Rh5DG423900

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000079
Physical Location & Seq
Forward (+)
67573906 .. 67575673
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG423900.1

Sequence Viewer

Length: 1611 bp
ATGCAGCAATATCCATATCCATGGCTTCCTCGTTACGACCGGCCACAACTCCAGTACTCTCACTGGTACCCAGAACCTCTCTCTACATCTCATGCCCCCATATGCGACTCACCATCTATTCCGATTGCAGTTCGAGCTCCGCACCCGGTTACCGTTCCGATCAACTACCCACGATATCGATCCCTGATTCGTGAGAAAGGTGAAGATAGAGATAGGATTAGTGAGTTACCGGATGACCTTATTTGTCACATACTTTCTTTTCTTCCAACAATAACTGCCGTAAGGACAACTGTTTTGTCTAAAAGATGGAACAAGTTGTGGACTTTTGTTCGCCATCTAGACTTCGACTTATATAGAGATCGGCCCGATGGGAAAAAGTACCTTTTTGAGAGATTTGTTGAATTTGTATTTCTCCGTCTTGTTTCACTGGACATTGGAAAATTTCGTCTTAGATATGCCTCTGCCAGCTGGGAAGATGGTTTTTCTCATGTTGATGATTGGGTTTCTGTTGCCGTCTGGCGCAATGTTGTTGAACTTGATCTTAGAATTTTTGATGTTCTTTGTCGCCTACCTAAAAGTATTTTCTGGTGCAAAACCCTCAAGGTTTTGAAACTGTGGATAGATTATATAAATATTCCTGATCCTCCTACAAAAGGGAGTTTCCCAAATCTCAAAATCTTGCATGTCACAGTTACAAATCCTGATGACGAACTGGGAAAACTTCTTTCTTACTTCCCTGTGGTCGAAGATTTGAGCATACACGGACAGTTGAGGTACTGTTACATTTACTATCACAATATCAATCTCAAAGTCTCTTTTCCAGAACTGAAGACGTTGAAATTAAGTACGGAACGTGACGAAATGACAGACTACGAAATGGGACATGATTATGGTGGAACCCTAAATCAGTACCATTTTTGTGTCGATGCCCCAAAGCTTGAAAACCTTGATCTTGTACAGATTCCTTTGTCAAATTATATTTTAGAGAACCCAAAATCCGTAGTCAATGCCAGTATTGCTTTCAAATCCCTTGCTGAAGAAGAATGGTCTTCCTTTCCAGACCGTGCATTCCAGCTTCTTACTGGAATATCTAATGTTAAATGCCTCTCTCTATCGGATCATCCTTTCGAGGCTTCAAATCTCCCTGTTTTTGGTAATTTGAAACAATTGAAGCTGGTTCTTCGTAATTGTAGTAGCTGGGAATTTCTAGCAGCTCTGCTCCATAGAACACCCAATCTGGAAGATCTAGATCTTGTCTTGGAAGATTTAAGTTGTACGTGTACCACATATTGTGGATTCTTATTTCAGGAACTCTTATTTTATGCTCAGAGAACCGGAGGCGAGAAAGATTATCCAGAACTCCAATGGACTCCACCGGAGTTTGTGCCTAACTGTTTGTCATCACACCTCAAGACTATCTCCATAAGAGGATTCAAGGGTCTACAATTTGAAATGAAAGTAGTAAAATACATGTTATTGAATGGTTGTCATTTGAATAAGATGACAATTTATACAAGTATGTTAGAGAAGGAAGAGGAGTACTGCAGAGATCTTTTGAGCTTTCAAAGGGTAATGACTTGTCAAGTGGAATTTAGAGAGATGCAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

536

Amino Acids

62.79

Weight (kDa)

