RchiOBHm_Chr5g0059951

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000079
Physical Location & Seq
Reverse (-)
65045822 .. 65048410
2589 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33651

Sequence Viewer

Length: 1371 bp
ATGGATTCGATGGCAAAGCCTGAAGCAAGAGACCAAGATAGGATCAGTAAATTACCAAATGAAGTTGTTTATTGCATACTTTCCTTCCTTCCCACAGTAGATGCTGTCAGGACCACCGTGTTGTCTAAAAGATGGAGCCAAATGTGGGCGAAGCTTAAAACTCTGAACTTCGAAAGCAATAAAAAGGAATTTCGGGACTATGAAGAGGCTTTTAGTTTCGTAACATTTGTCACTCGTGTACTCTTCTTTCGTAAAGTACCAGAGATACATAAATTCCGTCTAAAAATGCCCTATCCCCAGTATATACCTCATATTGAGGACTGGGTTTTCACTGCTGTTATCCGTAATGTTGTCGAGCTTGATCTTCATGTTTTTGAAACTGGGGTTGATGTTTTTGTGTTACCTGAGTGCATTTATTGGTGCAAAACTCTGAGGGTTTTGAAACTCCATCTGACGCCCTGGACGCGCACCGATGATCCTCCTGCATCCGGCTGTTTCCCAAGTCTCAAGTTTCTCCATGTATCAGTTTATAATCCTCAGGAAACAACTATGAATTTGCTTTTCTCTTGCTGCCCCGTACTTGAAGGTTTGACAATAGATGGAACCATTGATGGGAACACTGGTGATCATGTGAATTACAATTTCAAGGTCTCTGCACCGGAACTGAAGACATTGAGGATAAGTTTGGAAAATATATGTGAGCCTGTCGATGTTCATATTAATGCCCCTAAGCTTGAAAACCTTGATCTGAAGCGTCTTGGTTTGACCAACTGTTTTCTCATTGGGAGTACAAAATCCCTAGTCAATGCCAGTATTGCTTTCAGAGAACACTTTGAAGTAGACAAAAAGCTTGATCTTTCCACCTTTGCAATGGCGCTTGTGGATCGAATTTCTAATGTTAAATTTCTATCTCTTTCAGCTCATTGCTTGGAGGACTTGCATCTCCCTGAGGATTGGCATCTCCCCATTTTTCATAATGTGAACCAATTGAGGCTGGCTTTTTCGGAACACAATTTGTTGGAATTGTTAGCGGTTTTTCTCAGTAGTGCACCTACTCTGGAAGATCTTGTCTTAGAAGATAGAACTGAAGGTTACACAGAACTGTCAGAGAGTCACTGGAATCCACCCGAGGAGGTGCCTGCTGGTTTATCATCAAACCTAAAGACCATCTCCTTTAAGGGATTCAAGGGAAGGCTGTTTGAGATGGAAATGATAAAGTATCTTTTGAAGAATGGTCAACTGTTGAATAAGATGACGATTTCTACAAGTCTGCATCTTTCGTATGATAGACGGAATGAGTTATACACAGAGTTTATGATGTTCCATAGGGCAGCAACTTGTCATGTTGAGTTAATGCACATGCAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

456

Amino Acids

52.68

Weight (kDa)

