Rh5AG198700

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000079
Physical Location & Seq
Reverse (-)
23415802 .. 23417678
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG198700.1

Sequence Viewer

Length: 1404 bp
ATGGGTTCTGTATCGAAGCATCAAGCAATAGTTAAAGATAGGATCAGTGCATTACCAGATGCAGTTCTGGGTCACATACTTTCGTTTCTTCGAACGAAATATGCTGTCAGGACCACCATTTTGTCTAAAAGATGGAACAAATTGTGGACTTATGTTCCAAGTCTGGACTTCAAAGACGAACAAGATTTCCATACTTTCCGGACAGATGGCTATGGCTCAGAACTTTTTACGAATTTTGTTGATCGTGTACTTTTATTTCGCCAATCATCAGACATCCGAAAGTTCCGTCTTTCACTTCGCCACTGTGATGCTTTTTCTCGTATTGATGGCTGGATATGCACTGCCATTAGGCGTAATGTTGTTGAACTTGATTTTTTTCTTTGTGTTGATGATGACATTACTTTTGAGTTGCCTCAATGTGTTTTCATGTGCAAAACACTGGAGGTCTTGAAGCTGGCATCAAATTGTCTTACCTGTGCCCCTCCTCCATCCGGGTGTTTCTCAAGTCTCAAGTTTCTTCGTGTTTCAGTTTATTATCCTGTGAGTGATTGGGTGGCAAACATTTTCTCTCACTGCCCTTTACTTGAGGGATTGATCATAGATGGAAATGTTGGACTTGAAAGAGTTTTGAATTTCAACATATCCGCGCGCAATCTGAAGACATTGAAAATAGATTTGTACATTGATGGCAATCCAGGTGATCCAGCATACAATCTTTTCATCGATGCCCCAAAGCTCGAAAACCTTGATGTCAAGCTGGATAAGTTATCGAACTATTATATAAAGGATGCAAAATCCCTAATTAAGGCTGATATTGATCTTGAAGCCTGTGGTGCAGAACAACAGCCTGCCTTTGCCAACCGTGTAACTGCGCTTCTGCCACTTATTTCAAGTGTTAAATATCTCTCTCTCTCAGCTCATTGTATGGAGTATTTCAAGAAAGAGGAAGGAGATTTTGATATGAATCAGTTGGCTCTTCATGAATGCTATTGCTGGGAATGGCTTCCGGTGTTCCTTGAAGCATTGCATAATCTGGAAGCCCTTGCCTTACAAGATTTACGGTGCACATGTGCTGAAGTAGGGTTACCAAAGAAGGAATCACCTGATATGGAAGATGGAGTTTCAGAAGATAAAAACGAATGGAATGAAAAATATTCACAGCATCAATGGAATCCACCAGAATTTGTTCCTGTTTGTTTGTCATCGCACCTCAAGAGTGTCTTCATAAGAGGATTCAAGGGGCGGCCGGTTGAGATAGAAGTTGCCGAGTATTTGTTAAAGAATGGTAAAGTTTTGAATAAGCTGGCAATTCATACGTGTTCTCATACAAAACCAGAGGCGTTGCATAAGGAATTCGTAACATTCCAAAGGGGTTCCGCGACTTGTCAAGTTGAATTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

467

Amino Acids

53.26

Weight (kDa)

