Rorug03G0029800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000079
Physical Location & Seq
Reverse (-)
2374774 .. 2378069
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0029800.1

Sequence Viewer

Length: 1278 bp
ATGGATAGGGTGTTCTCTTCCATGGGTGAAATGTCAGACCATCTCTGGTCTTCTTCTTCTTCTGCACCAGTACCACCTGGAACTAATGTGAATGAAGATGAAGATGAGCTTTCCAAAATGAACAGGAGCGCTTCAGAGTGGGCCTTCCAGCGTTTTCTCCAACAAGAAGCCTCTGTTTCACCTTCATCTTCCTCACAAGCTCAAAATGATGTTGAAGAAACCAAGGTCAATGCAACAAGTATGGCCTTACCAAATGGGCCAAACCCCACAAACACTAACAGCAGTGCGGCGCCGTTTAAGGCTCCTAATGTTCCTGTTGATTCTGAGGAGTACCAGGCCTTCCTCAAGACCAAGCTCGATCTGGCTTGTGCTGCTGTGGCCTTGTCTCGTGTAAAGGGATCTTTAGTGAAAGCTCAAGATTCTGCTTCTTTAGCTGACAGTGGGCAACAGGCTTCCGATGCTTTGCAACTGGGATCTCAAGCCCCCCTTGAAGGAGCTGGGAATGATTTATGCAGGTCATATGATAAGAATGCTACTGCACCACTTGGAATTCCTTTATTGCCAACGATACAAAGTAGATCTGGGGCTTCAATAAGGCAAGCAACAAGTGGATCATCAAGAGAACTCTCAGATTATGAGGAAGTTGAAGGAGAAACTGCAATGACTGAAAATATGGACCCTACTGATGTGAAACGTGTGAGGAGAATGCTCTCTAATAGAGAATCAGCTAGACGCTCAAGAAGAAGAAAGCAGGCCCATTTGACTGAGCTTGAGACACAGGCATCTCAATTAAGAGTTGAGAACTCCTCTTTATTGAAGCGTCTGACTGATATAAACCAGAAGTACAATGAAGCATCTGTTGACAACAGAGTTTTGAGAGCTGATATTGAAACATTGAGAGCAAAGGTAAAGATGGCTGAGGAGACGGTGAAAAGACTAACCGGATCAAACTCTTTGTATACTATGTCAGATGTGTCCTCAATCAGCATGGCACCATTTGATGGAAGCCCTTCAGAAACATCAGCAGATGCTGCTGTTCCCGTGCAAGATGACCCAAACCATCACTATTTCCAACCTGCTTCCACTAACTCTATGCCAACTGACTTCAGAGGCAACAATGATTTGGCAGATAATACCCCTTCAGTTGAAAATGCGCAGCAGACTTCTGCAGCAACATCAACAGAAGTGGTGGGAAACAAGATGGGACGAACACTTTCCTTACCGCGAGTTGCTAGCTTAGAGCATCTCCAGAAGCGGATCCGCGGTGGAGAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

425

Amino Acids

46.01

Weight (kDa)

5.17

Isoelectric Point (pI)

