Rorug05G0107400

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
9510567 .. 9511394
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0107400.1

Sequence Viewer

Length: 591 bp
ATGTTTTCTTTGGTTACCGTTCCGCCTGGCATTTTCTTGCCTGGTGATCTGCTGATGGTGTTCAATGGCGTTTTGTCTGGTTTTGAGATTTGGTTGTTGGATTCTGCATGGGATTTGGTGTGTTCACTGGTTGCATTCCTCGTGGTGTCTCTGTATCACGCAATGGATCGGTTTGTGGCGGTGTTAGCACCAGCTATTTCCTTCTCCGTTGGGTCTGCAATTGGGCTGAACCTGTGGTGGTGCTCCGATGTCGGGATGAACTGGGTGTATTCCAATTTTCCGATGGCAAACAATACTGTGACGTCTCTGGGTCACTTAACTAGTCGACAGGTGGCTGGTTATGTTTATGCTGCTGTCCTTTCCTCCCTTGGAGGGTTTGCTACTTGGATGGATAATGGTTCCCACTTGTTTTGTTTATCTTCTGTTTGTTTGCGTTATCCCCACACAGTGGGCTTTATATTCAATCCGATAAGTATGAAAACACCAGCAGTACTGGCAGATCGGAAAATGACATGTCTCCAAACAAATGCAATGACTGCTGCTGGATGGATTGTAATGGGAAATAAAGCAAAAGCTTCATGCATTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

196

Amino Acids

21.22

Weight (kDa)

6.87

Isoelectric Point (pI)