5.99

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 53 2.4e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 101 - 425 1.6e-06 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 106 - 251 3.4e-12 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 376 - 420 6.9e-12 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
AccB1I GGYRCC 1 cut(s) 1135
AccI GTMKAC 1 cut(s) 840
AccII CGCG 1 cut(s) 466
AciI CCGC 1 cut(s) 1031
AclWI GGATC 3 cut(s) 50, 470, 891
AcsI RAATTY 5 cut(s) 188, 272, 553, 888, 902
AcuI CTGAAG 4 cut(s) 42, 686, 770, 1107
AcyI GRCGYC 1 cut(s) 455
AfaI GTAC 4 cut(s) 240, 258, 579, 790
AfiI CCNNNNNNNGG 3 cut(s) 145, 488, 612
AgsI TTSAA 9 cut(s) 377, 442, 584, 646, 737, 836, 1186, 1228, 1246
AjnI CCWGG 1 cut(s) 458
AluBI AGCT 5 cut(s) 154, 358, 733, 850, 920
AluI AGCT 5 cut(s) 154, 358, 733, 850, 920
Alw21I GWGCWC 1 cut(s) 1051
Alw26I GTCTC 3 cut(s) 24, 509, 655
Alw44I GTGCAC 1 cut(s) 1047
AlwI GGATC 3 cut(s) 50, 470, 891
Ama87I CYCGRG 1 cut(s) 1127
ApaLI GTGCAC 1 cut(s) 1047
ApeKI GCWGC 2 cut(s) 570, 1331
ApoI RAATTY 5 cut(s) 188, 272, 553, 888, 902
AseI ATTAAT 1 cut(s) 720
AspLEI GCGC 2 cut(s) 468, 877
AspS9I GGNCC 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 635
AsuII TTCGAA 1 cut(s) 171
AvaI CYCGRG 1 cut(s) 1127
AvaII GGWCC 1 cut(s) 111
AxyI CCTNAGG 2 cut(s) 537, 948
BaeGI GKGCMC 1 cut(s) 1051
BanI GGYRCC 1 cut(s) 1135
BauI CACGAG 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 674
Bbv12I GWGCWC 1 cut(s) 1051
BbvI GCAGC 2 cut(s) 557, 1343
BccI CCATC 7 cut(s) 4, 126, 456, 593, 605, 1175, 1198
BciT130I CCWGG 1 cut(s) 460
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 3 cut(s) 24, 509, 655
BfaI CTAG 1 cut(s) 800
BfoI RGCGCY 1 cut(s) 878
BglII AGATCT 1 cut(s) 1063
BisI GCNGC 2 cut(s) 571, 1332
BlsI GCNGC 2 cut(s) 572, 1333
Bme1390I CCNGG 1 cut(s) 460
Bme18I GGWCC 1 cut(s) 111
BmeT110I CYCGRG 1 cut(s) 1127
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 3 cut(s) 137, 604, 1137
BmrFI CCNGG 1 cut(s) 460
BmrI ACTGGG 3 cut(s) 292, 331, 390
BmsI GCATC 5 cut(s) 91, 494, 949, 967, 1282
BmuI ACTGGG 3 cut(s) 292, 331, 390
BpiI GAAGAC 1 cut(s) 674
Bpu10I CCTNAGC 1 cut(s) 729
Bpu14I TTCGAA 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 491
BsaBI GATNNNNATC 1 cut(s) 957
BsaHI GRCGYC 1 cut(s) 455
BsaI GGTCTC 2 cut(s) 24, 655
BsaJI CCNNGG 2 cut(s) 458, 1128
BsaWI WCCGGW 1 cut(s) 658