61.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 229 - 277 7.3e-07 Basic region leucine zipper
bZIP_1 PF00170 230 - 283 9.5e-13 bZIP transcription factor
bZIP_C PF12498 298 - 423 9.7e-40 Basic leucine-zipper C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1155
Acc36I ACCTGC 2 cut(s) 504, 1084
AccB1I GGYRCC 2 cut(s) 289, 991
AccB7I CCANNNNNTGG 1 cut(s) 1001
AccI GTMKAC 1 cut(s) 959
AccII CGCG 2 cut(s) 1225, 1263
AciI CCGC 5 cut(s) 287, 1223, 1255, 1261, 1263
AclWI GGATC 6 cut(s) 406, 481, 619, 952, 1252, 1265
AcsI RAATTY 1 cut(s) 549
AcuI CTGAAG 4 cut(s) 117, 996, 1090, 1125
AcyI GRCGYC 1 cut(s) 290
AfaI GTAC 3 cut(s) 72, 332, 845
AfeI AGCGCT 1 cut(s) 130
AfiI CCNNNNNNNGG 2 cut(s) 491, 1001
AflIII ACRYGT 1 cut(s) 694
AgsI TTSAA 7 cut(s) 215, 491, 591, 647, 817, 890, 1148
AjnI CCWGG 2 cut(s) 76, 333
AloI GAACNNNNNNTCC 1 cut(s) 28
Alw26I GTCTC 3 cut(s) 390, 767, 917
AlwI GGATC 6 cut(s) 406, 481, 619, 952, 1252, 1265
AlwNI CAGNNNCTG 1 cut(s) 1031
Aor51HI AGCGCT 1 cut(s) 130
AoxI GGCC 6 cut(s) 141, 243, 257, 336, 378, 753
ApeKI GCWGC 4 cut(s) 371, 1031, 1156, 1169
ApoI RAATTY 1 cut(s) 549
Asp700I GAANNNNTTC 2 cut(s) 1009, 1213
AspLEI GCGC 3 cut(s) 131, 292, 1156
AspS9I GGNCC 4 cut(s) 141, 257, 676, 754
AsuHPI GGTGA 3 cut(s) 38, 171, 940
AsuNHI GCTAGC 1 cut(s) 1232
AvaII GGWCC 1 cut(s) 676
BamHI GGATCC 1 cut(s) 1257
BanI GGYRCC 2 cut(s) 289, 991
BarI GAAGNNNNNNTAC 2 cut(s) 323, 355
BauI CACGAG 1 cut(s) 387
BbsI GAAGAC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 918
BbvI GCAGC 4 cut(s) 358, 1018, 1168, 1181
BccI CCATC 5 cut(s) 48, 907, 995, 1068, 1195
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 2 cut(s) 78, 335
BcoDI GTCTC 3 cut(s) 390, 767, 917
BfaI CTAG 2 cut(s) 729, 1233
BfmI CTRYAG 1 cut(s) 1167
BfoI RGCGCY 2 cut(s) 132, 293
BfuAI ACCTGC 2 cut(s) 504, 1084
BglII AGATCT 1 cut(s) 578
BisI GCNGC 5 cut(s) 288, 372, 1032, 1157, 1170
BlsI GCNGC 5 cut(s) 289, 373, 1033, 1158, 1171
Bme1390I CCNGG 2 cut(s) 78, 335
Bme18I GGWCC 1 cut(s) 676
BmgT120I GGNCC 4 cut(s) 141, 257, 676, 754
BmiI GGNNCC 5 cut(s) 291, 303, 678, 993, 1259
BmrFI CCNGG 2 cut(s) 78, 335
BmrI ACTGGG 1 cut(s) 479
BmsI GCATC 5 cut(s) 448, 791, 863, 1018, 1252
BmtI GCTAGC 1 cut(s) 1236
BmuI ACTGGG 1 cut(s) 479
BpiI GAAGAC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 791, 823
BpmI CTGGAG 1 cut(s) 1232
Bpu10I CCTNAGC 1 cut(s) 918
BpuEI CTTGAG 5 cut(s) 329, 399, 462, 721, 791
BsaHI GRCGYC 1 cut(s) 290
BsaJI CCNNGG 3 cut(s) 21, 222, 1261
BsaWI WCCGGW 1 cut(s) 941
Bsc4I CCNNNNNNNGG 2 cut(s) 491, 1001
Bse1I ACTGG 2 cut(s) 68, 474
Bse3DI GCAATG 1 cut(s) 666
BseBI CCWGG 2 cut(s) 78, 335
BseDI CCNNGG 3 cut(s) 21, 222, 1261
