Rroxscaffold_6G00419310

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000079
Physical Location & Seq
Reverse (-)
40785732 .. 40787879
2148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419310.1

Sequence Viewer

Length: 1437 bp
ATGAAAATGGGTTCGAACTCAAAGCGTCGAAAACGATGCACCGAAGATAGACTCAGTGAATTGCCAGATGCAATTCTTTGCCACATTCTGTCTTTCCTTTCAACAGTTGAGGCTGTAAAGACCAGTGTCTTATCACATAGATGGGAGAATGTGTGGGCTTCTGTGCCCACTATAGACGTATGTGATTATGATCCAAAAGAATTCGACTGCGATAGTTTTTCGATGTTTCTTGATAATGTACTTTTCGCTCATGACTCCTTGAAAGTTCATCGGTTCCGTATTTGCTGTACTAAGATGGTGGATCCCCTTCTGTTTGATTATTGGACTAGCACTGCCATTGGCTGCAATGTTGTTGAACTCGATCTTGGTATTATTCCCATGGGTTCTGTGTACTCGTCACTTCCGCCCCAGTGTTTCGAGTTGCCAGGAAGCCTTTTCGTGATGAAAAGTTTGGAGAAGTTGAAGCTGAGCCTGCAATCGTTTATCACCATTACTCCTGAACCAAATTGGTTCCCAAGTCTCAAGTTTCTCCATGTTTCAGTCTCATTTGCTGGTTCTCATCTGATGGAGAACCTCTTTTCTTGCTGCCCTGTACTTGAAGAGTTGATTTTTAATGCGGACCCTGAATATGATGATGAGTCAGTTTTTAATATTAACATCTCTGCACCGAAGCTGAAAAGACTACAAATAAGCTTGTTCCTGGAAACATATGATCTAGAGGTAGTAGAATATGAGCACAAACTTTTTATCAATGCCAATGCTCCAAATCTTGAAAAGTTCACTTTCGACGGCAATCTTTTGGCAATCTATTCCTCGAGCAATGCAAAATCCCTGACCGAAGCCAAGATTGATTGCGCGGACCTGCATGCGGGTCAAGAGCTTGAGTATCACCTTGATGCTGCTGATAATTTGCACAGGCTTTTCACAGGAATTTTGAATGTTACTTACCTGTCAGTTTCAGCTCCTATTTTTGGGGATCCCCACATTGTACATCAGTATCATCTCCCTGCATTTGTTAATTTGAAGCACTTGAAGCTACTTCTTCAAGCTTGCTGCTCTTGGCAACCATTGATTAGTTTTCTGAATGCATCACCAAATCTGGAATCTCTTGTCTTGAAAAAGAGCCGCGATTGCCTATGTCGACACGATCCGGATGAATTACATCATGAATGGAATCCACCAGAGTATGTGCCTGTTTGTTTGGTGTCACACTTGAAGACTATTTGCATACGTGGGTACCGGGGGAGGCCAGATCAGATGAAAGTGGCAGAATACTTGTTGAAGCACGGTGAGATTTTGGATAAGGTGACAGTTCATCGGTCTTCCAAATGTATCTCTTCAAAAAAAGAGAAGAAATTATGGCGGGGATTGAAGAAGTTGCCAAGGGGTTCGAATACTTGTCAAATTGAATTTCCATGCCTCTCTGTCACAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

478

Amino Acids

54.37

Weight (kDa)

