Rw5G018100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000079
Physical Location & Seq
Reverse (-)
23418096 .. 23419486
1391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G018100.1

Sequence Viewer

Length: 993 bp
ATGTCAAAGAGTCAAGCAAGAATTAAAGATAGGATTAGTACATTACCTGACGAAATTCTTTGCAAAATACTTTCTTGCCTTGAACTACAATGTGCTGTGAGGACCACCGTTTTGTCCGCGAGATGGAAGAATTTATGGACTTCTCTTCCCAACCTATGGTTCTGCAATGAAGATTTTAGTGATGATGATGCTTTTATGACGTTTGTGGATCGTGTTCTTTTCTTTCGTGACTCGTCAGACATCAAAGAATTCTATCTTGACCTCGAGAAACCAAAGGATGATTTCTCTCGTATTGAAAGTTGGATTTGTACCGCCATTAGGCGGAATGTTGTTGAACTTAATCTTTGTGTCAATTTATATCCGGACAAGACTTTTGAATTGCCTCGAAGCCTTTTCACTTGCAAAACACTAGAGGTGTTGTACCTGACGTCAAATTTTATTGCCAATCCTCCAAAATCTGGGTGTTTCCCGAATCTCAAGTTCCTCGATGTTCTGGTTCATTTTCCTAACCATAATAACTCGTCATTAGGACAGATTTTCTCTAACTGCCCTGTTCTTGAGGATTTGAGAATTCATGGGCCTCTTGGGGCGTATGATGAAGTTTTGGATTTCAACATCTCTGCACCTGAACTGAAGAGATTAACAATAGGATTGTACATTGACGATTTTGAGGATGAAGAGTATAATTTTCATATTAATGCTCCAAAACTTGAAGTCTTGAACCTCCCTGAGGGTGATTCGTCAGTGTTTTCATTTGAGATCAGTGCAAAGTCCGTTGTCAAAGCCAATATCAATCTTTCTAGCTGTCGTGTACATTTTGACAGTACAAATGGACTTCTGGAAGCCATCTCCAATGTCAAACAGCTCTCTCTTTCAAATCATTATTTGGAGGGAGTTGTGCAACACATTCCCTTCGTACCTCCACGTACTATTCATTCTTCTTTCTTGCCAATGGTTCTTATTTTTCTTTCTTTTATCATAAATAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

330

Amino Acids

37.73

Weight (kDa)

