RLG00000003904

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000079
Physical Location & Seq
Reverse (-)
54101778 .. 54127599
25822 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003904

Sequence Viewer

Length: 2781 bp
ATGGAGAAGCTCTTTTCTCATTTCCCTATAATTGAAGATCTGGTTATAGATGGAAACCTTGAAGACCCATCAGCTTTCAAACTTGATATCTCTGCACCTAAACTAAAGAGACTACAAATTAGATTGACTGTCCATAAGTGTGCTATGAATTCTATTAATTTTGTAAATTATGTGTGCCAAATTTACATTAATGCTAATGCTCCAGATCTTGAAGAGTTAGATATCTGCTCTGATGTTTTGGTGAGCTTTTCTTTGAAGAATGCCAAATGTCTAAGCAAAGCTGAGATAGATTTCTCTGATGTGAAAGAGCTTGAGGACCATGATTGTTTCCTTGGCCTACCAATCTGCCACCTCCGCCACCACCATCTCTGGCGGCCGACCTTGATCATTGTCAAGCCCGATCATGGTGACCCTAAAGTTGTCCGCCACCGCTCGCAATCAATAGAAGCCAAAAAAACTGCAACCCGAGAGCCGCCGCTCCCCTGTCCAAAAACCACGCTTGACCTGCTGGAAAGTAGAGGGCTCGCAGACTTCCGAATCCCACCGGTCACCGTCCCGCTTGCAACACTACCGCCCAGAGATCTGCCTGCCGACCCAGACCCCAATCATACCGTTGCCTGGGCTACCTCCGCTCCTGGACCCACCCGCTGCTTGCCCAATCGTGCCGGAAATCGCTCGACGCCCTATGGCGTTGGCGCCACCAAGGCGCCGGAGTCCAGTGGCAGCAAGACATGTTCTCAGATCAGGGAGCCGCCTACTCAGCCCCAATTGGCAGAGCCTCCGCCATCGAAACTGGAACCAAGCTCTACATCTCTAATCCTGACTATGGCGTTTCCAACGAGGACATCAGGAAGCCTCCGCCATGTGATTATGTTGTTCCTCTCGATCCCCTACCTCCTCGGCTTCCTCTTCTTCTTCGTCGCTGCCCTCCTCTTCGTCGACTGTAGACAGAGGAGTGTGTCAAGACCGGGTCTAAGGAGATCGATAAGTTGCCCTGGAAGGGCGGGAGTGACACCAACCCCGATTACGAGTGTGTCCGGTCCAAGCTCCGAAAGACGGCTCTACGTAATGGCTTTGCCGTCTTGCTTTTTCGGGCACGGCGTGGGTGCCCCTTCGCCAAGCTTGAAGGCTAGGGTCCTAAGCGAGGCCGCTGACATAAGAACTGTCACACTCTCCCCCTCTCACCGTCTCAAGCATTCACCTGCTTGGAGGAGCTCTCAGACTCGCAGTGAAAGTGACCTAGTTTCCATCCCAACTCTCTCAGCAGCCAAACACGGCCGGCCGGTGCTTTTTACGACGACAATTGGCTCCACCATTGATATTCATATCAGTCGATGCCCGGGAAACATTCATAGGTTCCGTCTTCTAACTACTGACATGATGAATGTTTCTCTTTTTGATGCTTGGGTTTCCACTGCCATAAAGCATAATGTTGTTGAACTTGTTCTTAGTTCAGGCTTTCCTTGCTTGCCGGATTTTGAGATTCCGAGATGTCTTTTCATGTGCAACACATTGGTTAGTTTGAAGTTGGTGGTGCACAAAAATATTCGTGCCGTTACTCCTCCCTCACATTGTTTCCCCTGTCTCAAGTTGCTGCATGTTACATTTGGGTATCCCGATTCTCACACGGTGGAGAAATTATTTCCTTCTTTCCCTGTACTTGAAGATCTTGTTATAGATGGACAAGATGAAGATGCGTCAGCTTTCAATCTTGTTATATCTGCACCCAAACTGAAAAGATTGCAAATTAGCTTCATTGTCCATAAATTTGCTATGATAGCTGCTGCAAATCATTTGGAGGATTATGAAAATTATGGGTGCCAAATTTTTGTCAGTGTTGATGCTCCAAATCTTGAAGAGTTAGATATCTACTATGATTTTCTGGTTAGCTATTCTTTGAAGAATGCCAAATGTCTGAGGAAAGTCGAGATAGATTTCCTAGATGTGAAAGAGCTTGTGGACTCTGAATATTTTCTTGGCCCCTTTGTGAATCGTGTACTTCTCAGTCGATGCCCGGGAAACATTCATAGGTTCCGTCTTCTAACTACTGACATGATGAATGTTTCTCTTTTTGATGCTTGGGTTTCCACTGCCATAAAGCATAATGTTGTTGAACTAGTTCTTAGCTTGGAGACTCTTCGCTTGCCGAATTTTGAGATTCCGAGATGTCTTTTCATGTGCAACACATTGGTTAGTTTGAAATTGGGTTTGTACAAAAATATTTGTGCCGTTACTCCTCCCTCACATTGTTTCCCCTGTCTCAAGTTGCTACATGTTACATTTTGCTTTCCTGATTCTCACACGGTGGAGAAGCTGTTTTCTTGTGTCCCTGTACTTGAAGATCTTATTATAGATGGAGAAGGTTCAGATGGGTTAGCTTTCAATCTTGTTATAGCTGCACCCAAACTGAAAAGACTGCAAATTAGTTTCATTGTCCTTAAATTTGCTATGATAACTGCAAATCGTTTTGGGGATTATAGAAATTATGGGTGCCAAATTTTTGTTACTGCTGATGCTCCAAATCTTGAAGAGTTAGACATCTACTATGATTTTCTGGTCAGCTATTCTTTGAAGAATGCCAGATGTCTGAGGAAAGTCAAGATAGATTTCTTAGATGTGAAAGAGCTTGTGGACCACCTTGAGGATCATGGATCGGAGCTCGTCCTCCGTCGTCGTGTAGCCCAGGTGTCTCGCCGAGCTCCGACAACGATACAACAACTTTCTAACTCTCGTTGCTGTGACGGAGGCCGAGGCATACGCTGCATCTTATGGCTTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

927

Amino Acids

103.44

Weight (kDa)

8.33

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 467 - 621 4.6e-11 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At5g56370 PF24758 692 - 897 2.8e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1210
Acc36I ACCTGC 2 cut(s) 513, 1210
AccB1I GGYRCC 5 cut(s) 695, 706, 1106, 1818, 2490
AccBSI CCGCTC 3 cut(s) 432, 478, 632
AccI GTMKAC 2 cut(s) 939, 946
AclWI GGATC 3 cut(s) 880, 2652, 2659
AcoI YGGCCR 3 cut(s) 374, 1276, 1280
AcsI RAATTY 7 cut(s) 148, 180, 1766, 1824, 2149, 2441, 2496
AcyI GRCGYC 3 cut(s) 680, 696, 707
AdeI CACNNNGTG 3 cut(s) 1102, 1630, 2305
AfaI GTAC 4 cut(s) 1659, 1998, 2213, 2334
AfiI CCNNNNNNNGG 7 cut(s) 404, 618, 826, 1000, 1056, 1144, 2641
AflIII ACRYGT 2 cut(s) 731, 2272
AgeI ACCGGT 1 cut(s) 544
AhlI ACTAGT 1 cut(s) 2116
AjnI CCWGG 4 cut(s) 617, 634, 994, 2682
AjuI GAANNNNNNNTTGG 2 cut(s) 1959, 1991
Alw21I GWGCWC 4 cut(s) 1217, 1539, 2661, 2701
Alw26I GTCTC 6 cut(s) 103, 1193, 1589, 2126, 2264, 2694
Alw44I GTGCAC 1 cut(s) 1535
AlwI GGATC 3 cut(s) 880, 2652, 2659
Ama87I CYCGRG 3 cut(s) 465, 1339, 2014
AoxI GGCC 7 cut(s) 334, 374, 1146, 1276, 1280, 1978, 2746
ApaLI GTGCAC 1 cut(s) 1535
ApeKI GCWGC 9 cut(s) 648, 723, 923, 1265, 1594, 1781, 1784, 2396, 2760