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 488, 612
Bse1I ACTGG 6 cut(s) 298, 326, 385, 625, 810, 1121
Bse21I CCTNAGG 2 cut(s) 537, 948
Bse3DI GCAATG 2 cut(s) 876, 922
Bse8I GATNNNNATC 1 cut(s) 957
BseBI CCWGG 1 cut(s) 460
BseDI CCNNGG 2 cut(s) 458, 1128
BseGI GGATG 1 cut(s) 485
BseJI GATNNNNATC 1 cut(s) 957
BseLI CCNNNNNNNGG 3 cut(s) 145, 488, 612
BseMI GCAATG 2 cut(s) 876, 922
BseMII CTCAG 5 cut(s) 396, 422, 551, 939, 1054
BseNI ACTGG 6 cut(s) 298, 326, 385, 625, 810, 1121
BseRI GAGGAG 1 cut(s) 1145
BseSI GKGCMC 1 cut(s) 1051
BseXI GCAGC 2 cut(s) 557, 1343
BsgI GTGCAG 1 cut(s) 639
Bsh1236I CGCG 1 cut(s) 466
BshNI GGYRCC 1 cut(s) 1135
BsiHKAI GWGCWC 1 cut(s) 1051
BsiHKCI CYCGRG 1 cut(s) 1127
BsiSI CCGG 2 cut(s) 489, 659
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 3 cut(s) 145, 488, 612
BsmAI GTCTC 3 cut(s) 24, 509, 655
BsmFI GGGAC 1 cut(s) 209
Bso31I GGTCTC 2 cut(s) 24, 655
BsoBI CYCGRG 1 cut(s) 1127
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 1051
Bsp143I GATC 8 cut(s) 42, 361, 475, 625, 745, 853, 883, 1063
BspACI CCGC 1 cut(s) 1031
BspCNI CTCAG 5 cut(s) 397, 423, 550, 940, 1053
BspFNI CGCG 1 cut(s) 466
BspLI GGNNCC 3 cut(s) 137, 604, 1137
BspPI GGATC 3 cut(s) 50, 470, 891
BspT104I TTCGAA 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 1135
BspTNI GGTCTC 2 cut(s) 24, 655
BsrDI GCAATG 2 cut(s) 876, 922
BsrI ACTGG 6 cut(s) 298, 326, 385, 625, 810, 1121
BssECI CCNNGG 2 cut(s) 458, 1128
BssMI GATC 8 cut(s) 42, 361, 475, 625, 745, 853, 883, 1063
BssNI GRCGYC 1 cut(s) 455
BssSI CACGAG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 460
Bst4CI ACNGT 5 cut(s) 97, 118, 773, 1104, 1242
Bst6I CTCTTC 2 cut(s) 198, 248
BstACI GRCGYC 1 cut(s) 455
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 2 cut(s) 996, 1140
BstDEI CTNAG 7 cut(s) 405, 431, 537, 729, 948, 1040, 1072
BstF5I GGATG 1 cut(s) 485
BstFNI CGCG 1 cut(s) 466
BstH2I RGCGCY 1 cut(s) 878
BstHHI GCGC 2 cut(s) 468, 877
BstKTI GATC 8 cut(s) 45, 364, 478, 628, 748, 856, 886, 1066
BstMAI GTCTC 3 cut(s) 24, 509, 655
BstMBI GATC 8 cut(s) 42, 361, 475, 625, 745, 853, 883, 1063
BstMWI GCNNNNNNNGC 2 cut(s) 463, 815
BstNI CCWGG 1 cut(s) 460
BstNSI RCATGY 1 cut(s) 1363
BstSCI CCNGG 1 cut(s) 458
BstSLI GKGCMC 1 cut(s) 1051
BstUI CGCG 1 cut(s) 466
BstV1I GCAGC 2 cut(s) 557, 1343
BstV2I GAAGAC 1 cut(s) 674
BstX2I RGATCY 1 cut(s) 1063
BstYI RGATCY 1 cut(s) 1063
Bsu36I CCTNAGG 2 cut(s) 537, 948
