SfcI CTRYAG 6 cut(s) 1074, 1252, 1407, 1672, 2249, 2469
Sfr274I CTCGAG 2 cut(s) 508, 1041
Sfr303I CCGCGG 1 cut(s) 2241
SgrBI CCGCGG 1 cut(s) 2241
SinI GGWCC 2 cut(s) 1234, 2105
SlaI CTCGAG 2 cut(s) 508, 1041
SmiMI CAYNNNNRTG 2 cut(s) 1553, 2375
SmlI CTYRAG 5 cut(s) 494, 508, 1041, 1175, 2720
SmoI CTYRAG 5 cut(s) 494, 508, 1041, 1175, 2720
SpeI ACTAGT 1 cut(s) 1777
SphI GCATGC 2 cut(s) 1904, 2268
SspMI CTAG 7 cut(s) 323, 441, 1211, 1328, 1449, 1778, 2354
StyD4I CCNGG 8 cut(s) 12, 98, 283, 918, 1188, 1486, 1522, 1585
StyI CCWWGG 5 cut(s) 895, 1905, 2098, 2479, 2579
TaiI ACGT 1 cut(s) 635
TaqI TCGA 8 cut(s) 156, 509, 643, 696, 1042, 1421, 1483, 1534
TatI WGTACW 2 cut(s) 784, 2730
TauI GCSGC 5 cut(s) 75, 256, 1583, 2243, 2528
TfiI GAWTC 7 cut(s) 32, 336, 586, 611, 640, 1009, 1207
Tru1I TTAA 9 cut(s) 125, 303, 483, 500, 690, 707, 1415, 1911, 1926
Tru9I TTAA 9 cut(s) 125, 303, 483, 500, 690, 707, 1415, 1911, 1926
TscAI CASTG 6 cut(s) 333, 346, 1261, 1411, 2058, 2502
TseFI GTSAC 2 cut(s) 1018, 2497
Tsp45I GTSAC 2 cut(s) 1018, 2497
TspGWI ACGGA 2 cut(s) 594, 1989
TspRI CASTG 6 cut(s) 333, 346, 1261, 1411, 2058, 2502
Tth111I GACNNNGTC 2 cut(s) 775, 1530
Van91I CCANNNNNTGG 2 cut(s) 284, 2432
VpaK11BI GGWCC 2 cut(s) 1234, 2105
XapI RAATTY 4 cut(s) 359, 1370, 1643, 1813
XbaI TCTAGA 2 cut(s) 1210, 1327
XceI RCATGY 3 cut(s) 260, 1904, 2268
XcmI CCANNNNNNNNNTGG 1 cut(s) 1663
XhoI CTCGAG 2 cut(s) 508, 1041
XmiI GTMKAC 2 cut(s) 1605, 1671
XmnI GAANNNNTTC 1 cut(s) 2675
XspI CTAG 7 cut(s) 323, 441, 1211, 1328, 1449, 1778, 2354
ZrmI AGTACT 1 cut(s) 786
Zsp2I ATGCAT 1 cut(s) 2266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.