ApoI RAATTY 7 cut(s) 148, 180, 1766, 1824, 2149, 2441, 2496
AseI ATTAAT 2 cut(s) 156, 189
AsiGI ACCGGT 1 cut(s) 544
Asp700I GAANNNNTTC 3 cut(s) 1443, 1971, 2118
AspLEI GCGC 2 cut(s) 698, 709
AspS9I GGNCC 6 cut(s) 316, 638, 1040, 1135, 1979, 2632
AsuC2I CCSGG 5 cut(s) 969, 1340, 1341, 2015, 2016
AsuHPI GGTGA 5 cut(s) 253, 419, 541, 1175, 1191
AvaI CYCGRG 3 cut(s) 465, 1339, 2014
AvaII GGWCC 5 cut(s) 316, 638, 1040, 1135, 2632
BaeGI GKGCMC 3 cut(s) 1098, 1111, 1539
BanI GGYRCC 5 cut(s) 695, 706, 1106, 1818, 2490
BanII GRGCYC 4 cut(s) 525, 1217, 2661, 2701
BbsI GAAGAC 3 cut(s) 69, 1355, 2030
Bbv12I GWGCWC 4 cut(s) 1217, 1539, 2661, 2701
BbvI GCAGC 9 cut(s) 635, 735, 910, 1277, 1581, 1768, 1771, 2383, 2747
BccI CCATC 8 cut(s) 44, 76, 372, 793, 1256, 1673, 2348, 2363
BceAI ACGGC 6 cut(s) 1063, 1073, 1114, 1291, 1538, 2213
BciT130I CCWGG 4 cut(s) 619, 636, 996, 2684
BciVI GTATCC 1 cut(s) 1623
BclI TGATCA 1 cut(s) 384
BcnI CCSGG 5 cut(s) 969, 1340, 1341, 2015, 2016
BcoDI GTCTC 6 cut(s) 103, 1193, 1589, 2126, 2264, 2694
BcuI ACTAGT 1 cut(s) 2116
BfaI CTAG 4 cut(s) 1131, 1241, 1940, 2117
BfmI CTRYAG 1 cut(s) 943
BfoI RGCGCY 2 cut(s) 699, 710
BfuAI ACCTGC 2 cut(s) 513, 1210
BfuI GTATCC 1 cut(s) 1623
BglI GCCNNNNNGGC 1 cut(s) 704
BglII AGATCT 5 cut(s) 37, 205, 580, 1666, 2341
Bme1390I CCNGG 9 cut(s) 619, 636, 969, 996, 1340, 1341, 2015, 2016, 2684
Bme18I GGWCC 5 cut(s) 316, 638, 1040, 1135, 2632
BmeT110I CYCGRG 3 cut(s) 465, 1339, 2014
BmgT120I GGNCC 6 cut(s) 316, 638, 1040, 1135, 1979, 2632
BmrFI CCNGG 9 cut(s) 619, 636, 969, 996, 1340, 1341, 2015, 2016, 2684
BmsI GCATC 8 cut(s) 1325, 1390, 1684, 1831, 2000, 2065, 2503, 2772
BpiI GAAGAC 3 cut(s) 69, 1355, 2030
BplI GAGNNNNNCTC 2 cut(s) 1201, 1233
BpmI CTGGAG 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 1139
BpuEI CTTGAG 5 cut(s) 332, 1175, 1571, 2246, 2660
BpuMI CCSGG 5 cut(s) 969, 1340, 1341, 2015, 2016
Bsa29I ATCGAT 1 cut(s) 983
BsaAI YACGTR 1 cut(s) 1066
BsaHI GRCGYC 3 cut(s) 680, 696, 707
BsaJI CCNNGG 9 cut(s) 331, 618, 702, 898, 994, 1339, 2014, 2682, 2749
BsaWI WCCGGW 2 cut(s) 544, 1037
BsaXI ACNNNNNCTCC 4 cut(s) 616, 646, 2300, 2330
