Rmu_sc0003864.1_g000006

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003864.1
OG0000079
Physical Location & Seq
Reverse (-)
31404 .. 33921
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003864.1_g000006.1.cds

Sequence Viewer

Length: 1236 bp
atgtcaaagagtaaagcaagagttaaggataggattagtgcattacctgatgaagttgtttgtaaaatactttcctgccttgatatacaatctgctgtaaggaccaccattttgtccccgagctggaacaatttatggacttctcttcccaacctatgcttctgcaatggttatttccttgatgatgatgatgctttcatgacgtttgtggatcgtatttgtaccgctattaggcggaatgttgttgaacttaatctttgtgtcaactcatttccagacaagactttcgaattgcctcgaagccttttcacttgcaaaacactagaggtgttgtacctgaagtcaaattttattgccaatcctccaaaatctgggtgtttcccaaatctcaaggtcctcgacgttctggttcattttcctaaccataataactcatcatttggacagattttctctatctgccctgtgcttgaggatttgagaattgatggacctcttggggactgttatgatgttttggatttcaaaatctctgcacctgaactgaagagattaacaatagaattgtacattaccaatttagaggatgaagagtataatttttacattaatgctccaaaacttgaagtctttaacctccctgccggtgattcgtcagtgttttcatttgagatcaatgcaaagtccctcttcaaagccaatatctatcttaatagccgttttagacatgttgatggtacaaatggacttctggaagccatctccaatgtcaaacagctgtctctttcaactcgtaatttggtgggtggtgttcctgcttttgataatctaaaccatttggaactgactctttgcgggttctcctgtaggcgatatctaacagagtttctcaagagatcacggaatctagaatatcttgttatcaaacatttaagagttgcctcagtgccttctcatgtgcaaaataccggtggttttgaagctgtggtcaaattttattatcaatactcctacttcccagctctcatgtccctgaatgtttcatttgattctgctgatatttcctcaatacaaaagctcttttctcacttccccgtgcttgaagatttgagcgatcttttcccattcaatggaccaactgaagatttgaatgtcaacatctctgcacctaaactgaaaaggttgatcatggatttgctcggtgatctacagtgcaattttcacatcaaatcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

411

Amino Acids

46.58

Weight (kDa)

