Rorug07G0044200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000079
Physical Location & Seq
Forward (+)
3216315 .. 3220958
4644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0044200.1

Sequence Viewer

Length: 1608 bp
ATGGATATGGATCCTAAGGAGCTCAATTTGAACAAAGGACCTGAAGGCTGCGGCGGCGCCGGCGGTGGTGAGGGGTTTATAGATAGGAGCAAGGTGAGGATTTTGCTCTGCGATAACGACGAGTCCAGCTCCGAAGAAGTTCTCAGGCTTCTTTTGAAATGCTCTTATCAAGTCACTTCGGTCAAGTCTCCTCGGCAGGTGATCGATGCATTGAATGCAGAGGGACCTGATATTGATATCATACTTGCCGAAGTCGACCTTCCAATGAGAAAAGGAACCAGAATGTTGAAGTACATCACACGGCATAGAGAGTTGAGGCGCATTCCTGTGATCATGATGTCGGCACAGGATGAGGTCTCTACTGTTGTCAAGTGCCTGAGGCTTGGAGCGGCAGACTATCTTGTAAAGCCTTTACGAACTAATGAGCTTTTAAACTTGTGGACACATATGTGGAGAAGAAGACACATGCTTGGACTTGCAGAGAAGAACGTGTTTAGTTATGACTTTGATACAGTTGTATCAGATCCTAGTGATCCTACTACAAACTCATTCTCGGATGATACAGAAGAGAAGTCTCAGAAGAGTGCCAATCCAGAGATACCTGTTCCTGCTGCCGCGGAGCCTCCACTGGATGATCAATTAGAGTTTCAGAGTGATGTTCCAGAAATATGTGACCGCCAAACTGGAAAATTTTCATCTGGCCCAAAAAAGAGCGAACTCAAGATTGGGGGGTCATCTGCCTTCTTTACCTATGTCAAATCAAGCACAATTGAAAACAACTCCCAAGTCCTTACAAAGGATAATGGTGCTGAACGGTCAAGAGTGGAAGGGAAACATCCAGCATGTAGTCAACAAATGGTTGATGAGTCTCTCCAAGTAGATGGAAATGGAGTAGCATGGGAAAGCTATTCACAAGAAGATGACTTTCCAATTAGTAATAGTATCCCAGATTCTCTTTCATTGGAGAGGTCTTGCACCCCACCTGGTTCAATGGAACTTCAGCATCAGAAGAATAATGCGGAAGACAGATCCTCTCAGGTGCCTGCGCATCCTAGAAATGAACCTCAACACGATGTTTCTAGATTGCCTGCCCATGCTTCGTATCCATACTATATGCCGGGGGTTGTCAATCAGGTTATGGGGTCATCATCAACTCAAGTGTATCAAAAGAATCTGCACGACATGCCAAATCATGCCGCAGCAGCAATTATGCAACATTACAGTCATCTTCCACACTGCCCTCCACATGTTAATGGGATGACTTCATTATCCTACTATCCGCTTAGTATATGCTTACAACCTGGTCAGATGCCTAACAATCATTCATGGCCATCCCTTGGAAGCTCATCTGCCAGTGAAGTGAAATTAAGTAAGGTTGACAGAAGAGAGGCAGCATTGATTAAATTTAGGCAGAAAAGAAAGGAGCGTTGCTTTGATAAAAAGATTAGGTATGTTAATCGAAAAAGACTTGCTGAAAGGAGGCCTCGTGTACGGGGACAATTTGTGAGGAAGGTAAATGGTGTAGATGTTGATCTCAATGGGCAACCTGCTTCTCTTGATGATGACGAGGATGATGAGGATGAGAAGGATGTTGAGGAGCTTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

535

Amino Acids

59.91

Weight (kDa)

5.68

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 34 - 145 2.7e-18 Response regulator receiver domain
CCT PF06203 462 - 504 3e-15 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 187
Acc16I TGCGCA 1 cut(s) 1047
Acc36I ACCTGC 2 cut(s) 187, 1555
AccB1I GGYRCC 2 cut(s) 56, 1039
AccB7I CCANNNNNTGG 1 cut(s) 1337
AccBSI CCGCTC 1 cut(s) 389
AccI GTMKAC 1 cut(s) 255
AccII CGCG 1 cut(s) 617
AclWI GGATC 5 cut(s) 5, 18, 518, 527, 1023
AcoI YGGCCR 1 cut(s) 1328
AcsI RAATTY 2 cut(s) 689, 1403
AcuI CTGAAG 2 cut(s) 63, 983
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 2 cut(s) 293, 1491