Bsc4I CCNNNNNNNGG 7 cut(s) 404, 618, 826, 1000, 1056, 1144, 2641
Bse118I RCCGGY 3 cut(s) 544, 1278, 1282
Bse1I ACTGG 2 cut(s) 717, 798
BseBI CCWGG 4 cut(s) 619, 636, 996, 2684
BseCI ATCGAT 1 cut(s) 983
BseDI CCNNGG 9 cut(s) 331, 618, 702, 898, 994, 1339, 2014, 2682, 2749
BseGI GGATG 1 cut(s) 1248
BseLI CCNNNNNNNGG 7 cut(s) 404, 618, 826, 1000, 1056, 1144, 2641
BseMII CTCAG 8 cut(s) 273, 752, 773, 1232, 1275, 1907, 2017, 2579
BseNI ACTGG 2 cut(s) 717, 798
BseRI GAGGAG 6 cut(s) 887, 920, 967, 1225, 1551, 2226
BseSI GKGCMC 3 cut(s) 1098, 1111, 1539
BseX3I CGGCCG 3 cut(s) 374, 1276, 1280
BseXI GCAGC 9 cut(s) 635, 735, 910, 1277, 1581, 1768, 1771, 2383, 2747
BsgI GTGCAG 3 cut(s) 78, 1707, 2382
Bsh1285I CGRYCG 3 cut(s) 377, 1279, 1283
BshFI GGCC 7 cut(s) 336, 376, 1148, 1278, 1282, 1980, 2748
BshNI GGYRCC 5 cut(s) 695, 706, 1106, 1818, 2490
BshTI ACCGGT 1 cut(s) 544
BshVI ATCGAT 1 cut(s) 983
BsiEI CGRYCG 3 cut(s) 377, 1279, 1283
BsiHKAI GWGCWC 4 cut(s) 1217, 1539, 2661, 2701
BsiHKCI CYCGRG 3 cut(s) 465, 1339, 2014
BslFI GGGAC 2 cut(s) 539, 2312
BslI CCNNNNNNNGG 7 cut(s) 404, 618, 826, 1000, 1056, 1144, 2641
BsmAI GTCTC 6 cut(s) 103, 1193, 1589, 2126, 2264, 2694
BsmBI CGTCTC 1 cut(s) 1193
BsmFI GGGAC 2 cut(s) 539, 2312
BsmI GAATGC 4 cut(s) 265, 1195, 1909, 2581
BsnI GGCC 7 cut(s) 336, 376, 1148, 1278, 1282, 1980, 2748
BsoBI CYCGRG 3 cut(s) 465, 1339, 2014
Bsp1286I GDGCHC 7 cut(s) 525, 1098, 1111, 1217, 1539, 2661, 2701
Bsp1407I TGTACA 1 cut(s) 2211
BspANI GGCC 7 cut(s) 336, 376, 1148, 1278, 1282, 1980, 2748
BspCNI CTCAG 8 cut(s) 274, 751, 772, 1231, 1274, 1908, 2016, 2580
BspDI ATCGAT 1 cut(s) 983
BspMI ACCTGC 2 cut(s) 513, 1210
BspPI GGATC 3 cut(s) 880, 2652, 2659
BspT107I GGYRCC 5 cut(s) 695, 706, 1106, 1818, 2490
BsrBI CCGCTC 3 cut(s) 432, 478, 632
BsrFI RCCGGY 3 cut(s) 544, 1278, 1282
BsrGI TGTACA 1 cut(s) 2211
BsrI ACTGG 2 cut(s) 717, 798
BssAI RCCGGY 3 cut(s) 544, 1278, 1282
BssECI CCNNGG 9 cut(s) 331, 618, 702, 898, 994, 1339, 2014, 2682, 2749
BssNI GRCGYC 3 cut(s) 680, 696, 707
BssT1I CCWWGG 2 cut(s) 331, 702
Bst2UI CCWGG 4 cut(s) 619, 636, 996, 2684
Bst4CI ACNGT 8 cut(s) 130, 553, 613, 944, 1165, 1187, 1630, 2305
