Rmu_sc0000814.1_g000032

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000814.1
OG0000079
Physical Location & Seq
Reverse (-)
87482 .. 88995
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000814.1_g000032.1.cds

Sequence Viewer

Length: 579 bp
ctgaatctgtcgccttgggaggtcaccggtgatattcctacatcaggctgtttcccaattctcaagttcctccatgttacagtgtttaatccttccatccgggaaatggagaagcttttgtctcacttccctgtacttgaagagttgactatagatggaactggtgaagatcttgatgactttggtacttgcagtttccaggtctctgcaccgaaactgaagacgctgagaataagtttggaatccctatctgagcctgtcgatattcatgtaaatgccccacagcttgaaagccttgatctccagcggcttggtttaactaattgttttcttgatgggagtgcaaactccctagtcaatgccagtattgctttcagagaaaaatttgaaataaaaggaccgtttgatctttccaactctacattaatggagcttctgaatcaagtctctgatgtcaaatctctatctgtttcggctcattgcttggaggatgttagcgatgttactggcacacttgcaagggatatgtggacaacgcagaaaagcagtcagcttgaaactagctgtggtttgtcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

192

Amino Acids

21.03

Weight (kDa)

4.5

Isoelectric Point (pI)

26.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 307
AcsI RAATTY 1 cut(s) 383
AcuI CTGAAG 1 cut(s) 239
AfaI GTAC 2 cut(s) 135, 187
AfiI CCNNNNNNNGG 2 cut(s) 44, 106
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 4 cut(s) 140, 290, 389, 557
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 5 cut(s) 115, 286, 433, 553, 564
AluI AGCT 5 cut(s) 115, 286, 433, 553, 564
Alw26I GTCTC 3 cut(s) 126, 208, 451
ApoI RAATTY 1 cut(s) 383
AseI ATTAAT 1 cut(s) 425
AsiGI ACCGGT 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 3 cut(s) 16, 41, 176
AvaII GGWCC 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 227
BccI CCATC 3 cut(s) 104, 149, 329
BciT130I CCWGG 1 cut(s) 200
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 3 cut(s) 126, 208, 451
BfaI CTAG 2 cut(s) 353, 561
BfmI CTRYAG 1 cut(s) 150
BglII AGATCT 1 cut(s) 169
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
Bme1390I CCNGG 2 cut(s) 101, 200
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmrFI CCNGG 2 cut(s) 101, 200
BpiI GAAGAC 1 cut(s) 227
BpmI CTGGAG 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 106
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 3 cut(s) 166, 363, 511
Bse3DI GCAATG 1 cut(s) 478
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 2 cut(s) 96, 496
BseLI CCNNNNNNNGG 2 cut(s) 44, 106
BseMI GCAATG 1 cut(s) 478
BseMII CTCAG 2 cut(s) 218, 243
BseNI ACTGG 3 cut(s) 166, 363, 511
BsgI GTGCAG 1 cut(s) 192
BshTI ACCGGT 1 cut(s) 26
BsiSI CCGG 2 cut(s) 27, 100
BslI CCNNNNNNNGG 2 cut(s) 44, 106
BsmAI GTCTC 3 cut(s) 126, 208, 451
Bso31I GGTCTC 1 cut(s) 208
Bsp143I GATC 3 cut(s) 169, 298, 406
BspACI CCGC 1 cut(s) 307
BspCNI CTCAG 2 cut(s) 219, 244
BspTNI GGTCTC 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 478
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 3 cut(s) 166, 363, 511
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 3 cut(s) 169, 298, 406
BssT1I CCWWGG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 82, 402
Bst6I CTCTTC 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 227, 252, 576
BstEII GGTNACC 1 cut(s) 22
BstENI CCTNNNNNAGG 1 cut(s) 42
BstF5I GGATG 2 cut(s) 96, 496
BstKTI GATC 3 cut(s) 172, 301, 409
BstMAI GTCTC 3 cut(s) 126, 208, 451
BstMBI GATC 3 cut(s) 169, 298, 406
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNI CCWGG 1 cut(s) 200
BstPI GGTNACC 1 cut(s) 22
BstSCI CCNGG 2 cut(s) 99, 198
BstSFI CTRYAG 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 169
BstXI CCANNNNNNTGG 1 cut(s) 311
BstYI RGATCY 1 cut(s) 169
BtgZI GCGATG 1 cut(s) 513
BtsCI GGATG 2 cut(s) 96, 496
