Rroxscaffold_1G00020580

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000079
Physical Location & Seq
Reverse (-)
24971373 .. 24973942
2570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00020580.1

Sequence Viewer

Length: 1374 bp
ATGAGTTCGCTTATGCCGAAGCACCAAACAAGAAACAAAGATAGGATCAGTGCATTACCAGATGCACTTATTTGTCACATACGTTCCTCACTTCGTACCGTCGAGGTTTTAGAGACTATGGTTTTGTCTAAAAGATGGAAGAACATGTGGGCTTCCGTTTCCAATTTAGACTTCGACTTCAAAAGGGATTTTGGAAGAGTAGAGGATATTCAAGTTTTTATAATGTTTGTGAGTCGTGTACTCTACATGCGTGACTCATCAGACATACAAAAGTTTCGTCTTGTAATTTCCTCCATTGGGTATTTTCGTGTTTTTGACGATTGGATGTACACTGCAGTTAGGCGTAATGTTGTTGAGCTTGATCTTCATATGTTGATTGGATATTCCCGGTATGTTGAGTTGCCTGAGTGCATTTTTATGTGCAAAACCCTAAGGGTTTTGAAACTGAATCTGGGGCGGTATGTCCACGCCGAACCTCCCACATCTGGCTCTTGTTTCCCAAGTCTTAAGTTCCTCCATGTTACGGTTTTTAATCCTGTCATGACAACAATGCAGAAGCTTTTCTCTCGCTGCCCTGTACTTGAAGATTTGACAATAGATGGAACCATTGATGTGTATTTGTTTGGGATCGATGGCAATTTCAAGATCTCTGCTCCAGAACTGAAGATGTTGAGAATAAGTTTGGAAATTAATCAGGATCCAATCGATGTTTACATCAATTCCCCAAAGCTTGAGAACATTGATCTAAAGAGGGTTGGTTTGAATAATTTTTTTCTTGTGGGGAGTGCAAAATCCCTGGTCAATGCCAATATTGCGTTCAGAGAACGGTCTGAATTTGAAGTGGAAGAACAGCAGGTACTATCCAACCGTGCAATGGCGCTTCTGGATCAAGTTTCTAATGTTAAATCTCTATCTCTTTCGGCTCATTCCATGGAGAATTGGCATATCCCGGAATTTGGTAATGTCAACCAATTGAGACTATTTTTTGGGGATTGCAGTTGCTGGGAATTGCTACCTGGGTTTCTAAAAAATGCACCTAATCTCGAAGATTTTTTCTTAGAAGATAGAACTGAAGGTTGCGAGGAATTTTCAGAGCTGCACTGGCGTCTACCGGAGGATATGCCTATTTGTTTCTCTTCACATCTGAAGACTATCTCCTTGAAGGGATTCAAGGGAAGGCGGGTTGAGATGGAAATGGTAAAGTTTCTGTTGAACAATGGTCATCTGTTGAAAAAAATGACTATTGTTACAGGCATTTGTCTTTCATATTCGAAACAGGAGGAGTTATACAAGGAGTTTATGATGTTCCACAGGGCAACAACTTGTCATATCGAGTTTGTATATGCAGATACAAGTTTAGGTTCTACTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

457

Amino Acids

53.02

Weight (kDa)