AfiI CCNNNNNNNGG 2 cut(s) 796, 1337
AflIII ACRYGT 2 cut(s) 489, 1246
AgsI TTSAA 6 cut(s) 31, 157, 214, 289, 773, 990
AjnI CCWGG 2 cut(s) 982, 1300
AjuI GAANNNNNNNTTGG 2 cut(s) 708, 740
AleI CACNNNNGTG 1 cut(s) 448
AluBI AGCT 6 cut(s) 22, 129, 427, 906, 1344, 1600
AluI AGCT 6 cut(s) 22, 129, 427, 906, 1344, 1600
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 4 cut(s) 192, 361, 579, 873
AlwI GGATC 5 cut(s) 5, 18, 518, 527, 1023
AoxI GGCC 3 cut(s) 700, 1328, 1481
ApeKI GCWGC 5 cut(s) 48, 611, 1199, 1202, 1391
ApoI RAATTY 2 cut(s) 689, 1403
Asp700I GAANNNNTTC 2 cut(s) 138, 691
AspLEI GCGC 3 cut(s) 59, 321, 1048
AspS9I GGNCC 3 cut(s) 38, 224, 701
AsuC2I CCSGG 1 cut(s) 1119
AsuHPI GGTGA 3 cut(s) 80, 106, 211
AvaII GGWCC 2 cut(s) 38, 224
AxyI CCTNAGG 2 cut(s) 15, 377
BaeI ACNNNNGTAYC 4 cut(s) 501, 501, 534, 534
BalI TGGCCA 1 cut(s) 1330
BamHI GGATCC 1 cut(s) 10
BanI GGYRCC 2 cut(s) 56, 1039
BanII GRGCYC 1 cut(s) 24
BauI CACGAG 1 cut(s) 1485
BbsI GAAGAC 2 cut(s) 466, 1029
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 5 cut(s) 35, 598, 1211, 1214, 1403
BccI CCATC 2 cut(s) 875, 1339
BceAI ACGGC 1 cut(s) 317
BciT130I CCWGG 2 cut(s) 984, 1302
BciVI GTATCC 2 cut(s) 953, 1113
BclI TGATCA 2 cut(s) 330, 634
BcnI CCSGG 1 cut(s) 1119
BcoDI GTCTC 4 cut(s) 192, 361, 579, 873
BfaI CTAG 3 cut(s) 528, 1053, 1080
BfoI RGCGCY 1 cut(s) 60
BfuAI ACCTGC 2 cut(s) 187, 1555
BfuI GTATCC 2 cut(s) 953, 1113
Bme1390I CCNGG 3 cut(s) 984, 1119, 1302
Bme18I GGWCC 2 cut(s) 38, 224
BmgT120I GGNCC 3 cut(s) 38, 224, 701
BmiI GGNNCC 6 cut(s) 12, 58, 225, 277, 621, 1041
BmrFI CCNGG 3 cut(s) 984, 1119, 1302
BmsI GCATC 4 cut(s) 196, 1012, 1057, 1299
BpiI GAAGAC 2 cut(s) 466, 1029
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BpuEI CTTGAG 2 cut(s) 704, 1140
BpuMI CCSGG 1 cut(s) 1119
Bsa29I ATCGAT 1 cut(s) 204
BsaBI GATNNNNATC 2 cut(s) 9, 1530
BsaHI GRCGYC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 361
BsaJI CCNNGG 4 cut(s) 191, 615, 1118, 1336
BsaXI ACNNNNNCTCC 3 cut(s) 1471, 1501, 1589
Bsc4I CCNNNNNNNGG 2 cut(s) 796, 1337
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 3 cut(s) 633, 688, 1353
Bse21I CCTNAGG 2 cut(s) 15, 377
Bse8I GATNNNNATC 2 cut(s) 9, 1530
BseBI CCWGG 2 cut(s) 984, 1302
BseCI ATCGAT 1 cut(s) 204
BseDI CCNNGG 4 cut(s) 191, 615, 1118, 1336
BseJI GATNNNNATC 2 cut(s) 9, 1530
BseLI CCNNNNNNNGG 2 cut(s) 796, 1337
BseMII CTCAG 4 cut(s) 157, 368, 590, 1049
BseNI ACTGG 3 cut(s) 633, 688, 1353
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 5 cut(s) 35, 598, 1211, 1214, 1403
BsgI GTGCAG 1 cut(s) 1160