5.94

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 53 3.2e-06 F-box domain
LRR_At5g56370 PF24758 108 - 249 2.4e-10 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 393 - 437 4.5e-15 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 647, 649, 1379
AccIII TCCGGA 1 cut(s) 198
AciI CCGC 3 cut(s) 645, 1243, 1377
AclWI GGATC 2 cut(s) 50, 695
AcoI YGGCCR 1 cut(s) 1244
AcsI RAATTY 4 cut(s) 232, 631, 1181, 1352
AcuI CTGAAG 2 cut(s) 677, 1095
AfaI GTAC 2 cut(s) 249, 680
AfiI CCNNNNNNNGG 2 cut(s) 491, 805
AflIII ACRYGT 2 cut(s) 1067, 1316
AjnI CCWGG 1 cut(s) 694
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 5 cut(s) 454, 736, 757, 917, 1303
AluI AGCT 5 cut(s) 454, 736, 757, 917, 1303
Alw21I GWGCWC 1 cut(s) 1067
Alw26I GTCTC 1 cut(s) 512
Alw44I GTGCAC 1 cut(s) 1063
AlwI GGATC 2 cut(s) 50, 695
Aor13HI TCCGGA 1 cut(s) 198
AoxI GGCC 1 cut(s) 1244
ApaLI GTGCAC 1 cut(s) 1063
ApoI RAATTY 4 cut(s) 232, 631, 1181, 1352
ArsI GACNNNNNNTTYG 6 cut(s) 103, 135, 271, 303, 386, 418
Asp700I GAANNNNTTC 2 cut(s) 1002, 1185
AspLEI GCGC 3 cut(s) 649, 651, 874
AspS9I GGNCC 1 cut(s) 111
AsuC2I CCSGG 1 cut(s) 493
AsuHPI GGTGA 2 cut(s) 710, 1092
AsuII TTCGAA 1 cut(s) 91
AvaII GGWCC 1 cut(s) 111
BaeGI GKGCMC 2 cut(s) 481, 1067
BarI GAAGNNNNNNTAC 4 cut(s) 858, 890, 1068, 1100
BbsI GAAGAC 2 cut(s) 665, 1213
Bbv12I GWGCWC 1 cut(s) 1067
BccI CCATC 7 cut(s) 126, 200, 320, 496, 596, 680, 1109
BciT130I CCWGG 1 cut(s) 696
BclI TGATCA 1 cut(s) 594
BcnI CCSGG 1 cut(s) 493
BcoDI GTCTC 1 cut(s) 512
BisI GCNGC 1 cut(s) 1244
BlsI GCNGC 1 cut(s) 1245
Bme1390I CCNGG 2 cut(s) 493, 696
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 1375
BmrFI CCNGG 2 cut(s) 493, 696
BmsI GCATC 7 cut(s) 28, 49, 298, 467, 715, 778, 1171
BpiI GAAGAC 2 cut(s) 665, 1213
BpmI CTGGAG 1 cut(s) 461
Bpu14I TTCGAA 1 cut(s) 91
BpuEI CTTGAG 4 cut(s) 487, 494, 605, 1196
BpuMI CCSGG 1 cut(s) 493
Bsa29I ATCGAT 1 cut(s) 723
BsaAI YACGTR 1 cut(s) 1317
BsaBI GATNNNNATC 3 cut(s) 690, 816, 963
BsaWI WCCGGW 2 cut(s) 198, 1006
Bsc4I CCNNNNNNNGG 2 cut(s) 491, 805
Bse118I RCCGGY 1 cut(s) 1246
Bse1I ACTGG 1 cut(s) 444
Bse3DI GCAATG 1 cut(s) 1022
Bse8I GATNNNNATC 3 cut(s) 690, 816, 963
BseAI TCCGGA 1 cut(s) 198
BseBI CCWGG 1 cut(s) 696
BseCI ATCGAT 1 cut(s) 723
BseGI GGATG 3 cut(s) 273, 488, 793
BseJI GATNNNNATC 3 cut(s) 690, 816, 963
BseLI CCNNNNNNNGG 2 cut(s) 491, 805
BseMI GCAATG 1 cut(s) 1022
BseMII CTCAG 2 cut(s) 231, 927
BseNI ACTGG 1 cut(s) 444