5.94

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 371, 1130
AciI CCGC 3 cut(s) 225, 235, 855
AclWI GGATC 1 cut(s) 219
AcsI RAATTY 2 cut(s) 346, 992
AcuI CTGAAG 3 cut(s) 359, 566, 1161
AfaI GTAC 4 cut(s) 223, 335, 569, 739
AfiI CCNNNNNNNGG 4 cut(s) 123, 231, 371, 1130
AflIII ACRYGT 1 cut(s) 727
AgeI ACCGGT 1 cut(s) 968
AgsI TTSAA 9 cut(s) 248, 526, 626, 694, 789, 980, 1103, 1129, 1150
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 5 cut(s) 123, 778, 983, 1022, 1078
AluI AGCT 5 cut(s) 123, 778, 983, 1022, 1078
Alw26I GTCTC 1 cut(s) 786
AlwI GGATC 1 cut(s) 219
Ama87I CYCGRG 1 cut(s) 118
ApoI RAATTY 2 cut(s) 346, 992
ArsI GACNNNNNNTTYG 4 cut(s) 94, 126, 269, 301
AseI ATTAAT 1 cut(s) 609
AsiGI ACCGGT 1 cut(s) 968
AspS9I GGNCC 4 cut(s) 102, 394, 491, 1133
AsuHPI GGTGA 2 cut(s) 659, 1214
AsuII TTCGAA 1 cut(s) 288
AvaI CYCGRG 1 cut(s) 118
AvaII GGWCC 4 cut(s) 102, 394, 491, 1133
BccI CCATC 3 cut(s) 482, 728, 767
BceAI ACGGC 1 cut(s) 702
BclI TGATCA 1 cut(s) 1185
BcoDI GTCTC 1 cut(s) 786
BfaI CTAG 2 cut(s) 323, 908
BfmI CTRYAG 2 cut(s) 865, 1208
Bme18I GGWCC 4 cut(s) 102, 394, 491, 1133
BmeT110I CYCGRG 1 cut(s) 118
BmgT120I GGNCC 4 cut(s) 102, 394, 491, 1133
BmsI GCATC 1 cut(s) 181
Bpu14I TTCGAA 1 cut(s) 288
BpuEI CTTGAG 3 cut(s) 374, 491, 875
BsaWI WCCGGW 1 cut(s) 968
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 231, 371, 1130
Bse118I RCCGGY 2 cut(s) 644, 968
Bse3DI GCAATG 1 cut(s) 172
BseGI GGATG 1 cut(s) 592
BseLI CCNNNNNNNGG 4 cut(s) 123, 231, 371, 1130
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 957
BseYI CCCAGC 1 cut(s) 1018
BsgI GTGCAG 2 cut(s) 519, 1149
BshTI ACCGGT 1 cut(s) 968
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 2 cut(s) 645, 969
BslFI GGGAC 4 cut(s) 100, 515, 670, 1015
BslI CCNNNNNNNGG 4 cut(s) 123, 231, 371, 1130
BsmAI GTCTC 1 cut(s) 786
BsmFI GGGAC 4 cut(s) 100, 515, 670, 1015
BsoBI CYCGRG 1 cut(s) 118
Bsp119I TTCGAA 1 cut(s) 288
Bsp1407I TGTACA 1 cut(s) 567
Bsp143I GATC 6 cut(s) 211, 672, 896, 1114, 1185, 1204
BspACI CCGC 3 cut(s) 225, 235, 855
BspCNI CTCAG 1 cut(s) 956
BspHI TCATGA 1 cut(s) 198
BspPI GGATC 1 cut(s) 219
BspT104I TTCGAA 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 172
BsrFI RCCGGY 2 cut(s) 644, 968
BsrGI TGTACA 1 cut(s) 567
BssAI RCCGGY 2 cut(s) 644, 968
BssMI GATC 6 cut(s) 211, 672, 896, 1114, 1185, 1204
Bst4CI ACNGT 2 cut(s) 506, 1212
Bst6I CTCTTC 4 cut(s) 150, 542, 585, 695
BstAUI TGTACA 1 cut(s) 567
BstBI TTCGAA 1 cut(s) 288
BstDEI CTNAG 1 cut(s) 943
BstF5I GGATG 1 cut(s) 592
BstKTI GATC 6 cut(s) 214, 675, 899, 1117, 1188, 1207
BstMAI GTCTC 1 cut(s) 786
BstMBI GATC 6 cut(s) 211, 672, 896, 1114, 1185, 1204
BstNSI RCATGY 1 cut(s) 731
BstSFI CTRYAG 2 cut(s) 865, 1208
BtsCI GGATG 1 cut(s) 592
BtsIMutI CAGTG 3 cut(s) 663, 951, 1217
CciI TCATGA 1 cut(s) 198
Cfr10I RCCGGY 2 cut(s) 644, 968
Cfr13I GGNCC 4 cut(s) 102, 394, 491, 1133
Csp6I GTAC 4 cut(s) 222, 334, 568, 738
CspAI ACCGGT 1 cut(s) 968
CviAII CATG 5 cut(s) 199, 728, 956, 1027, 1189
CviJI RGCY 9 cut(s) 123, 303, 698, 717, 758, 778, 983, 1022, 1078
CviKI_1 RGCY 9 cut(s) 123, 303, 698, 717, 758, 778, 983, 1022, 1078
CviQI GTAC 4 cut(s) 222, 334, 568, 738
DdeI CTNAG 1 cut(s) 943
DpnI GATC 6 cut(s) 213, 674, 898, 1116, 1187, 1206
DpnII GATC 6 cut(s) 211, 672, 896, 1114, 1185, 1204
Eam1104I CTCTTC 4 cut(s) 150, 542, 585, 695
EarI CTCTTC 4 cut(s) 150, 542, 585, 695
EciI GGCGGA 1 cut(s) 250
Eco32I GATATC 1 cut(s) 875
Eco47I GGWCC 4 cut(s) 102, 394, 491, 1133
