RchiOBHm_Chr5g0060061

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000079
Physical Location & Seq
Forward (+)
65195078 .. 65195560
483 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33660

Sequence Viewer

Length: 483 bp
ATGTGCAAAACCCTAAGGGTTTTGAAACTGTATCTGAAGCGGTTTGCCGACACAAAACCTCCTACATCTGGCTGTTGCTTCCCAAGTCTTAAGTTCCTCCACGTTACGGTTTTTAATCCTGTCACAACAATGCAGAAGCTTTTCTCTCGCTGCCCTGTACTTGAAGATTTGACGATAGATGGAACCATTGATGTGGATTTTATTGGGATCGATGACAATTTTAAGATCTCTGCTCCAGAACTGAAGATGTTGAGAATAAGTTTGGAAATTAATCAGGATCCTATCGATGTTTACATCAATTCCCCAAATCTTGAGAACATTGATCTAAAGCGGTTTGGTTTGACTAATTTTTTTCTTATGGGGAGTGAAAAATCCCTGGTCAATGCCAGTGTTGCGTTCAGAGGACGGTCTGAATTTGAAGCGGAAGAACAGCAGGTACTATCCAACGTACTGTGCAATGGCGCTTCTGGATCAAGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

160

Amino Acids

17.94

Weight (kDa)