6.65

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 88 - 417 4.4e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 106 - 310 5.5e-13 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 371 - 415 1.9e-14 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
Acc36I ACCTGC 1 cut(s) 844
AccI GTMKAC 1 cut(s) 1108
AciI CCGC 2 cut(s) 457, 1180
AclWI GGATC 5 cut(s) 53, 635, 692, 705, 894
AcsI RAATTY 3 cut(s) 833, 953, 1085
AcuI CTGAAG 3 cut(s) 683, 1092, 1166
AcyI GRCGYC 1 cut(s) 1105
AfaI GTAC 5 cut(s) 97, 240, 329, 579, 858
AfiI CCNNNNNNNGG 5 cut(s) 297, 485, 523, 874, 956
AflII CTTAAG 1 cut(s) 506
AflIII ACRYGT 1 cut(s) 144
AjnI CCWGG 2 cut(s) 795, 1015
AjuI GAANNNNNNNTTGG 4 cut(s) 155, 187, 800, 832
AluBI AGCT 4 cut(s) 358, 559, 730, 1096
AluI AGCT 4 cut(s) 358, 559, 730, 1096
Alw26I GTCTC 2 cut(s) 107, 970
AlwI GGATC 5 cut(s) 53, 635, 692, 705, 894
AlwNI CAGNNNCTG 1 cut(s) 1002
ApeKI GCWGC 2 cut(s) 570, 1096
ApoI RAATTY 3 cut(s) 833, 953, 1085
ArsI GACNNNNNNTTYG 4 cut(s) 106, 138, 262, 294
AseI ATTAAT 1 cut(s) 690
Asp700I GAANNNNTTC 2 cut(s) 560, 1166
AspLEI GCGC 1 cut(s) 880
AsuC2I CCSGG 2 cut(s) 388, 950
AsuII TTCGAA 1 cut(s) 1271
AxyI CCTNAGG 1 cut(s) 431
BamHI GGATCC 1 cut(s) 697
BbsI GAAGAC 1 cut(s) 1154
BbvI GCAGC 2 cut(s) 557, 1083
BccI CCATC 4 cut(s) 129, 593, 626, 1183
BciT130I CCWGG 2 cut(s) 797, 1017
BcnI CCSGG 2 cut(s) 388, 950
BcoDI GTCTC 2 cut(s) 107, 970
BfaI CTAG 1 cut(s) 1368
BfmI CTRYAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 881
BfrI CTTAAG 1 cut(s) 506
BfuAI ACCTGC 1 cut(s) 844
BglII AGATCT 1 cut(s) 645
BisI GCNGC 2 cut(s) 571, 1097
BlsI GCNGC 2 cut(s) 572, 1098
Bme1390I CCNGG 4 cut(s) 388, 797, 950, 1017
BmiI GGNNCC 2 cut(s) 604, 699
BmrFI CCNGG 4 cut(s) 388, 797, 950, 1017
BmsI GCATC 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 1154
BpmI CTGGAG 1 cut(s) 639
Bpu14I TTCGAA 1 cut(s) 1271
BpuEI CTTGAG 1 cut(s) 752
BpuMI CCSGG 2 cut(s) 388, 950
Bsa29I ATCGAT 2 cut(s) 630, 705
BsaHI GRCGYC 1 cut(s) 1105
BsaJI CCNNGG 3 cut(s) 795, 930, 1016
BsaWI WCCGGW 1 cut(s) 1111
Bsc4I CCNNNNNNNGG 5 cut(s) 297, 485, 523, 874, 956
Bse1I ACTGG 1 cut(s) 1106
Bse21I CCTNAGG 1 cut(s) 431
Bse3DI GCAATG 1 cut(s) 879
BseBI CCWGG 2 cut(s) 797, 1017
BseCI ATCGAT 2 cut(s) 630, 705
BseDI CCNNGG 3 cut(s) 795, 930, 1016
BseGI GGATG 1 cut(s) 330
BseLI CCNNNNNNNGG 5 cut(s) 297, 485, 523, 874, 956
BseMI GCAATG 1 cut(s) 879