Bst6I CTCTTC 6 cut(s) 207, 914, 938, 1851, 2142, 2523
BstACI GRCGYC 3 cut(s) 680, 696, 707
BstAPI GCANNNNNTGC 1 cut(s) 2760
BstAUI TGTACA 1 cut(s) 2211
BstBAI YACGTR 1 cut(s) 1066
BstC8I GCNNGC 8 cut(s) 434, 525, 561, 588, 653, 1280, 1469, 2144
BstEII GGTNACC 2 cut(s) 407, 547
BstENI CCTNNNNNAGG 1 cut(s) 1142
BstF5I GGATG 1 cut(s) 1248
BstH2I RGCGCY 2 cut(s) 699, 710
BstHHI GCGC 2 cut(s) 698, 709
BstMAI GTCTC 6 cut(s) 103, 1193, 1589, 2126, 2264, 2694
BstMCI CGRYCG 3 cut(s) 377, 1279, 1283
BstMWI GCNNNNNNNGC 8 cut(s) 354, 505, 629, 704, 760, 1464, 1778, 2760
BstNI CCWGG 4 cut(s) 619, 636, 996, 2684
BstNSI RCATGY 3 cut(s) 735, 1601, 2276
BstPI GGTNACC 2 cut(s) 407, 547
BstSCI CCNGG 9 cut(s) 617, 634, 967, 994, 1338, 1339, 2013, 2014, 2682
BstSFI CTRYAG 1 cut(s) 943
BstSLI GKGCMC 3 cut(s) 1098, 1111, 1539
BstSNI TACGTA 1 cut(s) 1066
BstV1I GCAGC 9 cut(s) 635, 735, 910, 1277, 1581, 1768, 1771, 2383, 2747
BstV2I GAAGAC 3 cut(s) 69, 1355, 2030
BstX2I RGATCY 5 cut(s) 37, 205, 580, 1666, 2341
BstYI RGATCY 5 cut(s) 37, 205, 580, 1666, 2341
BstZI CGGCCG 3 cut(s) 374, 1276, 1280
Bsu15I ATCGAT 1 cut(s) 983
BsuI GTATCC 1 cut(s) 1623
BsuRI GGCC 7 cut(s) 336, 376, 1148, 1278, 1282, 1980, 2748
BsuTUI ATCGAT 1 cut(s) 983
BtsCI GGATG 1 cut(s) 1248
BtsI GCAGTG 3 cut(s) 1234, 1413, 2088
BtsIMutI CAGTG 5 cut(s) 724, 1234, 1413, 1840, 2088
BveI ACCTGC 2 cut(s) 513, 1210
Cac8I GCNNGC 8 cut(s) 434, 525, 561, 588, 653, 1280, 1469, 2144
CfoI GCGC 2 cut(s) 698, 709
Cfr10I RCCGGY 3 cut(s) 544, 1278, 1282
Cfr13I GGNCC 6 cut(s) 316, 638, 1040, 1135, 1979, 2632
Cfr9I CCCGGG 2 cut(s) 1339, 2014
ClaI ATCGAT 1 cut(s) 983
CseI GACGC 2 cut(s) 688, 1686
Csp6I GTAC 4 cut(s) 1658, 1997, 2212, 2333
CspAI ACCGGT 1 cut(s) 544
CviQI GTAC 4 cut(s) 1658, 1997, 2212, 2333
DinI GGCGCC 2 cut(s) 697, 708
DraIII CACNNNGTG 3 cut(s) 1102, 1630, 2305
EaeI YGGCCR 3 cut(s) 374, 1276, 1280
EagI CGGCCG 3 cut(s) 374, 1276, 1280
Eam1104I CTCTTC 6 cut(s) 207, 914, 938, 1851, 2142, 2523
EarI CTCTTC 6 cut(s) 207, 914, 938, 1851, 2142, 2523
EciI GGCGGA 4 cut(s) 344, 413, 771, 848
Ecl136II GAGCTC 3 cut(s) 1215, 2659, 2699
EclXI CGGCCG 3 cut(s) 374, 1276, 1280