Eco57I CTGAAG 3 cut(s) 359, 566, 1161
Eco88I CYCGRG 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 394
EcoRV GATATC 1 cut(s) 875
FaeI CATG 5 cut(s) 202, 731, 959, 1030, 1192
FalI AAGNNNNNCTT 2 cut(s) 674, 706
FaqI GGGAC 4 cut(s) 100, 515, 670, 1015
FatI CATG 5 cut(s) 198, 727, 955, 1026, 1188
FauI CCCGC 1 cut(s) 848
FbaI TGATCA 1 cut(s) 1185
FokI GGATG 1 cut(s) 599
FspBI CTAG 2 cut(s) 323, 908
GsaI CCCAGC 1 cut(s) 1022
HapII CCGG 2 cut(s) 645, 969
Hin1II CATG 5 cut(s) 202, 731, 959, 1030, 1192
HincII GTYRAC 2 cut(s) 265, 1156
HindII GTYRAC 2 cut(s) 265, 1156
HinfI GANTC 4 cut(s) 650, 847, 904, 1049
HpaII CCGG 2 cut(s) 645, 969
HphI GGTGA 2 cut(s) 659, 1214
Hpy166II GTNNAC 2 cut(s) 265, 1156
Hpy188III TCNNGA 6 cut(s) 199, 275, 752, 892, 908, 1233
Hpy8I GTNNAC 2 cut(s) 265, 1156
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 1 cut(s) 960
HpyCH4III ACNGT 2 cut(s) 506, 1212
HpyCH4IV ACGT 2 cut(s) 203, 402
HpyCH4V TGCA 8 cut(s) 41, 165, 315, 536, 680, 961, 1166, 1215
HpyF3I CTNAG 1 cut(s) 943
HpySE526I ACGT 2 cut(s) 203, 402
Hsp92II CATG 5 cut(s) 202, 731, 959, 1030, 1192
Ksp22I TGATCA 1 cut(s) 1185
Kzo9I GATC 6 cut(s) 211, 672, 896, 1114, 1185, 1204
LmnI GCTCC 1 cut(s) 619
LweI GCATC 1 cut(s) 181
MaeI CTAG 2 cut(s) 323, 908
MaeII ACGT 2 cut(s) 203, 402
MalI GATC 6 cut(s) 213, 674, 898, 1116, 1187, 1206
MboI GATC 6 cut(s) 211, 672, 896, 1114, 1185, 1204
MboII GAAGA 6 cut(s) 137, 559, 602, 682, 1115, 1154
MlyI GAGTC 1 cut(s) 841
MseI TTAA 7 cut(s) 24, 252, 554, 609, 633, 711, 932
MslI CAYNNNNRTG 1 cut(s) 732
MspA1I CMGCKG 1 cut(s) 778
MspI CCGG 2 cut(s) 645, 969
NdeII GATC 6 cut(s) 211, 672, 896, 1114, 1185, 1204
NlaIII CATG 5 cut(s) 202, 731, 959, 1030, 1192
NspI RCATGY 1 cut(s) 731
NspV TTCGAA 1 cut(s) 288
PagI TCATGA 1 cut(s) 198
PciI ACATGT 1 cut(s) 727
PfeI GAWTC 3 cut(s) 650, 904, 1049
PflMI CCANNNNNTGG 2 cut(s) 371, 1130
PinAI ACCGGT 1 cut(s) 968
PleI GAGTC 1 cut(s) 841
PpsI GAGTC 1 cut(s) 841
PpuMI RGGWCCY 1 cut(s) 394
PscI ACATGT 1 cut(s) 727
PshBI ATTAAT 1 cut(s) 609
Psp5II RGGWCCY 1 cut(s) 394
PspFI CCCAGC 1 cut(s) 1018
PspPI GGNCC 4 cut(s) 102, 394, 491, 1133
PspPPI RGGWCCY 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 778
RsaI GTAC 4 cut(s) 223, 335, 569, 739
RsaNI GTAC 4 cut(s) 222, 334, 568, 738
RseI CAYNNNNRTG 1 cut(s) 732
SaqAI TTAA 7 cut(s) 24, 252, 554, 609, 633, 711, 932
Sau3AI GATC 6 cut(s) 211, 672, 896, 1114, 1185, 1204
Sau96I GGNCC 4 cut(s) 102, 394, 491, 1133
SchI GAGTC 1 cut(s) 841
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 2 cut(s) 865, 1208
SfuI TTCGAA 1 cut(s) 288
SinI GGWCC 4 cut(s) 102, 394, 491, 1133
SmiMI CAYNNNNRTG 1 cut(s) 732
SmlI CTYRAG 3 cut(s) 389, 470, 890
SmoI CTYRAG 3 cut(s) 389, 470, 890
SsiI CCGC 3 cut(s) 225, 235, 855
SspMI CTAG 2 cut(s) 323, 908
TaaI ACNGT 2 cut(s) 506, 1212
TaiI ACGT 2 cut(s) 206, 405
TaqI TCGA 3 cut(s) 288, 298, 399
TatI WGTACW 1 cut(s) 567
TfiI GAWTC 3 cut(s) 650, 904, 1049
Tru1I TTAA 7 cut(s) 24, 252, 554, 609, 633, 711, 932
Tru9I TTAA 7 cut(s) 24, 252, 554, 609, 633, 711, 932
TscAI CASTG 3 cut(s) 663, 951, 1217
TspDTI ATGAA 6 cut(s) 66, 187, 401, 603, 654, 1032
TspGWI ACGGA 1 cut(s) 916
TspRI CASTG 3 cut(s) 663, 951, 1217
Van91I CCANNNNNTGG 2 cut(s) 371, 1130
VpaK11BI GGWCC 4 cut(s) 102, 394, 491, 1133
VspI ATTAAT 1 cut(s) 609
XapI RAATTY 2 cut(s) 346, 992
XbaI TCTAGA 1 cut(s) 907
XceI RCATGY 1 cut(s) 731
XspI CTAG 2 cut(s) 323, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.