BseLI CCNNNNNNNGG 2 cut(s) 491, 1001
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 4 cut(s) 315, 642, 756, 909
BseNI ACTGG 2 cut(s) 68, 474
BseRI GAGGAG 4 cut(s) 341, 715, 796, 935
BseXI GCAGC 4 cut(s) 358, 1018, 1168, 1181
BseYI CCCAGC 1 cut(s) 497
BsgI GTGCAG 2 cut(s) 48, 522
Bsh1236I CGCG 2 cut(s) 1225, 1263
BshFI GGCC 6 cut(s) 143, 245, 259, 338, 380, 755
BshNI GGYRCC 2 cut(s) 289, 991
BsiSI CCGG 1 cut(s) 942
BslFI GGGAC 1 cut(s) 1218
BslI CCNNNNNNNGG 2 cut(s) 491, 1001
BsmAI GTCTC 3 cut(s) 390, 767, 917
BsmBI CGTCTC 1 cut(s) 917
BsmFI GGGAC 1 cut(s) 1218
BsmI GAATGC 2 cut(s) 535, 711
BsnI GGCC 6 cut(s) 143, 245, 259, 338, 380, 755
Bsp143I GATC 7 cut(s) 358, 398, 473, 578, 611, 944, 1257
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 5 cut(s) 287, 1223, 1255, 1261, 1263
BspANI GGCC 6 cut(s) 143, 245, 259, 338, 380, 755
BspCNI CTCAG 4 cut(s) 316, 641, 757, 910
BspFNI CGCG 2 cut(s) 1225, 1263
BspLI GGNNCC 5 cut(s) 291, 303, 678, 993, 1259
BspMAI CTGCAG 1 cut(s) 1171
BspMI ACCTGC 2 cut(s) 504, 1084
BspOI GCTAGC 1 cut(s) 1236
BspPI GGATC 6 cut(s) 406, 481, 619, 952, 1252, 1265
BspT107I GGYRCC 2 cut(s) 289, 991
BsrDI GCAATG 1 cut(s) 666
BsrI ACTGG 2 cut(s) 68, 474
BssECI CCNNGG 3 cut(s) 21, 222, 1261
BssMI GATC 7 cut(s) 358, 398, 473, 578, 611, 944, 1257
BssNAI GTATAC 1 cut(s) 960
BssNI GRCGYC 1 cut(s) 290
BssSI CACGAG 1 cut(s) 387
BssT1I CCWWGG 2 cut(s) 21, 222
Bst1107I GTATAC 1 cut(s) 960
Bst2BI CACGAG 1 cut(s) 387
Bst2UI CCWGG 2 cut(s) 78, 335
Bst4CI ACNGT 2 cut(s) 440, 928
Bst6I CTCTTC 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 290
BstAPI GCANNNNNTGC 1 cut(s) 1031
BstC8I GCNNGC 3 cut(s) 600, 753, 1234
BstDEI CTNAG 5 cut(s) 324, 628, 765, 918, 1237
BstDSI CCRYGG 2 cut(s) 21, 1261
BstFNI CGCG 2 cut(s) 1225, 1263
BstH2I RGCGCY 2 cut(s) 132, 293
BstHHI GCGC 3 cut(s) 131, 292, 1156
BstKTI GATC 7 cut(s) 361, 401, 476, 581, 614, 947, 1260
BstMAI GTCTC 3 cut(s) 390, 767, 917
BstMBI GATC 7 cut(s) 358, 398, 473, 578, 611, 944, 1257
BstMWI GCNNNNNNNGC 5 cut(s) 371, 377, 431, 458, 1031
BstNI CCWGG 2 cut(s) 78, 335
BstSCI CCNGG 2 cut(s) 76, 333
BstSFI CTRYAG 1 cut(s) 1167
BstUI CGCG 2 cut(s) 1225, 1263
BstV1I GCAGC 4 cut(s) 358, 1018, 1168, 1181
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 4 cut(s) 398, 473, 578, 1257
BstYI RGATCY 4 cut(s) 398, 473, 578, 1257
BstZ17I GTATAC 1 cut(s) 960
BsuRI GGCC 6 cut(s) 143, 245, 259, 338, 380, 755
BtgI CCRYGG 2 cut(s) 21, 1261
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 2 cut(s) 289, 445
BveI ACCTGC 2 cut(s) 504, 1084
Cac8I GCNNGC 3 cut(s) 600, 753, 1234
CaiI CAGNNNCTG 1 cut(s) 1031
CfoI GCGC 3 cut(s) 131, 292, 1156
Cfr13I GGNCC 4 cut(s) 141, 257, 676, 754