BsePI GCGCGC 1 cut(s) 647
BseRI GAGGAG 1 cut(s) 474
BseSI GKGCMC 2 cut(s) 481, 1067
BseX3I CGGCCG 1 cut(s) 1244
BseYI CCCAGC 1 cut(s) 993
BsgI GTGCAG 1 cut(s) 855
Bsh1236I CGCG 3 cut(s) 647, 649, 1379
Bsh1285I CGRYCG 1 cut(s) 1247
BshFI GGCC 1 cut(s) 1246
BshVI ATCGAT 1 cut(s) 723
BsiEI CGRYCG 1 cut(s) 1247
BsiHKAI GWGCWC 1 cut(s) 1067
BsiSI CCGG 4 cut(s) 199, 492, 1007, 1247
BslI CCNNNNNNNGG 2 cut(s) 491, 805
BsmAI GTCTC 1 cut(s) 512
BsmI GAATGC 1 cut(s) 989
BsnI GGCC 1 cut(s) 1246
Bsp119I TTCGAA 1 cut(s) 91
Bsp1286I GDGCHC 2 cut(s) 481, 1067
Bsp13I TCCGGA 1 cut(s) 198
Bsp1407I TGTACA 1 cut(s) 678
Bsp143I GATC 5 cut(s) 42, 241, 594, 700, 817
BspACI CCGC 3 cut(s) 645, 1243, 1377
BspANI GGCC 1 cut(s) 1246
BspCNI CTCAG 2 cut(s) 230, 926
BspDI ATCGAT 1 cut(s) 723
BspEI TCCGGA 1 cut(s) 198
BspFNI CGCG 3 cut(s) 647, 649, 1379
BspHI TCATGA 1 cut(s) 979
BspLI GGNNCC 1 cut(s) 1375
BspPI GGATC 2 cut(s) 50, 695
BspQI GCTCTTC 1 cut(s) 981
BspT104I TTCGAA 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 1022
BsrFI RCCGGY 1 cut(s) 1246
BsrGI TGTACA 1 cut(s) 678
BsrI ACTGG 1 cut(s) 444
BssAI RCCGGY 1 cut(s) 1246
BssHII GCGCGC 1 cut(s) 647
BssMI GATC 5 cut(s) 42, 241, 594, 700, 817
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 3 cut(s) 305, 863, 1062
Bst6I CTCTTC 1 cut(s) 981
BstAUI TGTACA 1 cut(s) 678
BstBAI YACGTR 1 cut(s) 1317
BstBI TTCGAA 1 cut(s) 91
BstC8I GCNNGC 4 cut(s) 456, 649, 849, 1305
BstDEI CTNAG 2 cut(s) 217, 913
BstEII GGTNACC 1 cut(s) 1083
BstENI CCTNNNNNAGG 1 cut(s) 803
BstF5I GGATG 3 cut(s) 273, 488, 793
BstFNI CGCG 3 cut(s) 647, 649, 1379
BstHHI GCGC 3 cut(s) 649, 651, 874
BstKTI GATC 5 cut(s) 45, 244, 597, 703, 820
BstMAI GTCTC 1 cut(s) 512
BstMBI GATC 5 cut(s) 42, 241, 594, 700, 817
BstMCI CGRYCG 1 cut(s) 1247
BstMWI GCNNNNNNNGC 2 cut(s) 336, 833
BstNI CCWGG 1 cut(s) 696
BstNSI RCATGY 1 cut(s) 1071
BstPI GGTNACC 1 cut(s) 1083
BstSCI CCNGG 2 cut(s) 491, 694
BstSLI GKGCMC 2 cut(s) 481, 1067
BstUI CGCG 3 cut(s) 647, 649, 1379
BstV2I GAAGAC 2 cut(s) 665, 1213
BstZI CGGCCG 1 cut(s) 1244
Bsu15I ATCGAT 1 cut(s) 723
BsuRI GGCC 1 cut(s) 1246
BsuTUI ATCGAT 1 cut(s) 723
BtgZI GCGATG 1 cut(s) 1188
BtsCI GGATG 3 cut(s) 273, 488, 793
BtsI GCAGTG 2 cut(s) 339, 571
BtsIMutI CAGTG 5 cut(s) 52, 301, 339, 437, 571
Cac8I GCNNGC 4 cut(s) 456, 649, 849, 1305
CciI TCATGA 1 cut(s) 979
CfoI GCGC 3 cut(s) 649, 651, 874
Cfr10I RCCGGY 1 cut(s) 1246
Cfr13I GGNCC 1 cut(s) 111
ClaI ATCGAT 1 cut(s) 723
Csp6I GTAC 2 cut(s) 248, 679