Eco105I TACGTA 1 cut(s) 1066
Eco130I CCWWGG 2 cut(s) 331, 702
Eco24I GRGCYC 4 cut(s) 525, 1217, 2661, 2701
Eco32I GATATC 3 cut(s) 88, 223, 1867
Eco47I GGWCC 5 cut(s) 316, 638, 1040, 1135, 2632
Eco52I CGGCCG 3 cut(s) 374, 1276, 1280
Eco53kI GAGCTC 3 cut(s) 1215, 2659, 2699
Eco88I CYCGRG 3 cut(s) 465, 1339, 2014
Eco91I GGTNACC 2 cut(s) 407, 547
EcoICRI GAGCTC 3 cut(s) 1215, 2659, 2699
EcoNI CCTNNNNNAGG 1 cut(s) 1142
EcoO109I RGGNCCY 1 cut(s) 1135
EcoO65I GGTNACC 2 cut(s) 407, 547
EcoRI GAATTC 1 cut(s) 148
EcoRII CCWGG 4 cut(s) 617, 634, 994, 2682
EcoRV GATATC 3 cut(s) 88, 223, 1867
EcoT14I CCWWGG 2 cut(s) 331, 702
EcoT38I GRGCYC 4 cut(s) 525, 1217, 2661, 2701
EgeI GGCGCC 2 cut(s) 697, 708
EheI GGCGCC 2 cut(s) 697, 708
ErhI CCWWGG 2 cut(s) 331, 702
Esp3I CGTCTC 1 cut(s) 1193
FaqI GGGAC 2 cut(s) 539, 2312
FauI CCCGC 3 cut(s) 564, 653, 997
FbaI TGATCA 1 cut(s) 384
FblI GTMKAC 2 cut(s) 939, 946
FokI GGATG 1 cut(s) 1235
FriOI GRGCYC 4 cut(s) 525, 1217, 2661, 2701
FseI GGCCGGCC 1 cut(s) 1282
FspBI CTAG 4 cut(s) 1131, 1241, 1940, 2117
GlaI GCGC 2 cut(s) 697, 708
GsuI CTGGAG 1 cut(s) 186
HaeII RGCGCY 2 cut(s) 699, 710
HaeIII GGCC 7 cut(s) 336, 376, 1148, 1278, 1282, 1980, 2748
HgaI GACGC 2 cut(s) 688, 1686
HhaI GCGC 2 cut(s) 698, 709
Hin1I GRCGYC 3 cut(s) 680, 696, 707
Hin6I GCGC 2 cut(s) 696, 707
HinP1I GCGC 2 cut(s) 696, 707
HincII GTYRAC 1 cut(s) 940
HindII GTYRAC 1 cut(s) 940
HindIII AAGCTT 1 cut(s) 1120
HphI GGTGA 5 cut(s) 253, 419, 541, 1175, 1191
Hpy166II GTNNAC 6 cut(s) 940, 947, 1537, 1960, 1997, 2632
Hpy8I GTNNAC 6 cut(s) 940, 947, 1537, 1960, 1997, 2632
Hpy99I CGWCG 6 cut(s) 682, 923, 941, 1300, 2673, 2676
HpyAV CCTTC 5 cut(s) 993, 1120, 1122, 1656, 2354
HpyCH4III ACNGT 8 cut(s) 130, 553, 613, 944, 1165, 1187, 1630, 2305
HpyCH4IV ACGT 1 cut(s) 1065
HpyF10VI GCNNNNNNNGC 8 cut(s) 354, 505, 629, 704, 760, 1464, 1778, 2760
HpySE526I ACGT 1 cut(s) 1065
Hsp92I GRCGYC 3 cut(s) 680, 696, 707
HspAI GCGC 2 cut(s) 696, 707
KasI GGCGCC 2 cut(s) 695, 706
KroI GCCGGC 1 cut(s) 1278
KroNI GCCGGC 1 cut(s) 1280
Ksp22I TGATCA 1 cut(s) 384
Lsp1109I GCAGC 9 cut(s) 635, 735, 910, 1277, 1581, 1768, 1771, 2383, 2747