Cfr42I CCGCGG 1 cut(s) 1264
CseI GACGC 2 cut(s) 741, 809
Csp6I GTAC 3 cut(s) 71, 331, 844
CspCI CAANNNNNGTGG 2 cut(s) 1167, 1202
CviAII CATG 2 cut(s) 22, 988
CviQI GTAC 3 cut(s) 71, 331, 844
DdeI CTNAG 5 cut(s) 324, 628, 765, 918, 1237
DinI GGCGCC 1 cut(s) 291
DpnI GATC 7 cut(s) 360, 400, 475, 580, 613, 946, 1259
DpnII GATC 7 cut(s) 358, 398, 473, 578, 611, 944, 1257
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco130I CCWWGG 2 cut(s) 21, 222
Eco147I AGGCCT 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 676
Eco47III AGCGCT 1 cut(s) 130
Eco57I CTGAAG 4 cut(s) 117, 996, 1090, 1125
EcoRI GAATTC 1 cut(s) 549
EcoRII CCWGG 2 cut(s) 76, 333
EcoT14I CCWWGG 2 cut(s) 21, 222
EgeI GGCGCC 1 cut(s) 291
EheI GGCGCC 1 cut(s) 291
ErhI CCWWGG 2 cut(s) 21, 222
Esp3I CGTCTC 1 cut(s) 917
FaeI CATG 2 cut(s) 25, 991
FalI AAGNNNNNCTT 4 cut(s) 93, 125, 471, 503
FaqI GGGAC 1 cut(s) 1218
FatI CATG 2 cut(s) 21, 987
FauNDI CATATG 1 cut(s) 520
FblI GTMKAC 1 cut(s) 959
Fnu4HI GCNGC 5 cut(s) 288, 372, 1032, 1157, 1170
Fsp4HI GCNGC 5 cut(s) 288, 372, 1032, 1157, 1170
FspBI CTAG 2 cut(s) 729, 1233
FspI TGCGCA 1 cut(s) 1155
GlaI GCGC 3 cut(s) 130, 291, 1155
GluI GCNGC 5 cut(s) 288, 372, 1032, 1157, 1170
GsaI CCCAGC 1 cut(s) 501
GsuI CTGGAG 1 cut(s) 1232
HaeII RGCGCY 2 cut(s) 132, 293
HaeIII GGCC 6 cut(s) 143, 245, 259, 338, 380, 755
HapII CCGG 1 cut(s) 942
HgaI GACGC 2 cut(s) 741, 809
HhaI GCGC 3 cut(s) 131, 292, 1156
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 2 cut(s) 25, 991
Hin6I GCGC 3 cut(s) 129, 290, 1154
HinP1I GCGC 3 cut(s) 129, 290, 1154
HincII GTYRAC 1 cut(s) 862
HindII GTYRAC 1 cut(s) 862
HinfI GANTC 3 cut(s) 320, 419, 722
HpaII CCGG 1 cut(s) 942
HphI GGTGA 3 cut(s) 38, 171, 940
Hpy166II GTNNAC 2 cut(s) 862, 960
Hpy188I TCNGA 9 cut(s) 37, 136, 325, 457, 631, 825, 970, 1015, 1109
Hpy188III TCNNGA 5 cut(s) 346, 416, 618, 738, 1249
Hpy8I GTNNAC 2 cut(s) 862, 960
HpyAV CCTTC 7 cut(s) 154, 192, 349, 485, 641, 1020, 1149
HpyCH4III ACNGT 2 cut(s) 440, 928
HpyCH4IV ACGT 1 cut(s) 694
HpyCH4V TGCA 8 cut(s) 65, 233, 466, 513, 539, 659, 1045, 1169
HpyF10VI GCNNNNNNNGC 5 cut(s) 371, 377, 431, 458, 1031
HpyF3I CTNAG 5 cut(s) 324, 628, 765, 918, 1237
HpySE526I ACGT 1 cut(s) 694
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 2 cut(s) 25, 991
HspAI GCGC 3 cut(s) 129, 290, 1154
KasI GGCGCC 1 cut(s) 289
KspI CCGCGG 1 cut(s) 1264
Kzo9I GATC 7 cut(s) 358, 398, 473, 578, 611, 944, 1257
LmnI GCTCC 3 cut(s) 126, 307, 494
Lsp1109I GCAGC 4 cut(s) 358, 1018, 1168, 1181
LweI GCATC 5 cut(s) 448, 791, 863, 1018, 1252
MaeI CTAG 2 cut(s) 729, 1233
MaeII ACGT 1 cut(s) 694
MalI GATC 7 cut(s) 360, 400, 475, 580, 613, 946, 1259
MboI GATC 7 cut(s) 358, 398, 473, 578, 611, 944, 1257