27.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 448
AccI GTMKAC 1 cut(s) 325
AciI CCGC 2 cut(s) 23, 179
AclWI GGATC 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 302
AdeI CACNNNGTG 1 cut(s) 448
AfaI GTAC 1 cut(s) 492
AfiI CCNNNNNNNGG 3 cut(s) 252, 372, 448
AflIII ACRYGT 1 cut(s) 512
AgsI TTSAA 2 cut(s) 64, 463
AhlI ACTAGT 1 cut(s) 320
AjnI CCWGG 2 cut(s) 25, 40
AluBI AGCT 2 cut(s) 194, 575
AluI AGCT 2 cut(s) 194, 575
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 3 cut(s) 153, 309, 521
AlwI GGATC 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 350, 539
AsuHPI GGTGA 1 cut(s) 56
BauI CACGAG 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 2 cut(s) 337, 526
BccI CCATC 4 cut(s) 49, 277, 382, 540
BciT130I CCWGG 2 cut(s) 27, 42
BcoDI GTCTC 3 cut(s) 153, 309, 521
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 1 cut(s) 321
BisI GCNGC 2 cut(s) 351, 540
BlsI GCNGC 2 cut(s) 352, 541
BmcAI AGTACT 1 cut(s) 492
Bme1390I CCNGG 2 cut(s) 27, 42
BmiI GGNNCC 1 cut(s) 400
BmrFI CCNGG 2 cut(s) 27, 42
BmrI ACTGGG 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 271
BsaHI GRCGYC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 367
Bsc4I CCNNNNNNNGG 3 cut(s) 252, 372, 448
Bse1I ACTGG 3 cut(s) 132, 266, 498
Bse3DI GCAATG 2 cut(s) 168, 537
BseBI CCWGG 2 cut(s) 27, 42
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 3 cut(s) 261, 393, 551
BseLI CCNNNNNNNGG 3 cut(s) 252, 372, 448
BseMI GCAATG 2 cut(s) 168, 537
BseNI ACTGG 3 cut(s) 132, 266, 498
BseXI GCAGC 2 cut(s) 337, 526
BsiHKAI GWGCWC 1 cut(s) 245
BslI CCNNNNNNNGG 3 cut(s) 252, 372, 448
BsmAI GTCTC 3 cut(s) 153, 309, 521
BsmBI CGTCTC 1 cut(s) 309
BsmI GAATGC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 3 cut(s) 46, 166, 499
BspACI CCGC 2 cut(s) 23, 179
BspLI GGNNCC 1 cut(s) 400
BspPI GGATC 1 cut(s) 174
BsrDI GCAATG 2 cut(s) 168, 537
BsrI ACTGG 3 cut(s) 132, 266, 498
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 3 cut(s) 46, 166, 499
BssNI GRCGYC 1 cut(s) 302
BssSI CACGAG 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 367
Bst2BI CACGAG 1 cut(s) 140
Bst2UI CCWGG 2 cut(s) 27, 42
Bst4CI ACNGT 3 cut(s) 19, 298, 448
BstACI GRCGYC 1 cut(s) 302
BstAPI GCANNNNNTGC 1 cut(s) 536
BstEII GGTNACC 1 cut(s) 13
BstF5I GGATG 3 cut(s) 261, 393, 551
BstKTI GATC 3 cut(s) 49, 169, 502
BstMAI GTCTC 3 cut(s) 153, 309, 521
BstMBI GATC 3 cut(s) 46, 166, 499
BstMWI GCNNNNNNNGC 3 cut(s) 185, 494, 536
BstNI CCWGG 2 cut(s) 27, 42
BstNSI RCATGY 1 cut(s) 516
BstPI GGTNACC 1 cut(s) 13
BstSCI CCNGG 2 cut(s) 25, 40
BstV1I GCAGC 2 cut(s) 337, 526
BtsCI GGATG 3 cut(s) 261, 393, 551
BtsIMutI CAGTG 2 cut(s) 125, 453
Csp6I GTAC 1 cut(s) 491
CspCI CAANNNNNGTGG 2 cut(s) 392, 427
CviAII CATG 3 cut(s) 108, 513, 579
CviJI RGCY 5 cut(s) 194, 226, 335, 453, 575
CviKI_1 RGCY 5 cut(s) 194, 226, 335, 453, 575
CviQI GTAC 1 cut(s) 491
DpnI GATC 3 cut(s) 48, 168, 501
DpnII GATC 3 cut(s) 46, 166, 499
DraIII CACNNNGTG 1 cut(s) 448
EciI GGCGGA 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 367
Eco91I GGTNACC 1 cut(s) 13
EcoO65I GGTNACC 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 25, 40
EcoT14I CCWWGG 1 cut(s) 367
EcoT22I ATGCAT 1 cut(s) 584
ErhI CCWWGG 1 cut(s) 367
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 3 cut(s) 111, 516, 582
FaiI YATR 8 cut(s) 109, 342, 348, 458, 476, 514, 580, 587
FatI CATG 3 cut(s) 107, 512, 578
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 2 cut(s) 351, 540
FokI GGATG 3 cut(s) 268, 400, 558
Fsp4HI GCNGC 2 cut(s) 351, 540
FspBI CTAG 1 cut(s) 321
GluI GCNGC 2 cut(s) 351, 540
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 3 cut(s) 111, 516, 582
HincII GTYRAC 1 cut(s) 326
HindII GTYRAC 1 cut(s) 326
HindIII AAGCTT 1 cut(s) 573
HinfI GANTC 1 cut(s) 101
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 2 cut(s) 125, 326
Hpy188I TCNGA 4 cut(s) 247, 282, 468, 504
Hpy188III TCNNGA 1 cut(s) 253
Hpy8I GTNNAC 2 cut(s) 125, 326
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 3 cut(s) 19, 298, 448
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 5 cut(s) 107, 134, 218, 530, 582
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 494, 536
HpySE526I ACGT 1 cut(s) 302
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 3 cut(s) 111, 516, 582
Kzo9I GATC 3 cut(s) 46, 166, 499
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 2 cut(s) 337, 526
MaeI CTAG 1 cut(s) 321
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 3 cut(s) 13, 298, 311
MalI GATC 3 cut(s) 48, 168, 501
MboI GATC 3 cut(s) 46, 166, 499
MboII GAAGA 1 cut(s) 411
MfeI CAATTG 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 2 cut(s) 219, 274
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 3 cut(s) 149, 365, 373
Mph1103I ATGCAT 1 cut(s) 584
MseI TTAA 1 cut(s) 317
MspR9I CCNGG 2 cut(s) 27, 42
MunI CAATTG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 2 cut(s) 27, 42
MwoI GCNNNNNNNGC 3 cut(s) 185, 494, 536
NdeII GATC 3 cut(s) 46, 166, 499
NlaIII CATG 3 cut(s) 111, 516, 582
NlaIV GGNNCC 1 cut(s) 400
NmuCI GTSAC 2 cut(s) 298, 311
NsiI ATGCAT 1 cut(s) 584
NspI RCATGY 1 cut(s) 516
PciI ACATGT 1 cut(s) 512
PctI GAATGC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 448
PkrI GCNGC 2 cut(s) 352, 541
PscI ACATGT 1 cut(s) 512
Psp6I CCWGG 2 cut(s) 25, 40
PspEI GGTNACC 1 cut(s) 13
PspGI CCWGG 2 cut(s) 25, 40
PspN4I GGNNCC 1 cut(s) 400
RsaI GTAC 1 cut(s) 492
RsaNI GTAC 1 cut(s) 491
SalI GTCGAC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 2 cut(s) 351, 540
Sau3AI GATC 3 cut(s) 46, 166, 499
ScaI AGTACT 1 cut(s) 492
ScrFI CCNGG 2 cut(s) 27, 42
SduI GDGCHC 1 cut(s) 245
SetI ASST 5 cut(s) 196, 234, 305, 333, 577
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 2 cut(s) 219, 274
SsiI CCGC 2 cut(s) 23, 179
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 2 cut(s) 25, 40
StyI CCWWGG 1 cut(s) 367
TaaI ACNGT 3 cut(s) 19, 298, 448
TaiI ACGT 1 cut(s) 305
TaqI TCGA 1 cut(s) 325
TasI AATT 2 cut(s) 219, 274
TatI WGTACW 1 cut(s) 490
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 2 cut(s) 132, 453
TseFI GTSAC 2 cut(s) 298, 311
TseI GCWGC 2 cut(s) 350, 539
Tsp45I GTSAC 2 cut(s) 298, 311
TspDTI ATGAA 3 cut(s) 272, 491, 567
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 2 cut(s) 132, 453
Van91I CCANNNNNTGG 1 cut(s) 448
XceI RCATGY 1 cut(s) 516
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 325
XspI CTAG 1 cut(s) 321
ZraI GACGTC 1 cut(s) 303
ZrmI AGTACT 1 cut(s) 492
Zsp2I ATGCAT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.