6.04

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 73 - 108 1.2e-08 F-box domain
LRR_At5g56370 PF24758 164 - 281 2.3e-08 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 459 - 503 3e-15 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 66
AccB1I GGYRCC 1 cut(s) 66
AccI GTMKAC 1 cut(s) 1441
AciI CCGC 1 cut(s) 140
AclWI GGATC 3 cut(s) 174, 635, 1125
AcoI YGGCCR 1 cut(s) 41
AcsI RAATTY 5 cut(s) 401, 440, 546, 1202, 1589
AcuI CTGAAG 2 cut(s) 848, 1056
AfiI CCNNNNNNNGG 2 cut(s) 653, 1151
AflIII ACRYGT 2 cut(s) 1277, 1470
AloI GAACNNNNNNTCC 2 cut(s) 980, 1012
AluBI AGCT 8 cut(s) 137, 468, 937, 1075, 1174, 1197, 1214, 1560
AluI AGCT 8 cut(s) 137, 468, 937, 1075, 1174, 1197, 1214, 1560
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 817
AlwI GGATC 3 cut(s) 174, 635, 1125
AoxI GGCC 2 cut(s) 41, 362
ApeKI GCWGC 2 cut(s) 4, 1211
ApoI RAATTY 5 cut(s) 401, 440, 546, 1202, 1589
ArsI GACNNNNNNTTYG 2 cut(s) 277, 309
Asp718I GGTACC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 522
AspS9I GGNCC 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 102, 212
BanI GGYRCC 1 cut(s) 66
BanII GRGCYC 1 cut(s) 139
BbsI GAAGAC 2 cut(s) 836, 1041
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 2 cut(s) 16, 1223
BccI CCATC 5 cut(s) 121, 300, 342, 362, 470
BceAI ACGGC 2 cut(s) 263, 497
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 817
BfaI CTAG 3 cut(s) 338, 1208, 1247
BfmI CTRYAG 1 cut(s) 1543
BglII AGATCT 3 cut(s) 1243, 1249, 1549
BisI GCNGC 2 cut(s) 5, 1212
BlsI GCNGC 2 cut(s) 6, 1213
BmcAI AGTACT 2 cut(s) 56, 1541
Bme1390I CCNGG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 363
BmiI GGNNCC 2 cut(s) 68, 898
BmrFI CCNGG 1 cut(s) 146
BmrI ACTGGG 1 cut(s) 722
BmsI GCATC 2 cut(s) 916, 1590
BmuI ACTGGG 1 cut(s) 722
BpiI GAAGAC 2 cut(s) 836, 1041
BpmI CTGGAG 1 cut(s) 35
BpuEI CTTGAG 2 cut(s) 584, 1394
BpuMI CCSGG 1 cut(s) 146
Bsa29I ATCGAT 1 cut(s) 178
BsaAI YACGTR 1 cut(s) 1278
BsaBI GATNNNNATC 2 cut(s) 178, 1248
BsaJI CCNNGG 1 cut(s) 20
BsaWI WCCGGW 3 cut(s) 229, 1334, 1375
Bsc4I CCNNNNNNNGG 2 cut(s) 653, 1151
Bse118I RCCGGY 1 cut(s) 39
Bse1I ACTGG 6 cut(s) 52, 68, 432, 717, 1011, 1087
Bse3DI GCAATG 1 cut(s) 529
Bse8I GATNNNNATC 2 cut(s) 178, 1248
BseCI ATCGAT 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 2 cut(s) 238, 1120
BseJI GATNNNNATC 2 cut(s) 178, 1248
BseLI CCNNNNNNNGG 2 cut(s) 653, 1151
BseMI GCAATG 1 cut(s) 529
BseMII CTCAG 1 cut(s) 1340
BseNI ACTGG 6 cut(s) 52, 68, 432, 717, 1011, 1087
BseRI GAGGAG 1 cut(s) 1550
BseXI GCAGC 2 cut(s) 16, 1223
BseYI CCCAGC 2 cut(s) 468, 1197
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 2 cut(s) 43, 364
BshNI GGYRCC 1 cut(s) 66
BshVI ATCGAT 1 cut(s) 178
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 5 cut(s) 40, 146, 230, 1335, 1376
BslFI GGGAC 1 cut(s) 894
BslI CCNNNNNNNGG 2 cut(s) 653, 1151
BsmAI GTCTC 1 cut(s) 817
BsmFI GGGAC 1 cut(s) 894
BsmI GAATGC 1 cut(s) 1067
BsnI GGCC 2 cut(s) 43, 364
Bsp1286I GDGCHC 1 cut(s) 139
Bsp1407I TGTACA 1 cut(s) 955
Bsp19I CCATGG 1 cut(s) 20
BspACI CCGC 1 cut(s) 140
BspANI GGCC 2 cut(s) 43, 364