MflI RGATCY 4 cut(s) 398, 473, 578, 1257
MluCI AATT 2 cut(s) 549, 788
Mly113I GGCGCC 1 cut(s) 290
MmeI TCCRAC 2 cut(s) 184, 1096
MroXI GAANNNNTTC 2 cut(s) 1009, 1213
MseI TTAA 2 cut(s) 297, 791
MspA1I CMGCKG 1 cut(s) 1263
MspI CCGG 1 cut(s) 942
MspR9I CCNGG 2 cut(s) 78, 335
Mva1269I GAATGC 2 cut(s) 535, 711
MvaI CCWGG 2 cut(s) 78, 335
MvnI CGCG 2 cut(s) 1225, 1263
MwoI GCNNNNNNNGC 5 cut(s) 371, 377, 431, 458, 1031
NarI GGCGCC 1 cut(s) 290
NcoI CCATGG 1 cut(s) 21
NdeI CATATG 1 cut(s) 520
NdeII GATC 7 cut(s) 358, 398, 473, 578, 611, 944, 1257
NheI GCTAGC 1 cut(s) 1232
NlaIII CATG 2 cut(s) 25, 991
NlaIV GGNNCC 5 cut(s) 291, 303, 678, 993, 1259
NsbI TGCGCA 1 cut(s) 1155
PceI AGGCCT 1 cut(s) 338
PctI GAATGC 2 cut(s) 535, 711
PdmI GAANNNNTTC 2 cut(s) 1009, 1213
PfeI GAWTC 3 cut(s) 320, 419, 722
PflMI CCANNNNNTGG 1 cut(s) 1001
PkrI GCNGC 5 cut(s) 289, 373, 1033, 1158, 1171
PluTI GGCGCC 1 cut(s) 293
Psp6I CCWGG 2 cut(s) 76, 333
PspFI CCCAGC 1 cut(s) 497
PspGI CCWGG 2 cut(s) 76, 333
PspN4I GGNNCC 5 cut(s) 291, 303, 678, 993, 1259
PspPI GGNCC 4 cut(s) 141, 257, 676, 754
PstI CTGCAG 1 cut(s) 1171
PstNI CAGNNNCTG 1 cut(s) 1031
PsuI RGATCY 4 cut(s) 398, 473, 578, 1257
RsaI GTAC 3 cut(s) 72, 332, 845
RsaNI GTAC 3 cut(s) 71, 331, 844
SacII CCGCGG 1 cut(s) 1264
SaqAI TTAA 2 cut(s) 297, 791
SatI GCNGC 5 cut(s) 288, 372, 1032, 1157, 1170
Sau3AI GATC 7 cut(s) 358, 398, 473, 578, 611, 944, 1257
Sau96I GGNCC 4 cut(s) 141, 257, 676, 754
ScrFI CCNGG 2 cut(s) 78, 335
SfaNI GCATC 5 cut(s) 448, 791, 863, 1018, 1252
SfcI CTRYAG 1 cut(s) 1167
SfoI GGCGCC 1 cut(s) 291
Sfr303I CCGCGG 1 cut(s) 1264
SgrBI CCGCGG 1 cut(s) 1264
SinI GGWCC 1 cut(s) 676
SmlI CTYRAG 5 cut(s) 344, 414, 477, 736, 770
SmoI CTYRAG 5 cut(s) 344, 414, 477, 736, 770
Sse9I AATT 2 cut(s) 549, 788
SseBI AGGCCT 1 cut(s) 338
SsiI CCGC 5 cut(s) 287, 1223, 1255, 1261, 1263
SspDI GGCGCC 1 cut(s) 289
SspMI CTAG 2 cut(s) 729, 1233
StuI AGGCCT 1 cut(s) 338
StyD4I CCNGG 2 cut(s) 76, 333
StyI CCWWGG 2 cut(s) 21, 222
TaaI ACNGT 2 cut(s) 440, 928
TaiI ACGT 1 cut(s) 697
TaqI TCGA 1 cut(s) 357
TasI AATT 2 cut(s) 549, 788
TatI WGTACW 1 cut(s) 843
TauI GCSGC 1 cut(s) 290
TfiI GAWTC 3 cut(s) 320, 419, 722
Tru1I TTAA 2 cut(s) 297, 791
Tru9I TTAA 2 cut(s) 297, 791
TscAI CASTG 2 cut(s) 289, 445
TseI GCWGC 4 cut(s) 371, 1031, 1156, 1169
TspDTI ATGAA 5 cut(s) 108, 114, 134, 174, 864
TspRI CASTG 2 cut(s) 289, 445
Van91I CCANNNNNTGG 1 cut(s) 1001
VpaK11BI GGWCC 1 cut(s) 676
XapI RAATTY 1 cut(s) 549
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
XmiI GTMKAC 1 cut(s) 959
XmnI GAANNNNTTC 2 cut(s) 1009, 1213
XspI CTAG 2 cut(s) 729, 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.