6.2

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 56 1.7e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 87 - 446 9.2e-14 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 108 - 267 2.6e-09 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 394 - 437 2.6e-14 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 870
Acc65I GGTACC 1 cut(s) 1236
AccB1I GGYRCC 1 cut(s) 1236
AccI GTMKAC 1 cut(s) 1141
AccII CGCG 2 cut(s) 857, 1128
AccIII TCCGGA 1 cut(s) 1150
AciI CCGC 6 cut(s) 404, 617, 857, 869, 1126, 1363
AclWI GGATC 6 cut(s) 185, 296, 309, 971, 984, 1142
AcsI RAATTY 3 cut(s) 200, 930, 1409
AfaI GTAC 6 cut(s) 240, 289, 392, 594, 990, 1238
AfiI CCNNNNNNNGG 2 cut(s) 868, 971
AjnI CCWGG 2 cut(s) 424, 699
AjuI GAANNNNNNNTTGG 2 cut(s) 348, 380
AluBI AGCT 7 cut(s) 466, 673, 693, 880, 962, 1036, 1049
AluI AGCT 7 cut(s) 466, 673, 693, 880, 962, 1036, 1049
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 2 cut(s) 524, 547
AlwI GGATC 6 cut(s) 185, 296, 309, 971, 984, 1142
Ama87I CYCGRG 1 cut(s) 814
Aor13HI TCCGGA 1 cut(s) 1150
AoxI GGCC 1 cut(s) 1247
ApeKI GCWGC 4 cut(s) 342, 585, 899, 1053
ApoI RAATTY 3 cut(s) 200, 930, 1409
Asp718I GGTACC 1 cut(s) 1236
AspLEI GCGC 1 cut(s) 857
AspS9I GGNCC 2 cut(s) 619, 859
AsuC2I CCSGG 1 cut(s) 1241
AsuHPI GGTGA 5 cut(s) 478, 881, 1083, 1301, 1318
AsuII TTCGAA 2 cut(s) 14, 1391
AvaI CYCGRG 1 cut(s) 814
AvaII GGWCC 2 cut(s) 619, 859
BaeGI GKGCMC 1 cut(s) 168
BaeI ACNNNNGTAYC 4 cut(s) 980, 1013, 1220, 1253
BamHI GGATCC 2 cut(s) 301, 976
BanI GGYRCC 1 cut(s) 1236
BbsI GAAGAC 2 cut(s) 1223, 1314
Bbv12I GWGCWC 1 cut(s) 738
BbvI GCAGC 4 cut(s) 329, 572, 886, 1040
BccI CCATC 3 cut(s) 135, 289, 559
BceAI ACGGC 1 cut(s) 805
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 2 cut(s) 426, 701
BcnI CCSGG 1 cut(s) 1241
BcoDI GTCTC 2 cut(s) 524, 547
BfaI CTAG 2 cut(s) 327, 716
BfmI CTRYAG 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 870
BisI GCNGC 5 cut(s) 343, 586, 900, 1054, 1126
BlpI GCTNAGC 1 cut(s) 467
BlsI GCNGC 5 cut(s) 344, 587, 901, 1055, 1127
Bme1390I CCNGG 3 cut(s) 426, 701, 1241
Bme18I GGWCC 2 cut(s) 619, 859
BmeT110I CYCGRG 1 cut(s) 814
BmgT120I GGNCC 2 cut(s) 619, 859
BmiI GGNNCC 6 cut(s) 275, 303, 512, 621, 978, 1238
BmrFI CCNGG 3 cut(s) 426, 701, 1241
BmrI ACTGGG 1 cut(s) 403
BmsI GCATC 4 cut(s) 26, 58, 886, 1097
BmuI ACTGGG 1 cut(s) 403
BoxI GACNNNNGTC 1 cut(s) 125
BpiI GAAGAC 2 cut(s) 1223, 1314
Bpu1102I GCTNAGC 1 cut(s) 467
Bpu14I TTCGAA 2 cut(s) 14, 1391
BpuEI CTTGAG 2 cut(s) 506, 902
BpuMI CCSGG 1 cut(s) 1241
BsaAI YACGTR 1 cut(s) 1232
BsaBI GATNNNNATC 1 cut(s) 189
BsaJI CCNNGG 3 cut(s) 378, 1240, 1382
BsaWI WCCGGW 1 cut(s) 1150
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 478, 508
Bsc4I CCNNNNNNNGG 2 cut(s) 868, 971
Bse1I ACTGG 2 cut(s) 123, 409
Bse3DI GCAATG 2 cut(s) 352, 826