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 1106
BseRI GAGGAG 1 cut(s) 1295
BseXI GCAGC 2 cut(s) 557, 1083
BseYI CCCAGC 1 cut(s) 1002
BsgI GTGCAG 1 cut(s) 1082
BshVI ATCGAT 2 cut(s) 630, 705
BsiSI CCGG 3 cut(s) 388, 950, 1112
BslI CCNNNNNNNGG 5 cut(s) 297, 485, 523, 874, 956
BsmAI GTCTC 2 cut(s) 107, 970
Bsp119I TTCGAA 1 cut(s) 1271
Bsp1407I TGTACA 1 cut(s) 327
Bsp143I GATC 7 cut(s) 45, 361, 627, 645, 697, 742, 886
Bsp19I CCATGG 1 cut(s) 930
BspACI CCGC 2 cut(s) 457, 1180
BspCNI CTCAG 1 cut(s) 397
BspDI ATCGAT 2 cut(s) 630, 705
BspHI TCATGA 1 cut(s) 540
BspLI GGNNCC 2 cut(s) 604, 699
BspMAI CTGCAG 1 cut(s) 337
BspMI ACCTGC 1 cut(s) 844
BspPI GGATC 5 cut(s) 53, 635, 692, 705, 894
BspT104I TTCGAA 1 cut(s) 1271
BspTI CTTAAG 1 cut(s) 506
BsrDI GCAATG 1 cut(s) 879
BsrGI TGTACA 1 cut(s) 327
BsrI ACTGG 1 cut(s) 1106
BssECI CCNNGG 3 cut(s) 795, 930, 1016
BssMI GATC 7 cut(s) 45, 361, 627, 645, 697, 742, 886
BssNI GRCGYC 1 cut(s) 1105
BssT1I CCWWGG 1 cut(s) 930
Bst2UI CCWGG 2 cut(s) 797, 1017
Bst4CI ACNGT 4 cut(s) 100, 526, 828, 869
Bst6I CTCTTC 2 cut(s) 190, 1141
BstACI GRCGYC 1 cut(s) 1105
BstAFI CTTAAG 1 cut(s) 506
BstAUI TGTACA 1 cut(s) 327
BstBI TTCGAA 1 cut(s) 1271
BstDEI CTNAG 3 cut(s) 405, 431, 1057
BstDSI CCRYGG 1 cut(s) 930
BstF5I GGATG 1 cut(s) 330
BstH2I RGCGCY 1 cut(s) 881
BstHHI GCGC 1 cut(s) 880
BstKTI GATC 7 cut(s) 48, 364, 630, 648, 700, 745, 889
BstMAI GTCTC 2 cut(s) 107, 970
BstMBI GATC 7 cut(s) 45, 361, 627, 645, 697, 742, 886
BstMWI GCNNNNNNNGC 2 cut(s) 812, 1102
BstNI CCWGG 2 cut(s) 797, 1017
BstNSI RCATGY 2 cut(s) 148, 250
BstSCI CCNGG 4 cut(s) 386, 795, 948, 1015
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 557, 1083
BstV2I GAAGAC 1 cut(s) 1154
BstX2I RGATCY 2 cut(s) 645, 697
BstYI RGATCY 2 cut(s) 645, 697
Bsu15I ATCGAT 2 cut(s) 630, 705
Bsu36I CCTNAGG 1 cut(s) 431
BsuTUI ATCGAT 2 cut(s) 630, 705
BtgI CCRYGG 1 cut(s) 930
BtsCI GGATG 1 cut(s) 330
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 3 cut(s) 55, 330, 1099
BveI ACCTGC 1 cut(s) 844
CaiI CAGNNNCTG 1 cut(s) 1002
CciI TCATGA 1 cut(s) 540
CfoI GCGC 1 cut(s) 880
ClaI ATCGAT 2 cut(s) 630, 705
CseI GACGC 1 cut(s) 1094
Csp6I GTAC 5 cut(s) 96, 239, 328, 578, 857
CviAII CATG 5 cut(s) 145, 247, 518, 541, 931
CviJI RGCY 7 cut(s) 152, 358, 489, 559, 730, 923, 1096
CviKI_1 RGCY 7 cut(s) 152, 358, 489, 559, 730, 923, 1096
CviQI GTAC 5 cut(s) 96, 239, 328, 578, 857