5.09

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 52 1.5e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 79 - 294 2.4e-09 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 99 - 243 3.3e-13 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 431
AccB7I CCANNNNNTGG 2 cut(s) 156, 458
AccII CGCG 1 cut(s) 119
AccIII TCCGGA 1 cut(s) 361
AciI CCGC 3 cut(s) 117, 312, 322
AclWI GGATC 1 cut(s) 216
AcsI RAATTY 5 cut(s) 54, 130, 248, 433, 570
AcuI CTGAAG 1 cut(s) 653
AcyI GRCGYC 1 cut(s) 428
AfaI GTAC 8 cut(s) 40, 310, 422, 656, 813, 826, 918, 928
AfiI CCNNNNNNNGG 6 cut(s) 123, 156, 318, 321, 458, 730
AgsI TTSAA 8 cut(s) 83, 296, 335, 377, 613, 713, 721, 876
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 2 cut(s) 804, 865
AluI AGCT 2 cut(s) 804, 865
AlwI GGATC 1 cut(s) 216
Ama87I CYCGRG 1 cut(s) 263
Aor13HI TCCGGA 1 cut(s) 361
AoxI GGCC 1 cut(s) 578
ApoI RAATTY 5 cut(s) 54, 130, 248, 433, 570
ArsI GACNNNNNNTTYG 4 cut(s) 94, 126, 356, 388
AseI ATTAAT 1 cut(s) 696
AspS9I GGNCC 2 cut(s) 102, 578
AsuHPI GGTGA 1 cut(s) 746
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 102
AxyI CCTNAGG 1 cut(s) 729
BccI CCATC 2 cut(s) 117, 854
BfaI CTAG 2 cut(s) 410, 801
Bme18I GGWCC 1 cut(s) 102
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 2 cut(s) 102, 578
BmsI GCATC 1 cut(s) 178
BpuEI CTTGAG 2 cut(s) 461, 578
BsaAI YACGTR 1 cut(s) 926
BsaHI GRCGYC 1 cut(s) 428
BsaWI WCCGGW 1 cut(s) 361
Bsc4I CCNNNNNNNGG 6 cut(s) 123, 156, 318, 321, 458, 730
Bse21I CCTNAGG 1 cut(s) 729
Bse3DI GCAATG 1 cut(s) 172
BseAI TCCGGA 1 cut(s) 361
BseGI GGATG 2 cut(s) 283, 679
BseLI CCNNNNNNNGG 6 cut(s) 123, 156, 318, 321, 458, 730
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 720
BsgI GTGCAG 1 cut(s) 606
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 1 cut(s) 580
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 1 cut(s) 362
BslI CCNNNNNNNGG 6 cut(s) 123, 156, 318, 321, 458, 730
BsnI GGCC 1 cut(s) 580
BsoBI CYCGRG 1 cut(s) 263
Bsp13I TCCGGA 1 cut(s) 361
Bsp1407I TGTACA 2 cut(s) 654, 811
Bsp143I GATC 2 cut(s) 208, 759
BspACI CCGC 3 cut(s) 117, 312, 322
BspANI GGCC 1 cut(s) 580
BspCNI CTCAG 1 cut(s) 721
BspEI TCCGGA 1 cut(s) 361
BspFNI CGCG 1 cut(s) 119
BspPI GGATC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 172
BsrGI TGTACA 2 cut(s) 654, 811
BssMI GATC 2 cut(s) 208, 759
BssNI GRCGYC 1 cut(s) 428
Bst4CI ACNGT 2 cut(s) 109, 824
Bst6I CTCTTC 3 cut(s) 150, 629, 672
BstACI GRCGYC 1 cut(s) 428
BstAUI TGTACA 2 cut(s) 654, 811
BstBAI YACGTR 1 cut(s) 926
BstDEI CTNAG 1 cut(s) 729
BstENI CCTNNNNNAGG 1 cut(s) 728
BstF5I GGATG 2 cut(s) 283, 679
BstFNI CGCG 1 cut(s) 119
BstKTI GATC 2 cut(s) 211, 762
BstMBI GATC 2 cut(s) 208, 759
BstUI CGCG 1 cut(s) 119
Bsu36I CCTNAGG 1 cut(s) 729
BsuRI GGCC 1 cut(s) 580
BtsCI GGATG 2 cut(s) 283, 679
BtsIMutI CAGTG 2 cut(s) 750, 769
Cfr13I GGNCC 2 cut(s) 102, 578
Csp6I GTAC 8 cut(s) 39, 309, 421, 655, 812, 825, 917, 927
CviAII CATG 1 cut(s) 575
CviJI RGCY 6 cut(s) 390, 580, 785, 804, 845, 865
CviKI_1 RGCY 6 cut(s) 390, 580, 785, 804, 845, 865
CviQI GTAC 8 cut(s) 39, 309, 421, 655, 812, 825, 917, 927
DdeI CTNAG 1 cut(s) 729
DpnI GATC 2 cut(s) 210, 761
DpnII GATC 2 cut(s) 208, 759
Eam1104I CTCTTC 3 cut(s) 150, 629, 672
EarI CTCTTC 3 cut(s) 150, 629, 672