CviAII CATG 3 cut(s) 427, 980, 1068
CviQI GTAC 2 cut(s) 248, 679
DdeI CTNAG 2 cut(s) 217, 913
DpnI GATC 5 cut(s) 44, 243, 596, 702, 819
DpnII GATC 5 cut(s) 42, 241, 594, 700, 817
EaeI YGGCCR 1 cut(s) 1244
EagI CGGCCG 1 cut(s) 1244
Eam1104I CTCTTC 1 cut(s) 981
EarI CTCTTC 1 cut(s) 981
EclXI CGGCCG 1 cut(s) 1244
Eco47I GGWCC 1 cut(s) 111
Eco52I CGGCCG 1 cut(s) 1244
Eco57I CTGAAG 2 cut(s) 677, 1095
Eco91I GGTNACC 1 cut(s) 1083
EcoNI CCTNNNNNAGG 1 cut(s) 803
EcoO65I GGTNACC 1 cut(s) 1083
EcoRI GAATTC 1 cut(s) 1352
EcoRII CCWGG 1 cut(s) 694
FaeI CATG 3 cut(s) 430, 983, 1071
FalI AAGNNNNNCTT 2 cut(s) 1205, 1237
FatI CATG 3 cut(s) 426, 979, 1067
FbaI TGATCA 1 cut(s) 594
Fnu4HI GCNGC 1 cut(s) 1244
FokI GGATG 3 cut(s) 260, 475, 800
Fsp4HI GCNGC 1 cut(s) 1244
GlaI GCGC 3 cut(s) 648, 650, 873
GluI GCNGC 1 cut(s) 1244
GsaI CCCAGC 1 cut(s) 997
GsuI CTGGAG 1 cut(s) 461
HaeIII GGCC 1 cut(s) 1246
HapII CCGG 4 cut(s) 199, 492, 1007, 1247
HhaI GCGC 3 cut(s) 649, 651, 874
Hin1II CATG 3 cut(s) 430, 983, 1071
Hin6I GCGC 3 cut(s) 647, 649, 872
HinP1I GCGC 3 cut(s) 647, 649, 872
HinfI GANTC 4 cut(s) 964, 1097, 1171, 1233
HpaII CCGG 4 cut(s) 199, 492, 1007, 1247
HphI GGTGA 2 cut(s) 710, 1092
Hpy166II GTNNAC 3 cut(s) 147, 248, 1065
Hpy188I TCNGA 5 cut(s) 220, 271, 278, 657, 1126
Hpy188III TCNNGA 9 cut(s) 109, 164, 199, 448, 821, 937, 980, 1034, 1213
Hpy8I GTNNAC 3 cut(s) 147, 248, 1065
HpyAV CCTTC 2 cut(s) 941, 1087
HpyCH4III ACNGT 3 cut(s) 305, 863, 1062
HpyCH4IV ACGT 1 cut(s) 1316
HpyCH4V TGCA 9 cut(s) 50, 62, 339, 432, 791, 836, 1027, 1065, 1345
HpyF10VI GCNNNNNNNGC 2 cut(s) 336, 833
HpyF3I CTNAG 2 cut(s) 217, 913
HpySE526I ACGT 1 cut(s) 1316
Hsp92II CATG 3 cut(s) 430, 983, 1071
HspAI GCGC 3 cut(s) 647, 649, 872
Kpn2I TCCGGA 1 cut(s) 198
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 5 cut(s) 42, 241, 594, 700, 817
LguI GCTCTTC 1 cut(s) 981
LweI GCATC 7 cut(s) 28, 49, 298, 467, 715, 778, 1171
MaeII ACGT 1 cut(s) 1316
MaeIII GTNAC 4 cut(s) 71, 865, 1083, 1357
MalI GATC 5 cut(s) 44, 243, 596, 702, 819
MboI GATC 5 cut(s) 42, 241, 594, 700, 817
MboII GAAGA 7 cut(s) 80, 509, 670, 968, 1124, 1139, 1213
MhlI GDGCHC 2 cut(s) 481, 1067
MluCI AATT 9 cut(s) 140, 232, 463, 631, 801, 1181, 1308, 1352, 1394
MmeI TCCRAC 1 cut(s) 592
MnlI CCTC 9 cut(s) 423, 436, 492, 495, 580, 937, 1220, 1223, 1330
MroI TCCGGA 1 cut(s) 198
MroXI GAANNNNTTC 2 cut(s) 1002, 1185
MseI TTAA 4 cut(s) 33, 804, 897, 1277
MslI CAYNNNNRTG 2 cut(s) 306, 493