Bsh1236I CGCG 1 cut(s) 617
BshFI GGCC 3 cut(s) 702, 1330, 1483
BshNI GGYRCC 2 cut(s) 56, 1039
BshVI ATCGAT 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 2 cut(s) 60, 1118
BslFI GGGAC 2 cut(s) 237, 1509
BslI CCNNNNNNNGG 2 cut(s) 796, 1337
BsmAI GTCTC 4 cut(s) 192, 361, 579, 873
BsmFI GGGAC 2 cut(s) 237, 1509
BsmI GAATGC 2 cut(s) 220, 321
BsnI GGCC 3 cut(s) 702, 1330, 1483
Bso31I GGTCTC 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 8 cut(s) 10, 201, 330, 523, 532, 634, 1028, 1531
BspANI GGCC 3 cut(s) 702, 1330, 1483
BspCNI CTCAG 4 cut(s) 156, 369, 589, 1048
BspDI ATCGAT 1 cut(s) 204
BspFNI CGCG 1 cut(s) 617
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 6 cut(s) 12, 58, 225, 277, 621, 1041
BspMI ACCTGC 2 cut(s) 187, 1555
BspPI GGATC 5 cut(s) 5, 18, 518, 527, 1023
BspT107I GGYRCC 2 cut(s) 56, 1039
BspTNI GGTCTC 1 cut(s) 361
BsrBI CCGCTC 1 cut(s) 389
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 3 cut(s) 633, 688, 1353
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 4 cut(s) 191, 615, 1118, 1336
BssMI GATC 8 cut(s) 10, 201, 330, 523, 532, 634, 1028, 1531
BssNI GRCGYC 1 cut(s) 57
BssSI CACGAG 1 cut(s) 1485
BssT1I CCWWGG 1 cut(s) 1336
Bst2BI CACGAG 1 cut(s) 1485
Bst2UI CCWGG 2 cut(s) 984, 1302
Bst4CI ACNGT 4 cut(s) 364, 514, 816, 1223
Bst6I CTCTTC 3 cut(s) 561, 575, 1378
BstACI GRCGYC 1 cut(s) 57
BstAPI GCANNNNNTGC 2 cut(s) 215, 1183
BstC8I GCNNGC 4 cut(s) 61, 1044, 1089, 1602
BstDEI CTNAG 6 cut(s) 15, 143, 377, 576, 1035, 1283
BstDSI CCRYGG 1 cut(s) 615
BstENI CCTNNNNNAGG 1 cut(s) 794
BstFNI CGCG 1 cut(s) 617
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 3 cut(s) 59, 321, 1048
BstKTI GATC 8 cut(s) 13, 204, 333, 526, 535, 637, 1031, 1534
BstMAI GTCTC 4 cut(s) 192, 361, 579, 873
BstMBI GATC 8 cut(s) 10, 201, 330, 523, 532, 634, 1028, 1531
BstMWI GCNNNNNNNGC 5 cut(s) 54, 60, 215, 1183, 1202
BstNI CCWGG 2 cut(s) 984, 1302
BstNSI RCATGY 4 cut(s) 469, 846, 1186, 1250
BstSCI CCNGG 3 cut(s) 982, 1117, 1300
BstUI CGCG 1 cut(s) 617
BstV1I GCAGC 5 cut(s) 35, 598, 1211, 1214, 1403
BstV2I GAAGAC 2 cut(s) 466, 1029
BstX2I RGATCY 3 cut(s) 10, 523, 1028
BstXI CCANNNNNNTGG 1 cut(s) 881
BstYI RGATCY 3 cut(s) 10, 523, 1028
Bsu15I ATCGAT 1 cut(s) 204
Bsu36I CCTNAGG 2 cut(s) 15, 377
BsuI GTATCC 2 cut(s) 953, 1113
BsuRI GGCC 3 cut(s) 702, 1330, 1483
BsuTUI ATCGAT 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 615
BtsI GCAGTG 1 cut(s) 1234
BtsIMutI CAGTG 3 cut(s) 626, 1234, 1360
BveI ACCTGC 2 cut(s) 187, 1555
Cac8I GCNNGC 4 cut(s) 61, 1044, 1089, 1602