EciI GGCGGA 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 653
Eco81I CCTNAGG 1 cut(s) 729
Eco88I CYCGRG 1 cut(s) 263
EcoNI CCTNNNNNAGG 1 cut(s) 728
EcoRI GAATTC 2 cut(s) 248, 570
FaeI CATG 1 cut(s) 578
FatI CATG 1 cut(s) 574
FokI GGATG 2 cut(s) 290, 686
FspBI CTAG 2 cut(s) 410, 801
HaeIII GGCC 1 cut(s) 580
HapII CCGG 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 428
Hin1II CATG 1 cut(s) 578
HinfI GANTC 4 cut(s) 10, 230, 472, 737
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 746
Hpy166II GTNNAC 1 cut(s) 812
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 8 cut(s) 227, 257, 265, 362, 469, 557, 718, 839
Hpy8I GTNNAC 1 cut(s) 812
HpyAV CCTTC 1 cut(s) 922
HpyCH4III ACNGT 2 cut(s) 109, 824
HpyCH4IV ACGT 3 cut(s) 200, 428, 925
HpyCH4V TGCA 6 cut(s) 63, 165, 402, 623, 767, 901
HpyF3I CTNAG 1 cut(s) 729
HpySE526I ACGT 3 cut(s) 200, 428, 925
Hsp92I GRCGYC 1 cut(s) 428
Hsp92II CATG 1 cut(s) 578
Kpn2I TCCGGA 1 cut(s) 361
Kzo9I GATC 2 cut(s) 208, 759
LmnI GCTCC 1 cut(s) 706
LpnPI CCDG 9 cut(s) 60, 375, 437, 444, 479, 564, 639, 741, 824
LweI GCATC 1 cut(s) 178
MaeI CTAG 2 cut(s) 410, 801
MaeII ACGT 3 cut(s) 200, 428, 925
MaeIII GTNAC 1 cut(s) 227
MalI GATC 2 cut(s) 210, 761
MboI GATC 2 cut(s) 208, 759
MboII GAAGA 6 cut(s) 137, 139, 182, 646, 689, 930
MluCI AATT 9 cut(s) 21, 54, 130, 248, 352, 377, 433, 570, 685
MlyI GAGTC 2 cut(s) 19, 224
MmeI TCCRAC 1 cut(s) 281
MroI TCCGGA 1 cut(s) 361
MseI TTAA 4 cut(s) 24, 339, 641, 696
MslI CAYNNNNRTG 1 cut(s) 696
MspI CCGG 1 cut(s) 362
MvnI CGCG 1 cut(s) 119
NdeII GATC 2 cut(s) 208, 759
NlaIII CATG 1 cut(s) 578
NmuCI GTSAC 1 cut(s) 227
PaeR7I CTCGAG 1 cut(s) 263
PfeI GAWTC 2 cut(s) 472, 737
PflMI CCANNNNNTGG 2 cut(s) 156, 458
PleI GAGTC 2 cut(s) 18, 224
PpsI GAGTC 2 cut(s) 18, 224
Ppu21I YACGTR 1 cut(s) 926
PshBI ATTAAT 1 cut(s) 696
PspPI GGNCC 2 cut(s) 102, 578
RsaI GTAC 8 cut(s) 40, 310, 422, 656, 813, 826, 918, 928
RsaNI GTAC 8 cut(s) 39, 309, 421, 655, 812, 825, 917, 927
RseI CAYNNNNRTG 1 cut(s) 696
SaqAI TTAA 4 cut(s) 24, 339, 641, 696
Sau3AI GATC 2 cut(s) 208, 759
Sau96I GGNCC 2 cut(s) 102, 578
SchI GAGTC 2 cut(s) 19, 224
SfaNI GCATC 1 cut(s) 178
Sfr274I CTCGAG 1 cut(s) 263
SinI GGWCC 1 cut(s) 102
SlaI CTCGAG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 696
SmlI CTYRAG 3 cut(s) 263, 476, 557
SmoI CTYRAG 3 cut(s) 263, 476, 557
Sse9I AATT 9 cut(s) 21, 54, 130, 248, 352, 377, 433, 570, 685
SsiI CCGC 3 cut(s) 117, 312, 322
SspMI CTAG 2 cut(s) 410, 801
TaaI ACNGT 2 cut(s) 109, 824
TaiI ACGT 3 cut(s) 203, 431, 928
TaqI TCGA 3 cut(s) 264, 385, 486
TasI AATT 9 cut(s) 21, 54, 130, 248, 352, 377, 433, 570, 685
TatI WGTACW 4 cut(s) 38, 654, 811, 824
TfiI GAWTC 2 cut(s) 472, 737
Tru1I TTAA 4 cut(s) 24, 339, 641, 696
Tru9I TTAA 4 cut(s) 24, 339, 641, 696
TscAI CASTG 2 cut(s) 750, 769
TseFI GTSAC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 8 cut(s) 183, 488, 563, 612, 680, 690, 741, 923
TspGWI ACGGA 1 cut(s) 763
TspRI CASTG 2 cut(s) 750, 769
Van91I CCANNNNNTGG 2 cut(s) 156, 458
VpaK11BI GGWCC 1 cut(s) 102
VspI ATTAAT 1 cut(s) 696
XagI CCTNNNNNAGG 1 cut(s) 728
XapI RAATTY 5 cut(s) 54, 130, 248, 433, 570
XhoI CTCGAG 1 cut(s) 263
XspI CTAG 2 cut(s) 410, 801
ZraI GACGTC 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.