BtsCI GGATG 1 cut(s) 485
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 3 cut(s) 330, 618, 1114
Cac8I GCNNGC 2 cut(s) 996, 1140
CfoI GCGC 2 cut(s) 468, 877
Cfr13I GGNCC 1 cut(s) 111
CseI GACGC 3 cut(s) 463, 472, 743
Csp6I GTAC 4 cut(s) 239, 257, 578, 789
CviAII CATG 5 cut(s) 368, 518, 629, 1343, 1360
CviQI GTAC 4 cut(s) 239, 257, 578, 789
DdeI CTNAG 7 cut(s) 405, 431, 537, 729, 948, 1040, 1072
DpnI GATC 8 cut(s) 44, 363, 477, 627, 747, 855, 885, 1065
DpnII GATC 8 cut(s) 42, 361, 475, 625, 745, 853, 883, 1063
Eam1104I CTCTTC 2 cut(s) 198, 248
EarI CTCTTC 2 cut(s) 198, 248
Eco31I GGTCTC 2 cut(s) 24, 655
Eco47I GGWCC 1 cut(s) 111
Eco57I CTGAAG 4 cut(s) 42, 686, 770, 1107
Eco81I CCTNAGG 2 cut(s) 537, 948
Eco88I CYCGRG 1 cut(s) 1127
EcoRII CCWGG 1 cut(s) 458
FaeI CATG 5 cut(s) 371, 521, 632, 1346, 1363
FaqI GGGAC 1 cut(s) 209
FatI CATG 5 cut(s) 367, 517, 628, 1342, 1359
FbaI TGATCA 1 cut(s) 625
FblI GTMKAC 1 cut(s) 840
Fnu4HI GCNGC 2 cut(s) 571, 1332
FokI GGATG 1 cut(s) 472
Fsp4HI GCNGC 2 cut(s) 571, 1332
FspBI CTAG 1 cut(s) 800
GlaI GCGC 2 cut(s) 467, 876
GluI GCNGC 2 cut(s) 571, 1332
HaeII RGCGCY 1 cut(s) 878
HapII CCGG 2 cut(s) 489, 659
HgaI GACGC 3 cut(s) 463, 472, 743
HhaI GCGC 2 cut(s) 468, 877
Hin1I GRCGYC 1 cut(s) 455
Hin1II CATG 5 cut(s) 371, 521, 632, 1346, 1363
Hin6I GCGC 2 cut(s) 466, 875
HinP1I GCGC 2 cut(s) 466, 875
HincII GTYRAC 1 cut(s) 1238
HindII GTYRAC 1 cut(s) 1238
HindIII AAGCTT 3 cut(s) 152, 731, 848
HinfI GANTC 4 cut(s) 5, 1111, 1120, 1182
HpaII CCGG 2 cut(s) 489, 659
HphI GGTGA 1 cut(s) 635
Hpy166II GTNNAC 5 cut(s) 239, 841, 982, 1049, 1238
Hpy188I TCNGA 7 cut(s) 165, 432, 453, 750, 824, 1006, 1108
Hpy188III TCNNGA 4 cut(s) 109, 194, 539, 1058
Hpy8I GTNNAC 5 cut(s) 239, 841, 982, 1049, 1238
HpyAV CCTTC 5 cut(s) 94, 98, 578, 1082, 1185
HpyCH4III ACNGT 5 cut(s) 97, 118, 773, 1104, 1242
HpyF10VI GCNNNNNNNGC 2 cut(s) 463, 815
HpyF3I CTNAG 7 cut(s) 405, 431, 537, 729, 948, 1040, 1072
Hsp92I GRCGYC 1 cut(s) 455
Hsp92II CATG 5 cut(s) 371, 521, 632, 1346, 1363
HspAI GCGC 2 cut(s) 466, 875
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 8 cut(s) 42, 361, 475, 625, 745, 853, 883, 1063
LmnI GCTCC 1 cut(s) 135
Lsp1109I GCAGC 2 cut(s) 557, 1343
LweI GCATC 5 cut(s) 91, 494, 949, 967, 1282
MaeI CTAG 1 cut(s) 800
MaeIII GTNAC 5 cut(s) 220, 229, 399, 1091, 1112
MalI GATC 8 cut(s) 44, 363, 477, 627, 747, 855, 885, 1065