5.44

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 2 - 88 1.9e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 424
AciI CCGC 3 cut(s) 40, 331, 422
AclWI GGATC 4 cut(s) 215, 272, 285, 478
AcsI RAATTY 1 cut(s) 413
AcuI CTGAAG 2 cut(s) 56, 263
AfaI GTAC 3 cut(s) 159, 438, 450
AfiI CCNNNNNNNGG 2 cut(s) 68, 106
AflII CTTAAG 1 cut(s) 89
AgsI TTSAA 3 cut(s) 25, 164, 419
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
AlwI GGATC 4 cut(s) 215, 272, 285, 478
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 413
AseI ATTAAT 1 cut(s) 270
Asp700I GAANNNNTTC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 464
AxyI CCTNAGG 1 cut(s) 14
BamHI GGATCC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 137
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 377
BfoI RGCGCY 1 cut(s) 465
BfrI CTTAAG 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 424
BglII AGATCT 1 cut(s) 225
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 377
BmiI GGNNCC 2 cut(s) 184, 279
BmrFI CCNGG 1 cut(s) 377
BpmI CTGGAG 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 332
Bsa29I ATCGAT 2 cut(s) 210, 285
BsaJI CCNNGG 1 cut(s) 375
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 106
Bse1I ACTGG 1 cut(s) 387
Bse21I CCTNAGG 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 463
BseBI CCWGG 1 cut(s) 377
BseCI ATCGAT 2 cut(s) 210, 285
BseDI CCNNGG 1 cut(s) 375
BseLI CCNNNNNNNGG 2 cut(s) 68, 106
BseMI GCAATG 1 cut(s) 463
BseNI ACTGG 1 cut(s) 387
BseXI GCAGC 1 cut(s) 137
BshVI ATCGAT 2 cut(s) 210, 285
BslI CCNNNNNNNGG 2 cut(s) 68, 106
Bsp143I GATC 5 cut(s) 207, 225, 277, 322, 470
BspACI CCGC 3 cut(s) 40, 331, 422
BspDI ATCGAT 2 cut(s) 210, 285
BspLI GGNNCC 2 cut(s) 184, 279
BspMI ACCTGC 1 cut(s) 424
BspPI GGATC 4 cut(s) 215, 272, 285, 478
BspTI CTTAAG 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 463
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 5 cut(s) 207, 225, 277, 322, 470
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 4 cut(s) 30, 109, 408, 453
BstAFI CTTAAG 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 5 cut(s) 210, 228, 280, 325, 473
BstMBI GATC 5 cut(s) 207, 225, 277, 322, 470
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNI CCWGG 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 137
BstX2I RGATCY 2 cut(s) 225, 277
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 2 cut(s) 225, 277
Bsu15I ATCGAT 2 cut(s) 210, 285
Bsu36I CCTNAGG 1 cut(s) 14
BsuTUI ATCGAT 2 cut(s) 210, 285
BtsIMutI CAGTG 1 cut(s) 394
BveI ACCTGC 1 cut(s) 424
CfoI GCGC 1 cut(s) 464
ClaI ATCGAT 2 cut(s) 210, 285
Csp6I GTAC 3 cut(s) 158, 437, 449
CviJI RGCY 2 cut(s) 72, 139
CviKI_1 RGCY 2 cut(s) 72, 139
CviQI GTAC 3 cut(s) 158, 437, 449
DdeI CTNAG 1 cut(s) 14
DpnI GATC 5 cut(s) 209, 227, 279, 324, 472
DpnII GATC 5 cut(s) 207, 225, 277, 322, 470
Eco57I CTGAAG 2 cut(s) 56, 263
Eco81I CCTNAGG 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 375
FaiI YATR 1 cut(s) 359
Fnu4HI GCNGC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 151
GlaI GCGC 1 cut(s) 463
GluI GCNGC 1 cut(s) 151
GsuI CTGGAG 1 cut(s) 219
HaeII RGCGCY 1 cut(s) 465
HhaI GCGC 1 cut(s) 464
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HindIII AAGCTT 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 3 cut(s) 36, 401, 412
Hpy188III TCNNGA 4 cut(s) 236, 275, 311, 468
Hpy8I GTNNAC 1 cut(s) 292
HpyCH4III ACNGT 4 cut(s) 30, 109, 408, 453
HpyCH4IV ACGT 2 cut(s) 102, 447
HpyCH4V TGCA 3 cut(s) 6, 133, 456
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 2 cut(s) 102, 447
HspAI GCGC 1 cut(s) 462
Kzo9I GATC 5 cut(s) 207, 225, 277, 322, 470
LmnI GCTCC 1 cut(s) 238
Lsp1109I GCAGC 1 cut(s) 137
MaeII ACGT 2 cut(s) 102, 447
MaeIII GTNAC 2 cut(s) 103, 121
MalI GATC 5 cut(s) 209, 227, 279, 324, 472
MboI GATC 5 cut(s) 207, 225, 277, 322, 470
MboII GAAGA 3 cut(s) 176, 256, 437
MflI RGATCY 2 cut(s) 225, 277
MluCI AATT 5 cut(s) 217, 267, 298, 346, 413
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 3 cut(s) 69, 107, 395
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 4 cut(s) 90, 114, 222, 270
MslI CAYNNNNRTG 2 cut(s) 128, 191
MspCI CTTAAG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 392
NdeII GATC 5 cut(s) 207, 225, 277, 322, 470
NlaIV GGNNCC 2 cut(s) 184, 279
NmuCI GTSAC 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 152
PshBI ATTAAT 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 2 cut(s) 184, 279
PsrI GAACNNNNNNTAC 2 cut(s) 420, 452
PsuI RGATCY 2 cut(s) 225, 277
RsaI GTAC 3 cut(s) 159, 438, 450
RsaNI GTAC 3 cut(s) 158, 437, 449
RseI CAYNNNNRTG 2 cut(s) 128, 191
SaqAI TTAA 4 cut(s) 90, 114, 222, 270
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 5 cut(s) 207, 225, 277, 322, 470
ScrFI CCNGG 1 cut(s) 377
SetI ASST 5 cut(s) 61, 105, 141, 438, 450
SmiMI CAYNNNNRTG 2 cut(s) 128, 191
SmlI CTYRAG 2 cut(s) 89, 311
SmoI CTYRAG 2 cut(s) 89, 311
Sse9I AATT 5 cut(s) 217, 267, 298, 346, 413
SsiI CCGC 3 cut(s) 40, 331, 422
StyD4I CCNGG 1 cut(s) 375
TaaI ACNGT 4 cut(s) 30, 109, 408, 453
TaiI ACGT 2 cut(s) 105, 450
TaqI TCGA 2 cut(s) 210, 285
TasI AATT 5 cut(s) 217, 267, 298, 346, 413
TatI WGTACW 1 cut(s) 157
Tru1I TTAA 4 cut(s) 90, 114, 222, 270
Tru9I TTAA 4 cut(s) 90, 114, 222, 270
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 121
TspRI CASTG 1 cut(s) 394
Vha464I CTTAAG 1 cut(s) 89
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 1 cut(s) 413
XmnI GAANNNNTTC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.