LweI GCATC 8 cut(s) 1325, 1390, 1684, 1831, 2000, 2065, 2503, 2772
MaeI CTAG 4 cut(s) 1131, 1241, 1940, 2117
MaeII ACGT 1 cut(s) 1065
MbiI CCGCTC 3 cut(s) 432, 478, 632
MfeI CAATTG 2 cut(s) 767, 1302
MflI RGATCY 5 cut(s) 37, 205, 580, 1666, 2341
MhlI GDGCHC 7 cut(s) 525, 1098, 1111, 1217, 1539, 2661, 2701
Mly113I GGCGCC 2 cut(s) 696, 707
MlyI GAGTC 4 cut(s) 722, 1216, 1955, 2128
MmeI TCCRAC 2 cut(s) 860, 2726
MroNI GCCGGC 1 cut(s) 1278
MroXI GAANNNNTTC 3 cut(s) 1443, 1971, 2118
MseI TTAA 3 cut(s) 156, 189, 2439
MslI CAYNNNNRTG 1 cut(s) 138
MspA1I CMGCKG 2 cut(s) 648, 1151
MspR9I CCNGG 9 cut(s) 619, 636, 969, 996, 1340, 1341, 2015, 2016, 2684
MunI CAATTG 2 cut(s) 767, 1302
Mva1269I GAATGC 4 cut(s) 265, 1195, 1909, 2581
MvaI CCWGG 4 cut(s) 619, 636, 996, 2684
MwoI GCNNNNNNNGC 8 cut(s) 354, 505, 629, 704, 760, 1464, 1778, 2760
NaeI GCCGGC 1 cut(s) 1280
NarI GGCGCC 2 cut(s) 696, 707
NciI CCSGG 5 cut(s) 969, 1340, 1341, 2015, 2016
NgoMIV GCCGGC 1 cut(s) 1278
NmeAIII GCCGAG 3 cut(s) 879, 2720, 2774
NmuCI GTSAC 6 cut(s) 407, 547, 1009, 1165, 1235, 2738
NspI RCATGY 3 cut(s) 735, 1601, 2276
PaqCI CACCTGC 1 cut(s) 1210
PciI ACATGT 2 cut(s) 731, 2272
PcsI WCGNNNNNNNCGW 1 cut(s) 1098
PctI GAATGC 4 cut(s) 265, 1195, 1909, 2581
PdiI GCCGGC 1 cut(s) 1280
PdmI GAANNNNTTC 3 cut(s) 1443, 1971, 2118
PfeI GAWTC 6 cut(s) 537, 1483, 1619, 1990, 2158, 2294
PflFI GACNNNGTC 1 cut(s) 969
PfoI TCCNGGA 1 cut(s) 634
PinAI ACCGGT 1 cut(s) 544
PleI GAGTC 4 cut(s) 721, 1216, 1955, 2128
PluTI GGCGCC 2 cut(s) 699, 710
PpsI GAGTC 4 cut(s) 721, 1216, 1955, 2128
Ppu21I YACGTR 1 cut(s) 1066
PpuMI RGGWCCY 1 cut(s) 1135
PscI ACATGT 2 cut(s) 731, 2272
PshBI ATTAAT 2 cut(s) 156, 189
Psp124BI GAGCTC 3 cut(s) 1217, 2661, 2701
Psp5II RGGWCCY 1 cut(s) 1135
Psp6I CCWGG 4 cut(s) 617, 634, 994, 2682
PspEI GGTNACC 2 cut(s) 407, 547
PspGI CCWGG 4 cut(s) 617, 634, 994, 2682
PspPI GGNCC 6 cut(s) 316, 638, 1040, 1135, 1979, 2632
PspPPI RGGWCCY 1 cut(s) 1135
PsuI RGATCY 5 cut(s) 37, 205, 580, 1666, 2341
PsyI GACNNNGTC 1 cut(s) 969
RigI GGCCGGCC 1 cut(s) 1282
RsaI GTAC 4 cut(s) 1659, 1998, 2213, 2334
RsaNI GTAC 4 cut(s) 1658, 1997, 2212, 2333
RseI CAYNNNNRTG 1 cut(s) 138