DdeI CTNAG 3 cut(s) 405, 431, 1057
DpnI GATC 7 cut(s) 47, 363, 629, 647, 699, 744, 888
DpnII GATC 7 cut(s) 45, 361, 627, 645, 697, 742, 886
Eam1104I CTCTTC 2 cut(s) 190, 1141
EarI CTCTTC 2 cut(s) 190, 1141
Eco130I CCWWGG 1 cut(s) 930
Eco57I CTGAAG 3 cut(s) 683, 1092, 1166
Eco81I CCTNAGG 1 cut(s) 431
EcoRII CCWGG 2 cut(s) 795, 1015
EcoT14I CCWWGG 1 cut(s) 930
ErhI CCWWGG 1 cut(s) 930
FaeI CATG 5 cut(s) 148, 250, 521, 544, 934
FatI CATG 5 cut(s) 144, 246, 517, 540, 930
FauI CCCGC 1 cut(s) 1173
FauNDI CATATG 1 cut(s) 369
FblI GTMKAC 1 cut(s) 1108
Fnu4HI GCNGC 2 cut(s) 571, 1097
FokI GGATG 1 cut(s) 337
Fsp4HI GCNGC 2 cut(s) 571, 1097
FspBI CTAG 1 cut(s) 1368
GlaI GCGC 1 cut(s) 879
GluI GCNGC 2 cut(s) 571, 1097
GsaI CCCAGC 1 cut(s) 1006
GsuI CTGGAG 1 cut(s) 639
HaeII RGCGCY 1 cut(s) 881
HapII CCGG 3 cut(s) 388, 950, 1112
HgaI GACGC 1 cut(s) 1094
HhaI GCGC 1 cut(s) 880
Hin1I GRCGYC 1 cut(s) 1105
Hin1II CATG 5 cut(s) 148, 250, 521, 544, 934
Hin6I GCGC 1 cut(s) 878
HinP1I GCGC 1 cut(s) 878
HincII GTYRAC 1 cut(s) 967
HindII GTYRAC 1 cut(s) 967
HindIII AAGCTT 2 cut(s) 557, 728
HinfI GANTC 4 cut(s) 232, 254, 448, 1167
HpaII CCGG 3 cut(s) 388, 950, 1112
Hpy166II GTNNAC 6 cut(s) 239, 330, 466, 712, 967, 1109
Hpy188I TCNGA 5 cut(s) 262, 821, 832, 1093, 1146
Hpy188III TCNNGA 6 cut(s) 541, 643, 656, 695, 884, 1043
Hpy8I GTNNAC 6 cut(s) 239, 330, 466, 712, 967, 1109
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 3 cut(s) 1067, 1156, 1170
HpyCH4III ACNGT 4 cut(s) 100, 526, 828, 869
HpyCH4IV ACGT 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 2 cut(s) 812, 1102
HpyF3I CTNAG 3 cut(s) 405, 431, 1057
HpySE526I ACGT 1 cut(s) 82
Hsp92I GRCGYC 1 cut(s) 1105
Hsp92II CATG 5 cut(s) 148, 250, 521, 544, 934
HspAI GCGC 1 cut(s) 878
Kzo9I GATC 7 cut(s) 45, 361, 627, 645, 697, 742, 886
LmnI GCTCC 1 cut(s) 658
Lsp1109I GCAGC 2 cut(s) 557, 1083
LweI GCATC 1 cut(s) 52
MaeI CTAG 1 cut(s) 1368
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 4 cut(s) 74, 251, 520, 1246
MalI GATC 7 cut(s) 47, 363, 629, 647, 699, 744, 888
MboI GATC 7 cut(s) 45, 361, 627, 645, 697, 742, 886
MfeI CAATTG 1 cut(s) 971
MflI RGATCY 2 cut(s) 645, 697
MlyI GAGTC 2 cut(s) 241, 248
MmeI TCCRAC 1 cut(s) 888
MroXI GAANNNNTTC 2 cut(s) 560, 1166
MseI TTAA 4 cut(s) 507, 531, 690, 903
MslI CAYNNNNRTG 2 cut(s) 416, 611
MspCI CTTAAG 1 cut(s) 506
MspI CCGG 3 cut(s) 388, 950, 1112
MspR9I CCNGG 4 cut(s) 388, 797, 950, 1017