Bse8I GATNNNNATC 1 cut(s) 189
BseAI TCCGGA 1 cut(s) 1150
BseBI CCWGG 2 cut(s) 426, 701
BseDI CCNNGG 3 cut(s) 378, 1240, 1382
BseGI GGATG 1 cut(s) 1159
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 868, 971
BseMI GCAATG 2 cut(s) 352, 826
BseMII CTCAG 2 cut(s) 67, 458
BseNI ACTGG 2 cut(s) 123, 409
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 4 cut(s) 329, 572, 886, 1040
BsgI GTGCAG 1 cut(s) 648
Bsh1236I CGCG 2 cut(s) 857, 1128
BshFI GGCC 1 cut(s) 1249
BshNI GGYRCC 1 cut(s) 1236
BsiHKAI GWGCWC 1 cut(s) 738
BsiHKCI CYCGRG 1 cut(s) 814
BsiSI CCGG 2 cut(s) 1151, 1240
BslI CCNNNNNNNGG 2 cut(s) 868, 971
BsmAI GTCTC 2 cut(s) 524, 547
BsmI GAATGC 1 cut(s) 1090
BsnI GGCC 1 cut(s) 1249
BsoBI CYCGRG 1 cut(s) 814
Bsp119I TTCGAA 2 cut(s) 14, 1391
Bsp1286I GDGCHC 2 cut(s) 168, 738
Bsp13I TCCGGA 1 cut(s) 1150
Bsp1407I TGTACA 1 cut(s) 988
Bsp143I GATC 7 cut(s) 190, 301, 361, 712, 976, 1147, 1252
Bsp1720I GCTNAGC 1 cut(s) 467
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 6 cut(s) 404, 617, 857, 869, 1126, 1363
BspANI GGCC 1 cut(s) 1249
BspCNI CTCAG 2 cut(s) 66, 459
BspEI TCCGGA 1 cut(s) 1150
BspFNI CGCG 2 cut(s) 857, 1128
BspHI TCATGA 2 cut(s) 250, 1165
BspLI GGNNCC 6 cut(s) 275, 303, 512, 621, 978, 1238
BspMI ACCTGC 1 cut(s) 870
BspPI GGATC 6 cut(s) 185, 296, 309, 971, 984, 1142
BspT104I TTCGAA 2 cut(s) 14, 1391
BspT107I GGYRCC 1 cut(s) 1236
BsrDI GCAATG 2 cut(s) 352, 826
BsrGI TGTACA 1 cut(s) 988
BsrI ACTGG 2 cut(s) 123, 409
BssECI CCNNGG 3 cut(s) 378, 1240, 1382
BssMI GATC 7 cut(s) 190, 301, 361, 712, 976, 1147, 1252
BssT1I CCWWGG 2 cut(s) 378, 1382
Bst2UI CCWGG 2 cut(s) 426, 701
Bst4CI ACNGT 3 cut(s) 106, 1289, 1312
Bst6I CTCTTC 2 cut(s) 594, 1342
BstAUI TGTACA 1 cut(s) 988
BstBAI YACGTR 1 cut(s) 1232
BstBI TTCGAA 2 cut(s) 14, 1391
BstC8I GCNNGC 3 cut(s) 473, 867, 1051
BstDEI CTNAG 3 cut(s) 53, 291, 467
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 1 cut(s) 1159
BstFNI CGCG 2 cut(s) 857, 1128
BstHHI GCGC 1 cut(s) 857
BstKTI GATC 7 cut(s) 193, 304, 364, 715, 979, 1150, 1255
BstMAI GTCTC 2 cut(s) 524, 547
BstMBI GATC 7 cut(s) 190, 301, 361, 712, 976, 1147, 1252
BstMWI GCNNNNNNNGC 3 cut(s) 472, 1033, 1131
BstNI CCWGG 2 cut(s) 426, 701
BstNSI RCATGY 1 cut(s) 869
BstPAI GACNNNNGTC 1 cut(s) 125
BstSCI CCNGG 3 cut(s) 424, 699, 1239
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 168
BstUI CGCG 2 cut(s) 857, 1128
BstV1I GCAGC 4 cut(s) 329, 572, 886, 1040
BstV2I GAAGAC 2 cut(s) 1223, 1314
BstX2I RGATCY 2 cut(s) 301, 976
BstYI RGATCY 2 cut(s) 301, 976
BsuRI GGCC 1 cut(s) 1249
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 1 cut(s) 1159
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 4 cut(s) 61, 130, 330, 416
BveI ACCTGC 1 cut(s) 870
Cac8I GCNNGC 3 cut(s) 473, 867, 1051
CciI TCATGA 2 cut(s) 250, 1165
CfoI GCGC 1 cut(s) 857
Cfr13I GGNCC 2 cut(s) 619, 859