BspCNI CTCAG 1 cut(s) 1339
BspDI ATCGAT 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 68, 898
BspMAI CTGCAG 1 cut(s) 1547
BspPI GGATC 3 cut(s) 174, 635, 1125
BspT107I GGYRCC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 529
BsrFI RCCGGY 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 955
BsrI ACTGG 6 cut(s) 52, 68, 432, 717, 1011, 1087
BssAI RCCGGY 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 20
Bst4CI ACNGT 8 cut(s) 154, 292, 615, 691, 768, 779, 1064, 1394
Bst6I CTCTTC 1 cut(s) 1527
BstAUI TGTACA 1 cut(s) 955
BstBAI YACGTR 1 cut(s) 1278
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 3 cut(s) 449, 542, 1326
BstDSI CCRYGG 1 cut(s) 20
BstEII GGTNACC 1 cut(s) 148
BstENI CCTNNNNNAGG 1 cut(s) 651
BstF5I GGATG 2 cut(s) 238, 1120
BstHHI GCGC 1 cut(s) 522
BstMAI GTCTC 1 cut(s) 817
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 134, 1016
BstNSI RCATGY 2 cut(s) 686, 1474
BstPI GGTNACC 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 1543
BstV1I GCAGC 2 cut(s) 16, 1223
BstV2I GAAGAC 2 cut(s) 836, 1041
BstX2I RGATCY 3 cut(s) 1243, 1249, 1549
BstXI CCANNNNNNTGG 1 cut(s) 21
BstYI RGATCY 3 cut(s) 1243, 1249, 1549
Bsu15I ATCGAT 1 cut(s) 178
BsuRI GGCC 2 cut(s) 43, 364
BsuTUI ATCGAT 1 cut(s) 178
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 238, 1120
BtsIMutI CAGTG 2 cut(s) 61, 425
Cac8I GCNNGC 1 cut(s) 466
CfoI GCGC 1 cut(s) 522
Cfr10I RCCGGY 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 363
ClaI ATCGAT 1 cut(s) 178
CviAII CATG 6 cut(s) 21, 92, 488, 683, 884, 1471
DdeI CTNAG 3 cut(s) 449, 542, 1326
EaeI YGGCCR 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 1527
EarI CTCTTC 1 cut(s) 1527
Ecl136II GAGCTC 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 139
Eco32I GATATC 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 137
Eco57I CTGAAG 2 cut(s) 848, 1056
Eco91I GGTNACC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 137
EcoNI CCTNNNNNAGG 1 cut(s) 651
EcoO65I GGTNACC 1 cut(s) 148
EcoRV GATATC 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 6 cut(s) 24, 95, 491, 686, 887, 1474
FaqI GGGAC 1 cut(s) 894
FatI CATG 6 cut(s) 20, 91, 487, 682, 883, 1470
FauNDI CATATG 1 cut(s) 101
FblI GTMKAC 1 cut(s) 1441
Fnu4HI GCNGC 2 cut(s) 5, 1212
FokI GGATG 2 cut(s) 245, 1107
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 2 cut(s) 5, 1212
FspBI CTAG 3 cut(s) 338, 1208, 1247
GlaI GCGC 1 cut(s) 521
GluI GCNGC 2 cut(s) 5, 1212
GsaI CCCAGC 2 cut(s) 472, 1201
GsuI CTGGAG 1 cut(s) 35
HaeIII GGCC 2 cut(s) 43, 364
HapII CCGG 5 cut(s) 40, 146, 230, 1335, 1376
HhaI GCGC 1 cut(s) 522
Hin1II CATG 6 cut(s) 24, 95, 491, 686, 887, 1474
Hin6I GCGC 1 cut(s) 520
HinP1I GCGC 1 cut(s) 520
HindIII AAGCTT 1 cut(s) 935
HinfI GANTC 6 cut(s) 107, 187, 961, 1296, 1369, 1431
HpaII CCGG 5 cut(s) 40, 146, 230, 1335, 1376
HphI GGTGA 2 cut(s) 102, 212
Hpy166II GTNNAC 3 cut(s) 321, 1281, 1442
Hpy188I TCNGA 4 cut(s) 123, 159, 1117, 1329
Hpy8I GTNNAC 3 cut(s) 321, 1281, 1442
HpyAV CCTTC 1 cut(s) 1522
HpyCH4III ACNGT 8 cut(s) 154, 292, 615, 691, 768, 779, 1064, 1394