CciI TCATGA 1 cut(s) 333
CfoI GCGC 3 cut(s) 59, 321, 1048
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 3 cut(s) 38, 224, 701
Cfr42I CCGCGG 1 cut(s) 618
ClaI ATCGAT 1 cut(s) 204
CsiI ACCWGGT 2 cut(s) 982, 1300
Csp6I GTAC 2 cut(s) 292, 1490
CviAII CATG 9 cut(s) 334, 466, 843, 897, 1094, 1183, 1193, 1247, 1326
CviQI GTAC 2 cut(s) 292, 1490
DdeI CTNAG 6 cut(s) 15, 143, 377, 576, 1035, 1283
DinI GGCGCC 1 cut(s) 58
DpnI GATC 8 cut(s) 12, 203, 332, 525, 534, 636, 1030, 1533
DpnII GATC 8 cut(s) 10, 201, 330, 523, 532, 634, 1028, 1531
DraI TTTAAA 1 cut(s) 432
EaeI YGGCCR 1 cut(s) 1328
Eam1104I CTCTTC 3 cut(s) 561, 575, 1378
EarI CTCTTC 3 cut(s) 561, 575, 1378
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 1336
Eco147I AGGCCT 1 cut(s) 1483
Eco24I GRGCYC 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 361
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 2 cut(s) 38, 224
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 2 cut(s) 63, 983
Eco81I CCTNAGG 2 cut(s) 15, 377
EcoICRI GAGCTC 1 cut(s) 22
EcoNI CCTNNNNNAGG 1 cut(s) 794
EcoO109I RGGNCCY 2 cut(s) 38, 224
EcoRII CCWGG 2 cut(s) 982, 1300
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 1336
EcoT22I ATGCAT 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 24
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 1336
FaeI CATG 9 cut(s) 337, 469, 846, 900, 1097, 1186, 1196, 1250, 1329
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FaqI GGGAC 2 cut(s) 237, 1509
FatI CATG 9 cut(s) 333, 465, 842, 896, 1093, 1182, 1192, 1246, 1325
FauNDI CATATG 1 cut(s) 447
FbaI TGATCA 2 cut(s) 330, 634
FblI GTMKAC 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 24
FspBI CTAG 3 cut(s) 528, 1053, 1080
FspI TGCGCA 1 cut(s) 1047
GlaI GCGC 3 cut(s) 58, 320, 1047
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 3 cut(s) 702, 1330, 1483
HapII CCGG 2 cut(s) 60, 1118
HhaI GCGC 3 cut(s) 59, 321, 1048
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 9 cut(s) 337, 469, 846, 900, 1097, 1186, 1196, 1250, 1329
Hin6I GCGC 3 cut(s) 57, 319, 1046
HinP1I GCGC 3 cut(s) 57, 319, 1046
HincII GTYRAC 3 cut(s) 256, 851, 1378
HindII GTYRAC 3 cut(s) 256, 851, 1378
HinfI GANTC 4 cut(s) 122, 866, 950, 1171
HpaII CCGG 2 cut(s) 60, 1118
HphI GGTGA 3 cut(s) 80, 106, 211
Hpy166II GTNNAC 5 cut(s) 256, 441, 851, 1378, 1490
Hpy188I TCNGA 7 cut(s) 133, 523, 556, 579, 651, 1008, 1308
Hpy188III TCNNGA 7 cut(s) 334, 593, 662, 721, 819, 1080, 1556
Hpy8I GTNNAC 5 cut(s) 256, 441, 851, 1378, 1490
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 6 cut(s) 38, 269, 751, 821, 1504, 1579