MspI CCGG 4 cut(s) 199, 492, 1007, 1247
MspR9I CCNGG 2 cut(s) 493, 696
Mva1269I GAATGC 1 cut(s) 989
MvaI CCWGG 1 cut(s) 696
MvnI CGCG 3 cut(s) 647, 649, 1379
MwoI GCNNNNNNNGC 2 cut(s) 336, 833
NciI CCSGG 1 cut(s) 493
NdeII GATC 5 cut(s) 42, 241, 594, 700, 817
NlaIII CATG 3 cut(s) 430, 983, 1071
NlaIV GGNNCC 1 cut(s) 1375
NmeAIII GCCGAG 1 cut(s) 1291
NmuCI GTSAC 1 cut(s) 71
NspI RCATGY 1 cut(s) 1071
NspV TTCGAA 1 cut(s) 91
PagI TCATGA 1 cut(s) 979
PauI GCGCGC 1 cut(s) 647
PciI ACATGT 1 cut(s) 1067
PciSI GCTCTTC 1 cut(s) 981
PctI GAATGC 1 cut(s) 989
PdmI GAANNNNTTC 2 cut(s) 1002, 1185
PfeI GAWTC 4 cut(s) 964, 1097, 1171, 1233
PkrI GCNGC 1 cut(s) 1245
Ppu21I YACGTR 1 cut(s) 1317
PscI ACATGT 1 cut(s) 1067
Psp6I CCWGG 1 cut(s) 694
PspEI GGTNACC 1 cut(s) 1083
PspFI CCCAGC 1 cut(s) 993
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 1 cut(s) 1375
PspPI GGNCC 1 cut(s) 111
PteI GCGCGC 1 cut(s) 647
RsaI GTAC 2 cut(s) 249, 680
RsaNI GTAC 2 cut(s) 248, 679
RseI CAYNNNNRTG 2 cut(s) 306, 493
SapI GCTCTTC 1 cut(s) 981
SaqAI TTAA 4 cut(s) 33, 804, 897, 1277
SatI GCNGC 1 cut(s) 1244
Sau3AI GATC 5 cut(s) 42, 241, 594, 700, 817
Sau96I GGNCC 1 cut(s) 111
ScrFI CCNGG 2 cut(s) 493, 696
SduI GDGCHC 2 cut(s) 481, 1067
SfaNI GCATC 7 cut(s) 28, 49, 298, 467, 715, 778, 1171
SfuI TTCGAA 1 cut(s) 91
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 2 cut(s) 306, 493
SmlI CTYRAG 4 cut(s) 502, 509, 584, 1211
SmoI CTYRAG 4 cut(s) 502, 509, 584, 1211
Sse9I AATT 9 cut(s) 140, 232, 463, 631, 801, 1181, 1308, 1352, 1394
SsiI CCGC 3 cut(s) 645, 1243, 1377
SspI AATATT 1 cut(s) 1154
StyD4I CCNGG 2 cut(s) 491, 694
TaaI ACNGT 3 cut(s) 305, 863, 1062
TaiI ACGT 1 cut(s) 1319
TaqI TCGA 5 cut(s) 14, 91, 723, 738, 770
TasI AATT 9 cut(s) 140, 232, 463, 631, 801, 1181, 1308, 1352, 1394
TatI WGTACW 2 cut(s) 247, 678
TauI GCSGC 1 cut(s) 1246
TfiI GAWTC 4 cut(s) 964, 1097, 1171, 1233
Tru1I TTAA 4 cut(s) 33, 804, 897, 1277
Tru9I TTAA 4 cut(s) 33, 804, 897, 1277
TscAI CASTG 5 cut(s) 52, 308, 346, 444, 578
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 8 cut(s) 415, 709, 968, 977, 996, 1161, 1213, 1301
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 5 cut(s) 52, 308, 346, 444, 578
VneI GTGCAC 1 cut(s) 1063
VpaK11BI GGWCC 1 cut(s) 111
XagI CCTNNNNNAGG 1 cut(s) 803
XapI RAATTY 4 cut(s) 232, 631, 1181, 1352
XceI RCATGY 1 cut(s) 1071
XmnI GAANNNNTTC 2 cut(s) 1002, 1185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.