BtsIMutI CAGTG 1 cut(s) 87
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 398
CseI GACGC 1 cut(s) 232
Csp6I GTAC 2 cut(s) 134, 186
CspAI ACCGGT 1 cut(s) 26
CviAII CATG 2 cut(s) 74, 269
CviQI GTAC 2 cut(s) 134, 186
DdeI CTNAG 3 cut(s) 227, 252, 576
DpnI GATC 3 cut(s) 171, 300, 408
DpnII GATC 3 cut(s) 169, 298, 406
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 14
Eco31I GGTCTC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 239
Eco91I GGTNACC 1 cut(s) 22
EcoNI CCTNNNNNAGG 1 cut(s) 42
EcoO65I GGTNACC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 14
FaeI CATG 2 cut(s) 77, 272
FaiI YATR 4 cut(s) 75, 152, 270, 527
FatI CATG 2 cut(s) 73, 268
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 2 cut(s) 83, 503
Fsp4HI GCNGC 1 cut(s) 308
FspBI CTAG 2 cut(s) 353, 561
GluI GCNGC 1 cut(s) 308
GsuI CTGGAG 1 cut(s) 287
HapII CCGG 2 cut(s) 27, 100
HgaI GACGC 1 cut(s) 232
Hin1II CATG 2 cut(s) 77, 272
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 3 cut(s) 4, 242, 439
HpaII CCGG 2 cut(s) 27, 100
HphI GGTGA 3 cut(s) 16, 41, 176
Hpy166II GTNNAC 2 cut(s) 147, 531
Hpy188I TCNGA 4 cut(s) 253, 377, 438, 451
Hpy188III TCNNGA 2 cut(s) 173, 332
Hpy8I GTNNAC 2 cut(s) 147, 531
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 2 cut(s) 82, 402
HpyCH4V TGCA 4 cut(s) 192, 209, 344, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 3 cut(s) 227, 252, 576
Hsp92II CATG 2 cut(s) 77, 272
Kzo9I GATC 3 cut(s) 169, 298, 406
LmnI GCTCC 1 cut(s) 430
MaeI CTAG 2 cut(s) 353, 561
MaeIII GTNAC 3 cut(s) 22, 76, 502
MalI GATC 3 cut(s) 171, 300, 408
MboI GATC 3 cut(s) 169, 298, 406
MboII GAAGA 3 cut(s) 152, 179, 232
MflI RGATCY 1 cut(s) 169
MluCI AATT 3 cut(s) 57, 322, 383
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 3 cut(s) 13, 80, 481
MseI TTAA 3 cut(s) 87, 317, 425
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 2 cut(s) 27, 100
MspR9I CCNGG 2 cut(s) 101, 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 368
NciI CCSGG 1 cut(s) 101
NdeII GATC 3 cut(s) 169, 298, 406
NlaIII CATG 2 cut(s) 77, 272
NmuCI GTSAC 1 cut(s) 22
PfeI GAWTC 3 cut(s) 4, 242, 439
PfoI TCCNGGA 1 cut(s) 99
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 1 cut(s) 309
PshBI ATTAAT 1 cut(s) 425
Psp6I CCWGG 1 cut(s) 198
PspEI GGTNACC 1 cut(s) 22
PspGI CCWGG 1 cut(s) 198
PspPI GGNCC 1 cut(s) 398
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 2 cut(s) 135, 187
RsaNI GTAC 2 cut(s) 134, 186
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 3 cut(s) 87, 317, 425
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 3 cut(s) 169, 298, 406
Sau96I GGNCC 1 cut(s) 398
ScrFI CCNGG 2 cut(s) 101, 200
SetI ASST 7 cut(s) 24, 117, 204, 288, 435, 555, 566
SfcI CTRYAG 1 cut(s) 150
SgrAI CRCCGGYG 1 cut(s) 26
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 3 cut(s) 57, 322, 383
SsiI CCGC 1 cut(s) 307
SspMI CTAG 2 cut(s) 353, 561
StyD4I CCNGG 2 cut(s) 99, 198
StyI CCWWGG 1 cut(s) 14
TaaI ACNGT 2 cut(s) 82, 402
TaqI TCGA 1 cut(s) 261
TasI AATT 3 cut(s) 57, 322, 383
TatI WGTACW 1 cut(s) 133
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 3 cut(s) 4, 242, 439
Tru1I TTAA 3 cut(s) 87, 317, 425
Tru9I TTAA 3 cut(s) 87, 317, 425
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 257
TspRI CASTG 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 398
VspI ATTAAT 1 cut(s) 425
XagI CCTNNNNNAGG 1 cut(s) 42
XapI RAATTY 1 cut(s) 383
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XspI CTAG 2 cut(s) 353, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.