HpyCH4III ACNGT 4 cut(s) 364, 514, 816, 1223
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 6 cut(s) 209, 218, 479, 975, 1177, 1213
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 60, 215, 1183, 1202
HpyF3I CTNAG 6 cut(s) 15, 143, 377, 576, 1035, 1283
HpySE526I ACGT 1 cut(s) 489
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 9 cut(s) 337, 469, 846, 900, 1097, 1186, 1196, 1250, 1329
HspAI GCGC 3 cut(s) 57, 319, 1046
KasI GGCGCC 1 cut(s) 56
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Ksp22I TGATCA 2 cut(s) 330, 634
KspI CCGCGG 1 cut(s) 618
Kzo9I GATC 8 cut(s) 10, 201, 330, 523, 532, 634, 1028, 1531
LmnI GCTCC 7 cut(s) 19, 87, 134, 386, 619, 1423, 1597
Lsp1109I GCAGC 5 cut(s) 35, 598, 1211, 1214, 1403
LweI GCATC 4 cut(s) 196, 1012, 1057, 1299
MabI ACCWGGT 2 cut(s) 982, 1300
MaeI CTAG 3 cut(s) 528, 1053, 1080
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 2 cut(s) 172, 671
MalI GATC 8 cut(s) 12, 203, 332, 525, 534, 636, 1030, 1533
MbiI CCGCTC 1 cut(s) 389
MboI GATC 8 cut(s) 10, 201, 330, 523, 532, 634, 1028, 1531
MfeI CAATTG 1 cut(s) 768
MflI RGATCY 3 cut(s) 10, 523, 1028
MhlI GDGCHC 1 cut(s) 24
MlsI TGGCCA 1 cut(s) 1330
MluCI AATT 9 cut(s) 25, 638, 689, 768, 930, 1206, 1364, 1403, 1499
MluNI TGGCCA 1 cut(s) 1330
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 2 cut(s) 131, 875
Mox20I TGGCCA 1 cut(s) 1330
Mph1103I ATGCAT 1 cut(s) 211
MreI CGCCGGCG 1 cut(s) 59
MroNI GCCGGC 1 cut(s) 59
MroXI GAANNNNTTC 2 cut(s) 138, 691
MscI TGGCCA 1 cut(s) 1330
MseI TTAA 5 cut(s) 431, 1251, 1367, 1401, 1455
MslI CAYNNNNRTG 3 cut(s) 326, 448, 1251
Msp20I TGGCCA 1 cut(s) 1330
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 2 cut(s) 60, 1118
MspR9I CCNGG 3 cut(s) 984, 1119, 1302
MunI CAATTG 1 cut(s) 768
Mva1269I GAATGC 2 cut(s) 220, 321
MvaI CCWGG 2 cut(s) 984, 1302
MvnI CGCG 1 cut(s) 617
MwoI GCNNNNNNNGC 5 cut(s) 54, 60, 215, 1183, 1202
NaeI GCCGGC 1 cut(s) 61
NarI GGCGCC 1 cut(s) 57
NciI CCSGG 1 cut(s) 1119
NdeI CATATG 1 cut(s) 447
NdeII GATC 8 cut(s) 10, 201, 330, 523, 532, 634, 1028, 1531
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 9 cut(s) 337, 469, 846, 900, 1097, 1186, 1196, 1250, 1329
NlaIV GGNNCC 6 cut(s) 12, 58, 225, 277, 621, 1041
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 2 cut(s) 172, 671
NsbI TGCGCA 1 cut(s) 1047
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 4 cut(s) 469, 846, 1186, 1250
OliI CACNNNNGTG 1 cut(s) 448
PagI TCATGA 1 cut(s) 333
PaqCI CACCTGC 1 cut(s) 187
PceI AGGCCT 1 cut(s) 1483
PciI ACATGT 1 cut(s) 1246