MunI CAATTG 1 cut(s) 971
MvaI CCWGG 2 cut(s) 797, 1017
MwoI GCNNNNNNNGC 2 cut(s) 812, 1102
NciI CCSGG 2 cut(s) 388, 950
NcoI CCATGG 1 cut(s) 930
NdeI CATATG 1 cut(s) 369
NdeII GATC 7 cut(s) 45, 361, 627, 645, 697, 742, 886
NlaIII CATG 5 cut(s) 148, 250, 521, 544, 934
NlaIV GGNNCC 2 cut(s) 604, 699
NmuCI GTSAC 2 cut(s) 74, 251
NspI RCATGY 2 cut(s) 148, 250
NspV TTCGAA 1 cut(s) 1271
PagI TCATGA 1 cut(s) 540
PciI ACATGT 1 cut(s) 144
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PdmI GAANNNNTTC 2 cut(s) 560, 1166
PfeI GAWTC 2 cut(s) 448, 1167
PfoI TCCNGGA 1 cut(s) 948
PkrI GCNGC 2 cut(s) 572, 1098
PleI GAGTC 2 cut(s) 240, 248
PpsI GAGTC 2 cut(s) 240, 248
PscI ACATGT 1 cut(s) 144
PshBI ATTAAT 1 cut(s) 690
PsiI TTATAA 1 cut(s) 221
Psp6I CCWGG 2 cut(s) 795, 1015
PspFI CCCAGC 1 cut(s) 1002
PspGI CCWGG 2 cut(s) 795, 1015
PspN4I GGNNCC 2 cut(s) 604, 699
PsrI GAACNNNNNNTAC 2 cut(s) 840, 872
PstI CTGCAG 1 cut(s) 337
PstNI CAGNNNCTG 1 cut(s) 1002
PsuI RGATCY 2 cut(s) 645, 697
RsaI GTAC 5 cut(s) 97, 240, 329, 579, 858
RsaNI GTAC 5 cut(s) 96, 239, 328, 578, 857
RseI CAYNNNNRTG 2 cut(s) 416, 611
SaqAI TTAA 4 cut(s) 507, 531, 690, 903
SatI GCNGC 2 cut(s) 571, 1097
Sau3AI GATC 7 cut(s) 45, 361, 627, 645, 697, 742, 886
SchI GAGTC 2 cut(s) 241, 248
ScrFI CCNGG 4 cut(s) 388, 797, 950, 1017
SfaNI GCATC 1 cut(s) 52
SfcI CTRYAG 1 cut(s) 333
SfuI TTCGAA 1 cut(s) 1271
SmiMI CAYNNNNRTG 2 cut(s) 416, 611
SmlI CTYRAG 2 cut(s) 506, 731
SmoI CTYRAG 2 cut(s) 506, 731
SsiI CCGC 2 cut(s) 457, 1180
SspI AATATT 1 cut(s) 811
SspMI CTAG 1 cut(s) 1368
StyD4I CCNGG 4 cut(s) 386, 795, 948, 1015
StyI CCWWGG 1 cut(s) 930
TaaI ACNGT 4 cut(s) 100, 526, 828, 869
TaiI ACGT 1 cut(s) 85
TaqI TCGA 7 cut(s) 102, 174, 630, 705, 1044, 1271, 1332
TatI WGTACW 3 cut(s) 238, 327, 577
TfiI GAWTC 2 cut(s) 448, 1167
Tru1I TTAA 4 cut(s) 507, 531, 690, 903
Tru9I TTAA 4 cut(s) 507, 531, 690, 903
TscAI CASTG 3 cut(s) 55, 337, 1106
TseFI GTSAC 2 cut(s) 74, 251
TseI GCWGC 2 cut(s) 570, 1096
Tsp45I GTSAC 2 cut(s) 74, 251
TspDTI ATGAA 2 cut(s) 356, 1254
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 3 cut(s) 55, 337, 1106
Vha464I CTTAAG 1 cut(s) 506
VspI ATTAAT 1 cut(s) 690
XapI RAATTY 3 cut(s) 833, 953, 1085
XceI RCATGY 2 cut(s) 148, 250
XcmI CCANNNNNNNNNTGG 1 cut(s) 871
XmiI GTMKAC 1 cut(s) 1108
XmnI GAANNNNTTC 2 cut(s) 560, 1166
XspI CTAG 1 cut(s) 1368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.