HpyCH4IV ACGT 3 cut(s) 833, 853, 1277
HpyCH4V TGCA 7 cut(s) 4, 128, 591, 682, 1067, 1545, 1603
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 1016
HpyF3I CTNAG 3 cut(s) 449, 542, 1326
HpySE526I ACGT 3 cut(s) 833, 853, 1277
Hsp92II CATG 6 cut(s) 24, 95, 491, 686, 887, 1474
HspAI GCGC 1 cut(s) 520
KpnI GGTACC 1 cut(s) 70
LmnI GCTCC 2 cut(s) 142, 1224
Lsp1109I GCAGC 2 cut(s) 16, 1223
LweI GCATC 2 cut(s) 916, 1590
MaeI CTAG 3 cut(s) 338, 1208, 1247
MaeII ACGT 3 cut(s) 833, 853, 1277
MaeIII GTNAC 8 cut(s) 32, 148, 225, 245, 685, 691, 779, 854
MfeI CAATTG 1 cut(s) 1166
MflI RGATCY 3 cut(s) 1243, 1249, 1549
MhlI GDGCHC 1 cut(s) 139
MlyI GAGTC 2 cut(s) 101, 1363
MmeI TCCRAC 1 cut(s) 290
MseI TTAA 3 cut(s) 842, 1098, 1268
MslI CAYNNNNRTG 4 cut(s) 19, 492, 888, 918
MspA1I CMGCKG 1 cut(s) 468
MspI CCGG 5 cut(s) 40, 146, 230, 1335, 1376
MspR9I CCNGG 1 cut(s) 146
MunI CAATTG 1 cut(s) 1166
Mva1269I GAATGC 1 cut(s) 1067
MwoI GCNNNNNNNGC 2 cut(s) 134, 1016
NciI CCSGG 1 cut(s) 146
NcoI CCATGG 1 cut(s) 20
NdeI CATATG 1 cut(s) 101
NlaIII CATG 6 cut(s) 24, 95, 491, 686, 887, 1474
NlaIV GGNNCC 2 cut(s) 68, 898
NmuCI GTSAC 3 cut(s) 245, 685, 854
NspI RCATGY 2 cut(s) 686, 1474
PciI ACATGT 1 cut(s) 1470
PctI GAATGC 1 cut(s) 1067
PfeI GAWTC 4 cut(s) 187, 961, 1296, 1431
PkrI GCNGC 2 cut(s) 6, 1213
PleI GAGTC 2 cut(s) 101, 1363
PpsI GAGTC 2 cut(s) 101, 1363
Ppu21I YACGTR 1 cut(s) 1278
PscI ACATGT 1 cut(s) 1470
Psp124BI GAGCTC 1 cut(s) 139
PspEI GGTNACC 1 cut(s) 148
PspFI CCCAGC 2 cut(s) 468, 1197
PspN4I GGNNCC 2 cut(s) 68, 898
PspPI GGNCC 1 cut(s) 363
PstI CTGCAG 1 cut(s) 1547
PsuI RGATCY 3 cut(s) 1243, 1249, 1549
PvuII CAGCTG 1 cut(s) 468
RseI CAYNNNNRTG 4 cut(s) 19, 492, 888, 918
SacI GAGCTC 1 cut(s) 139
SaqAI TTAA 3 cut(s) 842, 1098, 1268
SatI GCNGC 2 cut(s) 5, 1212
Sau96I GGNCC 1 cut(s) 363
ScaI AGTACT 2 cut(s) 56, 1541
SchI GAGTC 2 cut(s) 101, 1363
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 139
SfaNI GCATC 2 cut(s) 916, 1590
SfcI CTRYAG 1 cut(s) 1543
SmiMI CAYNNNNRTG 4 cut(s) 19, 492, 888, 918
SmlI CTYRAG 2 cut(s) 599, 1409
SmoI CTYRAG 2 cut(s) 599, 1409
SsiI CCGC 1 cut(s) 140
SspI AATATT 1 cut(s) 634
SspMI CTAG 3 cut(s) 338, 1208, 1247
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 8 cut(s) 154, 292, 615, 691, 768, 779, 1064, 1394
TaiI ACGT 3 cut(s) 836, 856, 1280
TaqI TCGA 6 cut(s) 133, 178, 345, 744, 924, 1128
TatI WGTACW 3 cut(s) 54, 955, 1539
TfiI GAWTC 4 cut(s) 187, 961, 1296, 1431
Tru1I TTAA 3 cut(s) 842, 1098, 1268
Tru9I TTAA 3 cut(s) 842, 1098, 1268
TscAI CASTG 2 cut(s) 68, 432
TseFI GTSAC 3 cut(s) 245, 685, 854
TseI GCWGC 2 cut(s) 4, 1211
Tsp45I GTSAC 3 cut(s) 245, 685, 854
TspDTI ATGAA 1 cut(s) 1469
TspGWI ACGGA 4 cut(s) 404, 777, 863, 988
TspRI CASTG 2 cut(s) 68, 432
XagI CCTNNNNNAGG 1 cut(s) 651
XapI RAATTY 5 cut(s) 401, 440, 546, 1202, 1589
XbaI TCTAGA 2 cut(s) 337, 1246
XceI RCATGY 2 cut(s) 686, 1474
XcmI CCANNNNNNNNNTGG 2 cut(s) 1079, 1362
XmiI GTMKAC 1 cut(s) 1441
XspI CTAG 3 cut(s) 338, 1208, 1247
ZrmI AGTACT 2 cut(s) 56, 1541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.