PctI GAATGC 2 cut(s) 220, 321
PdiI GCCGGC 1 cut(s) 61
PdmI GAANNNNTTC 2 cut(s) 138, 691
PfeI GAWTC 2 cut(s) 950, 1171
PflMI CCANNNNNTGG 1 cut(s) 1337
PleI GAGTC 2 cut(s) 130, 874
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 2 cut(s) 130, 874
PpuMI RGGWCCY 2 cut(s) 38, 224
PscI ACATGT 1 cut(s) 1246
Psp124BI GAGCTC 1 cut(s) 24
Psp5II RGGWCCY 2 cut(s) 38, 224
Psp6I CCWGG 2 cut(s) 982, 1300
PspGI CCWGG 2 cut(s) 982, 1300
PspN4I GGNNCC 6 cut(s) 12, 58, 225, 277, 621, 1041
PspPI GGNCC 3 cut(s) 38, 224, 701
PspPPI RGGWCCY 2 cut(s) 38, 224
PsuI RGATCY 3 cut(s) 10, 523, 1028
RsaI GTAC 2 cut(s) 293, 1491
RsaNI GTAC 2 cut(s) 292, 1490
RseI CAYNNNNRTG 3 cut(s) 326, 448, 1251
SacI GAGCTC 1 cut(s) 24
SacII CCGCGG 1 cut(s) 618
SalI GTCGAC 1 cut(s) 254
SaqAI TTAA 5 cut(s) 431, 1251, 1367, 1401, 1455
Sau3AI GATC 8 cut(s) 10, 201, 330, 523, 532, 634, 1028, 1531
Sau96I GGNCC 3 cut(s) 38, 224, 701
SchI GAGTC 2 cut(s) 131, 875
ScrFI CCNGG 3 cut(s) 984, 1119, 1302
SduI GDGCHC 1 cut(s) 24
SexAI ACCWGGT 2 cut(s) 982, 1300
SfaNI GCATC 4 cut(s) 196, 1012, 1057, 1299
SfoI GGCGCC 1 cut(s) 58
Sfr303I CCGCGG 1 cut(s) 618
SgrAI CRCCGGYG 1 cut(s) 59
SgrBI CCGCGG 1 cut(s) 618
SinI GGWCC 2 cut(s) 38, 224
SmiMI CAYNNNNRTG 3 cut(s) 326, 448, 1251
SmlI CTYRAG 2 cut(s) 719, 1155
SmoI CTYRAG 2 cut(s) 719, 1155
Sse9I AATT 9 cut(s) 25, 638, 689, 768, 930, 1206, 1364, 1403, 1499
SseBI AGGCCT 1 cut(s) 1483
SspDI GGCGCC 1 cut(s) 56
SspMI CTAG 3 cut(s) 528, 1053, 1080
SstI GAGCTC 1 cut(s) 24
StuI AGGCCT 1 cut(s) 1483
StyD4I CCNGG 3 cut(s) 982, 1117, 1300
StyI CCWWGG 1 cut(s) 1336
TaaI ACNGT 4 cut(s) 364, 514, 816, 1223
TaiI ACGT 1 cut(s) 492
TaqI TCGA 3 cut(s) 204, 255, 1459
TaqII GACCGA 1 cut(s) 169
TasI AATT 9 cut(s) 25, 638, 689, 768, 930, 1206, 1364, 1403, 1499
TatI WGTACW 1 cut(s) 291
TauI GCSGC 5 cut(s) 54, 57, 392, 617, 1199
TfiI GAWTC 2 cut(s) 950, 1171
Tru1I TTAA 5 cut(s) 431, 1251, 1367, 1401, 1455
Tru9I TTAA 5 cut(s) 431, 1251, 1367, 1401, 1455
TscAI CASTG 3 cut(s) 633, 1241, 1360
TseFI GTSAC 2 cut(s) 172, 671
TseI GCWGC 5 cut(s) 48, 611, 1199, 1202, 1391
Tsp45I GTSAC 2 cut(s) 172, 671
TspDTI ATGAA 5 cut(s) 684, 948, 1074, 1254, 1314
TspRI CASTG 3 cut(s) 633, 1241, 1360
Van91I CCANNNNNTGG 1 cut(s) 1337
VpaK11BI GGWCC 2 cut(s) 38, 224
XagI CCTNNNNNAGG 1 cut(s) 794
XapI RAATTY 2 cut(s) 689, 1403
XbaI TCTAGA 1 cut(s) 1079
XceI RCATGY 4 cut(s) 469, 846, 1186, 1250
XmiI GTMKAC 1 cut(s) 255
XmnI GAANNNNTTC 2 cut(s) 138, 691
XspI CTAG 3 cut(s) 528, 1053, 1080
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.