MboI GATC 8 cut(s) 42, 361, 475, 625, 745, 853, 883, 1063
MboII GAAGA 7 cut(s) 215, 235, 356, 679, 1073, 1088, 1240
MfeI CAATTG 1 cut(s) 986
MflI RGATCY 1 cut(s) 1063
MhlI GDGCHC 1 cut(s) 1051
MlyI GAGTC 1 cut(s) 1120
MmeI TCCRAC 1 cut(s) 999
MseI TTAA 5 cut(s) 156, 720, 900, 1176, 1352
MslI CAYNNNNRTG 1 cut(s) 720
MspI CCGG 2 cut(s) 489, 659
MspR9I CCNGG 1 cut(s) 460
MunI CAATTG 1 cut(s) 986
MvaI CCWGG 1 cut(s) 460
MvnI CGCG 1 cut(s) 466
MwoI GCNNNNNNNGC 2 cut(s) 463, 815
NdeII GATC 8 cut(s) 42, 361, 475, 625, 745, 853, 883, 1063
NlaIII CATG 5 cut(s) 371, 521, 632, 1346, 1363
NlaIV GGNNCC 3 cut(s) 137, 604, 1137
NmuCI GTSAC 2 cut(s) 229, 1112
NspI RCATGY 1 cut(s) 1363
NspV TTCGAA 1 cut(s) 171
PfeI GAWTC 3 cut(s) 5, 1120, 1182
PkrI GCNGC 2 cut(s) 572, 1333
PleI GAGTC 1 cut(s) 1119
PpsI GAGTC 1 cut(s) 1119
PshBI ATTAAT 1 cut(s) 720
PsiI TTATAA 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 458
PspGI CCWGG 1 cut(s) 458
PspN4I GGNNCC 3 cut(s) 137, 604, 1137
PspPI GGNCC 1 cut(s) 111
PsuI RGATCY 1 cut(s) 1063
RsaI GTAC 4 cut(s) 240, 258, 579, 790
RsaNI GTAC 4 cut(s) 239, 257, 578, 789
RseI CAYNNNNRTG 1 cut(s) 720
SaqAI TTAA 5 cut(s) 156, 720, 900, 1176, 1352
SatI GCNGC 2 cut(s) 571, 1332
Sau3AI GATC 8 cut(s) 42, 361, 475, 625, 745, 853, 883, 1063
Sau96I GGNCC 1 cut(s) 111
SchI GAGTC 1 cut(s) 1120
ScrFI CCNGG 1 cut(s) 460
SduI GDGCHC 1 cut(s) 1051
SfaNI GCATC 5 cut(s) 91, 494, 949, 967, 1282
SfuI TTCGAA 1 cut(s) 171
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 720
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
SsiI CCGC 1 cut(s) 1031
SspMI CTAG 1 cut(s) 800
StyD4I CCNGG 1 cut(s) 458
TaaI ACNGT 5 cut(s) 97, 118, 773, 1104, 1242
TaqI TCGA 5 cut(s) 8, 171, 354, 708, 886
TatI WGTACW 2 cut(s) 238, 788
TfiI GAWTC 3 cut(s) 5, 1120, 1182
Tru1I TTAA 5 cut(s) 156, 720, 900, 1176, 1352
Tru9I TTAA 5 cut(s) 156, 720, 900, 1176, 1352
TscAI CASTG 3 cut(s) 337, 625, 1121
TseFI GTSAC 2 cut(s) 229, 1112
TseI GCWGC 2 cut(s) 570, 1331
Tsp45I GTSAC 2 cut(s) 229, 1112
TspDTI ATGAA 6 cut(s) 75, 216, 356, 566, 704, 962
TspGWI ACGGA 3 cut(s) 266, 332, 1306
TspRI CASTG 3 cut(s) 337, 625, 1121
VneI GTGCAC 1 cut(s) 1047
VpaK11BI GGWCC 1 cut(s) 111
VspI ATTAAT 1 cut(s) 720
XapI RAATTY 5 cut(s) 188, 272, 553, 888, 902
XceI RCATGY 1 cut(s) 1363
XcmI CCANNNNNNNNNTGG 1 cut(s) 868
XmiI GTMKAC 1 cut(s) 840
XspI CTAG 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.