SacI GAGCTC 3 cut(s) 1217, 2661, 2701
SalI GTCGAC 1 cut(s) 938
SaqAI TTAA 3 cut(s) 156, 189, 2439
Sau96I GGNCC 6 cut(s) 316, 638, 1040, 1135, 1979, 2632
SchI GAGTC 4 cut(s) 722, 1216, 1955, 2128
ScrFI CCNGG 9 cut(s) 619, 636, 969, 996, 1340, 1341, 2015, 2016, 2684
SduI GDGCHC 7 cut(s) 525, 1098, 1111, 1217, 1539, 2661, 2701
SfaNI GCATC 8 cut(s) 1325, 1390, 1684, 1831, 2000, 2065, 2503, 2772
SfcI CTRYAG 1 cut(s) 943
SfoI GGCGCC 2 cut(s) 697, 708
SinI GGWCC 5 cut(s) 316, 638, 1040, 1135, 2632
SmaI CCCGGG 2 cut(s) 1341, 2016
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 5 cut(s) 311, 1190, 1586, 2261, 2639
SmoI CTYRAG 5 cut(s) 311, 1190, 1586, 2261, 2639
SnaBI TACGTA 1 cut(s) 1066
SpeI ACTAGT 1 cut(s) 2116
SspDI GGCGCC 2 cut(s) 695, 706
SspI AATATT 3 cut(s) 1546, 1970, 2221
SspMI CTAG 4 cut(s) 1131, 1241, 1940, 2117
SstI GAGCTC 3 cut(s) 1217, 2661, 2701
StyD4I CCNGG 9 cut(s) 617, 634, 967, 994, 1338, 1339, 2013, 2014, 2682
StyI CCWWGG 2 cut(s) 331, 702
TaaI ACNGT 8 cut(s) 130, 553, 613, 944, 1165, 1187, 1630, 2305
TaiI ACGT 1 cut(s) 1068
TaqI TCGA 9 cut(s) 677, 788, 884, 939, 983, 1333, 1926, 2008, 2776
TatI WGTACW 4 cut(s) 1657, 1996, 2211, 2332
TauI GCSGC 5 cut(s) 376, 475, 478, 754, 1151
TfiI GAWTC 6 cut(s) 537, 1483, 1619, 1990, 2158, 2294
Tru1I TTAA 3 cut(s) 156, 189, 2439
Tru9I TTAA 3 cut(s) 156, 189, 2439
TscAI CASTG 5 cut(s) 724, 1234, 1420, 1840, 2095
TseFI GTSAC 6 cut(s) 407, 547, 1009, 1165, 1235, 2738
TseI GCWGC 9 cut(s) 648, 723, 923, 1265, 1594, 1781, 1784, 2396, 2760
Tsp45I GTSAC 6 cut(s) 407, 547, 1009, 1165, 1235, 2738
TspGWI ACGGA 4 cut(s) 1349, 2024, 2657, 2757
TspMI CCCGGG 2 cut(s) 1339, 2014
TspRI CASTG 5 cut(s) 724, 1234, 1420, 1840, 2095
Tth111I GACNNNGTC 1 cut(s) 969
VneI GTGCAC 1 cut(s) 1535
VpaK11BI GGWCC 5 cut(s) 316, 638, 1040, 1135, 2632
VspI ATTAAT 2 cut(s) 156, 189
XagI CCTNNNNNAGG 1 cut(s) 1142
XapI RAATTY 7 cut(s) 148, 180, 1766, 1824, 2149, 2441, 2496
XceI RCATGY 3 cut(s) 735, 1601, 2276
XmaI CCCGGG 2 cut(s) 1339, 2014
XmiI GTMKAC 2 cut(s) 939, 946
XmnI GAANNNNTTC 3 cut(s) 1443, 1971, 2118
XspI CTAG 4 cut(s) 1131, 1241, 1940, 2117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.