CseI GACGC 1 cut(s) 14
Csp6I GTAC 6 cut(s) 239, 288, 391, 593, 989, 1237
CviAII CATG 6 cut(s) 251, 379, 533, 866, 1166, 1416
CviQI GTAC 6 cut(s) 239, 288, 391, 593, 989, 1237
DdeI CTNAG 3 cut(s) 53, 291, 467
DpnI GATC 7 cut(s) 192, 303, 363, 714, 978, 1149, 1254
DpnII GATC 7 cut(s) 190, 301, 361, 712, 976, 1147, 1252
Eam1104I CTCTTC 2 cut(s) 594, 1342
EarI CTCTTC 2 cut(s) 594, 1342
EciI GGCGGA 1 cut(s) 393
Eco130I CCWWGG 2 cut(s) 378, 1382
Eco47I GGWCC 2 cut(s) 619, 859
Eco88I CYCGRG 1 cut(s) 814
EcoRI GAATTC 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 424, 699
EcoT14I CCWWGG 2 cut(s) 378, 1382
EcoT22I ATGCAT 1 cut(s) 1090
ErhI CCWWGG 2 cut(s) 378, 1382
FaeI CATG 6 cut(s) 254, 382, 536, 869, 1169, 1419
FatI CATG 6 cut(s) 250, 378, 532, 865, 1165, 1415
FauI CCCGC 2 cut(s) 862, 1356
FauNDI CATATG 1 cut(s) 709
FblI GTMKAC 1 cut(s) 1141
Fnu4HI GCNGC 5 cut(s) 343, 586, 900, 1054, 1126
FokI GGATG 1 cut(s) 1166
Fsp4HI GCNGC 5 cut(s) 343, 586, 900, 1054, 1126
FspBI CTAG 2 cut(s) 327, 716
GlaI GCGC 1 cut(s) 856
GluI GCNGC 5 cut(s) 343, 586, 900, 1054, 1126
HaeIII GGCC 1 cut(s) 1249
HapII CCGG 2 cut(s) 1151, 1240
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 857
Hin1II CATG 6 cut(s) 254, 382, 536, 869, 1169, 1419
Hin6I GCGC 1 cut(s) 855
HinP1I GCGC 1 cut(s) 855
HincII GTYRAC 1 cut(s) 1142
HindII GTYRAC 1 cut(s) 1142
HindIII AAGCTT 2 cut(s) 691, 1047
HinfI GANTC 5 cut(s) 51, 254, 638, 1103, 1174
HpaII CCGG 2 cut(s) 1151, 1240
HphI GGTGA 5 cut(s) 478, 881, 1083, 1301, 1318
Hpy166II GTNNAC 3 cut(s) 391, 780, 1142
Hpy188I TCNGA 3 cut(s) 564, 1083, 1257
Hpy8I GTNNAC 3 cut(s) 391, 780, 1142
Hpy99I CGWCG 2 cut(s) 30, 791
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 3 cut(s) 106, 1289, 1312
HpyCH4IV ACGT 2 cut(s) 177, 1231
HpyF10VI GCNNNNNNNGC 3 cut(s) 472, 1033, 1131
HpyF3I CTNAG 3 cut(s) 53, 291, 467
HpySE526I ACGT 2 cut(s) 177, 1231
Hsp92II CATG 6 cut(s) 254, 382, 536, 869, 1169, 1419
HspAI GCGC 1 cut(s) 855
Kpn2I TCCGGA 1 cut(s) 1150
KpnI GGTACC 1 cut(s) 1240
Kzo9I GATC 7 cut(s) 190, 301, 361, 712, 976, 1147, 1252
LmnI GCTCC 2 cut(s) 766, 967
Lsp1109I GCAGC 4 cut(s) 329, 572, 886, 1040
LweI GCATC 4 cut(s) 26, 58, 886, 1097
MaeI CTAG 2 cut(s) 327, 716
MaeII ACGT 2 cut(s) 177, 1231
MaeIII GTNAC 5 cut(s) 396, 940, 1206, 1306, 1426
MalI GATC 7 cut(s) 192, 303, 363, 714, 978, 1149, 1254
MboI GATC 7 cut(s) 190, 301, 361, 712, 976, 1147, 1252
MboII GAAGA 8 cut(s) 56, 611, 1034, 1228, 1314, 1329, 1363, 1384
MflI RGATCY 2 cut(s) 301, 976
MhlI GDGCHC 2 cut(s) 168, 738
MlyI GAGTC 3 cut(s) 45, 248, 647
MnlI CCTC 6 cut(s) 103, 584, 712, 823, 1239, 1430
Mph1103I ATGCAT 1 cut(s) 1090
MroI TCCGGA 1 cut(s) 1150
MseI TTAA 4 cut(s) 612, 648, 654, 1017
MslI CAYNNNNRTG 2 cut(s) 139, 894
MspI CCGG 2 cut(s) 1151, 1240
MspR9I CCNGG 3 cut(s) 426, 701, 1241
