pycom11g24360

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
27280645 .. 27281193
549 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g24360.1

Sequence Viewer

Length: 441 bp
ATGAAGGTGCATGATCTTCCTGCTTTTAATAATGTGAGCCAATTGGAACTTACTCTTTATGATGGCGACTACTGCGAGTTGGTAATTGAGTTGCTCAAGAGATCACCTAAACTGGAATATCTTGCCTTAGGAGATCAATATTTCAGCTGTAGAGAACTATTCCCAGAGCACTCACAAGATCGATGGAATCCACCAGAGCTTGTGCCTGATTGTTTGTTGTCACACCTCAAGACTATCTCCTTGAGAGGATTTCAAGGAAGCCAGGACGAGATGGAAGTAGCAAAGTATTTGTTAAAGAACAGTGACGTTTTGAAGAAGCTTACTATTTATCCCGGGATGCATATTCCTAGAGAGCAGTGGTATGAACAAGAGAAGCTGGTATACAAGGAACTTTGTGCGTTTAAATGGGGTTCGAAGACTTGTCGAGTTGAATTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

147

Amino Acids

17.22

Weight (kDa)

5.59

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 65 - 109 7.3e-19 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 381
AcsI RAATTY 1 cut(s) 431
AgsI TTSAA 3 cut(s) 254, 313, 431
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 4 cut(s) 147, 199, 319, 376
AluI AGCT 4 cut(s) 147, 199, 319, 376
Alw21I GWGCWC 1 cut(s) 171
Ama87I CYCGRG 1 cut(s) 332
ApoI RAATTY 1 cut(s) 431
AsuC2I CCSGG 2 cut(s) 333, 334
AsuHPI GGTGA 1 cut(s) 96
AsuII TTCGAA 1 cut(s) 413
AvaI CYCGRG 1 cut(s) 332
AxyI CCTNAGG 1 cut(s) 127
BarI GAAGNNNNNNTAC 2 cut(s) 365, 397
BbsI GAAGAC 1 cut(s) 422
Bbv12I GWGCWC 1 cut(s) 171
BccI CCATC 3 cut(s) 56, 177, 265
BciT130I CCWGG 1 cut(s) 263
BcnI CCSGG 2 cut(s) 333, 334
BfaI CTAG 2 cut(s) 348, 439
BfmI CTRYAG 1 cut(s) 148
Bme1390I CCNGG 3 cut(s) 263, 333, 334
BmeT110I CYCGRG 1 cut(s) 332
BmrFI CCNGG 3 cut(s) 263, 333, 334
BmsI GCATC 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 422
Bpu14I TTCGAA 1 cut(s) 413
BpuEI CTTGAG 3 cut(s) 80, 212, 262
BpuMI CCSGG 2 cut(s) 333, 334
Bsa29I ATCGAT 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 332
Bse1I ACTGG 1 cut(s) 117
Bse21I CCTNAGG 1 cut(s) 127
BseBI CCWGG 1 cut(s) 263
BseCI ATCGAT 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 332
BseGI GGATG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 117
BshVI ATCGAT 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 1 cut(s) 333
BsoBI CYCGRG 1 cut(s) 332
Bsp119I TTCGAA 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 4 cut(s) 13, 101, 133, 178
BspDI ATCGAT 1 cut(s) 181
BspT104I TTCGAA 1 cut(s) 413
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 332
BssMI GATC 4 cut(s) 13, 101, 133, 178
BssNAI GTATAC 1 cut(s) 382
Bst1107I GTATAC 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 302
BstBI TTCGAA 1 cut(s) 413
BstDEI CTNAG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 342
BstKTI GATC 4 cut(s) 16, 104, 136, 181
BstMBI GATC 4 cut(s) 13, 101, 133, 178
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 3 cut(s) 261, 331, 332
BstSFI CTRYAG 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 422
BstZ17I GTATAC 1 cut(s) 382
Bsu15I ATCGAT 1 cut(s) 181
Bsu36I CCTNAGG 1 cut(s) 127
BsuTUI ATCGAT 1 cut(s) 181
BtsCI GGATG 1 cut(s) 342
BtsI GCAGTG 1 cut(s) 362
BtsIMutI CAGTG 2 cut(s) 307, 362
Cfr9I CCCGGG 1 cut(s) 332
ClaI ATCGAT 1 cut(s) 181
CviAII CATG 1 cut(s) 11
CviJI RGCY 6 cut(s) 39, 147, 199, 261, 319, 376
CviKI_1 RGCY 6 cut(s) 39, 147, 199, 261, 319, 376
DdeI CTNAG 1 cut(s) 127
DpnI GATC 4 cut(s) 15, 103, 135, 180
DpnII GATC 4 cut(s) 13, 101, 133, 178
DraI TTTAAA 1 cut(s) 403
Eco81I CCTNAGG 1 cut(s) 127
Eco88I CYCGRG 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 261
EcoT22I ATGCAT 1 cut(s) 342
FaeI CATG 1 cut(s) 14
FaiI YATR 5 cut(s) 12, 60, 342, 363, 382
FatI CATG 1 cut(s) 10
FblI GTMKAC 1 cut(s) 381
FokI GGATG 1 cut(s) 349
FspBI CTAG 2 cut(s) 348, 439
HapII CCGG 1 cut(s) 333
Hin1II CATG 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 1 cut(s) 187
HpaII CCGG 1 cut(s) 333
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 1 cut(s) 382
Hpy188III TCNNGA 2 cut(s) 97, 229
Hpy8I GTNNAC 1 cut(s) 382
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 2 cut(s) 10, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 127
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 1 cut(s) 14
Kzo9I GATC 4 cut(s) 13, 101, 133, 178
LpnPI CCDG 9 cut(s) 33, 98, 177, 207, 219, 248, 275, 346, 362
LweI GCATC 1 cut(s) 327
MaeI CTAG 2 cut(s) 348, 439
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 219, 302
MalI GATC 4 cut(s) 15, 103, 135, 180
MboI GATC 4 cut(s) 13, 101, 133, 178
MboII GAAGA 3 cut(s) 8, 325, 427
MfeI CAATTG 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 3 cut(s) 41, 84, 431
MnlI CCTC 2 cut(s) 236, 239
Mph1103I ATGCAT 1 cut(s) 342
MseI TTAA 3 cut(s) 27, 293, 402
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 3 cut(s) 263, 333, 334
MunI CAATTG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 72
NciI CCSGG 2 cut(s) 333, 334
NdeII GATC 4 cut(s) 13, 101, 133, 178
NlaIII CATG 1 cut(s) 14
NmuCI GTSAC 2 cut(s) 219, 302
NsiI ATGCAT 1 cut(s) 342
NspV TTCGAA 1 cut(s) 413
PfeI GAWTC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PvuII CAGCTG 1 cut(s) 147
SaqAI TTAA 3 cut(s) 27, 293, 402
Sau3AI GATC 4 cut(s) 13, 101, 133, 178
ScrFI CCNGG 3 cut(s) 263, 333, 334
SduI GDGCHC 1 cut(s) 171
SetI ASST 8 cut(s) 9, 109, 149, 201, 228, 309, 321, 378
SfaNI GCATC 1 cut(s) 327
SfcI CTRYAG 1 cut(s) 148
SfuI TTCGAA 1 cut(s) 413
SmaI CCCGGG 1 cut(s) 334
SmlI CTYRAG 3 cut(s) 95, 227, 241
SmoI CTYRAG 3 cut(s) 95, 227, 241
Sse9I AATT 3 cut(s) 41, 84, 431
SspI AATATT 1 cut(s) 140
SspMI CTAG 2 cut(s) 348, 439
StyD4I CCNGG 3 cut(s) 261, 331, 332
TaaI ACNGT 1 cut(s) 302
TaiI ACGT 1 cut(s) 309
TaqI TCGA 3 cut(s) 181, 413, 424
TasI AATT 3 cut(s) 41, 84, 431
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 3 cut(s) 27, 293, 402
Tru9I TTAA 3 cut(s) 27, 293, 402
TscAI CASTG 2 cut(s) 307, 362
TseFI GTSAC 2 cut(s) 219, 302
Tsp45I GTSAC 2 cut(s) 219, 302
TspDTI ATGAA 2 cut(s) 17, 378
TspMI CCCGGG 1 cut(s) 332
TspRI CASTG 2 cut(s) 307, 362
XapI RAATTY 1 cut(s) 431
XmaI CCCGGG 1 cut(s) 332
XmiI GTMKAC 1 cut(s) 381
XspI CTAG 2 cut(s) 348, 439
Zsp2I ATGCAT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.