Mva1269I GAATGC 1 cut(s) 1090
MvaI CCWGG 2 cut(s) 426, 701
MvnI CGCG 2 cut(s) 857, 1128
MwoI GCNNNNNNNGC 3 cut(s) 472, 1033, 1131
NciI CCSGG 1 cut(s) 1241
NcoI CCATGG 1 cut(s) 378
NdeI CATATG 1 cut(s) 709
NdeII GATC 7 cut(s) 190, 301, 361, 712, 976, 1147, 1252
NlaIII CATG 6 cut(s) 254, 382, 536, 869, 1169, 1419
NlaIV GGNNCC 6 cut(s) 275, 303, 512, 621, 978, 1238
NmuCI GTSAC 4 cut(s) 396, 1206, 1306, 1426
NsiI ATGCAT 1 cut(s) 1090
NspI RCATGY 1 cut(s) 869
NspV TTCGAA 2 cut(s) 14, 1391
PaeI GCATGC 1 cut(s) 869
PaeR7I CTCGAG 1 cut(s) 814
PagI TCATGA 2 cut(s) 250, 1165
PctI GAATGC 1 cut(s) 1090
PfeI GAWTC 2 cut(s) 1103, 1174
PfoI TCCNGGA 1 cut(s) 699
PkrI GCNGC 5 cut(s) 344, 587, 901, 1055, 1127
PleI GAGTC 3 cut(s) 45, 248, 646
PpsI GAGTC 3 cut(s) 45, 248, 646
Ppu21I YACGTR 1 cut(s) 1232
PshAI GACNNNNGTC 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 424, 699
PspGI CCWGG 2 cut(s) 424, 699
PspN4I GGNNCC 6 cut(s) 275, 303, 512, 621, 978, 1238
PspPI GGNCC 2 cut(s) 619, 859
PspXI VCTCGAGB 1 cut(s) 814
PsuI RGATCY 2 cut(s) 301, 976
RsaI GTAC 6 cut(s) 240, 289, 392, 594, 990, 1238
RsaNI GTAC 6 cut(s) 239, 288, 391, 593, 989, 1237
RseI CAYNNNNRTG 2 cut(s) 139, 894
SalI GTCGAC 1 cut(s) 1140
SaqAI TTAA 4 cut(s) 612, 648, 654, 1017
SatI GCNGC 5 cut(s) 343, 586, 900, 1054, 1126
Sau3AI GATC 7 cut(s) 190, 301, 361, 712, 976, 1147, 1252
Sau96I GGNCC 2 cut(s) 619, 859
SchI GAGTC 3 cut(s) 45, 248, 647
ScrFI CCNGG 3 cut(s) 426, 701, 1241
SduI GDGCHC 2 cut(s) 168, 738
SfaNI GCATC 4 cut(s) 26, 58, 886, 1097
SfcI CTRYAG 1 cut(s) 171
Sfr274I CTCGAG 1 cut(s) 814
SfuI TTCGAA 2 cut(s) 14, 1391
SinI GGWCC 2 cut(s) 619, 859
SlaI CTCGAG 1 cut(s) 814
SmiMI CAYNNNNRTG 2 cut(s) 139, 894
SmlI CTYRAG 3 cut(s) 521, 814, 881
SmoI CTYRAG 3 cut(s) 521, 814, 881
SphI GCATGC 1 cut(s) 869
SsiI CCGC 6 cut(s) 404, 617, 857, 869, 1126, 1363
SspI AATATT 1 cut(s) 652
SspMI CTAG 2 cut(s) 327, 716
StyD4I CCNGG 3 cut(s) 424, 699, 1239
StyI CCWWGG 2 cut(s) 378, 1382
TaaI ACNGT 3 cut(s) 106, 1289, 1312
TaiI ACGT 2 cut(s) 180, 1234
TaqII GACCGA 2 cut(s) 851, 1308
TatI WGTACW 5 cut(s) 238, 287, 390, 592, 988
TauI GCSGC 1 cut(s) 1128
TfiI GAWTC 2 cut(s) 1103, 1174
Tru1I TTAA 4 cut(s) 612, 648, 654, 1017
Tru9I TTAA 4 cut(s) 612, 648, 654, 1017
TscAI CASTG 4 cut(s) 61, 130, 337, 416
TseFI GTSAC 4 cut(s) 396, 1206, 1306, 1426
TseI GCWGC 4 cut(s) 342, 585, 899, 1053
Tsp45I GTSAC 4 cut(s) 396, 1206, 1306, 1426
TspDTI ATGAA 7 cut(s) 17, 257, 458, 1170, 1182, 1274, 1304
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 4 cut(s) 61, 130, 337, 416
VpaK11BI GGWCC 2 cut(s) 619, 859
XapI RAATTY 3 cut(s) 200, 930, 1409
XbaI TCTAGA 1 cut(s) 715
XceI RCATGY 1 cut(s) 869
XhoI CTCGAG 1 cut(s) 814
XmiI GTMKAC 1 cut(s) 1141
XspI CTAG 2 cut(s) 327, 716
Zsp2I ATGCAT 1 cut(s) 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.