Rorug05G0105200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000079
Physical Location & Seq
Reverse (-)
9260376 .. 9261921
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0105200.1

Sequence Viewer

Length: 420 bp
ATGCTTTATGTAGATGTGGATTTGCTGCAAGAAAGTTGGCCAAAAGTGGAATCTTCTTTAGTAGAGTTTGGCGTTTTATGCACCCTGGATGTTGAGGGTAAAATGAAAGTTGCAAGAGCCACAAGGGATCAAGACCCAAATATTATTCTCAGGGCTATGGATGTTTTGGAGCTTTTGTCAAGAAGTGTTCCGGCAGAATGGGAGCAATTTCTTGCACGGAGGAAGCTTCTGGCTGACTATGTCCTAAAGGTACTGTTTGAACTGACAGATTGTGGAGTTTTTCTTAAGGGAAACACCATTGCTGTGATTGGTGGTTCACTCCAAGGAATAAATATAGTAAGGAGGATTGTGGAAGACTGCATTGCTCATGATGTGCCTCCTCTACCCCGGGCGCGATTGATGAAAAAGAAGAACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

139

Amino Acids

15.71

Weight (kDa)

5.91

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 8 - 66 7.3e-10 Krr1 KH1 domain
KH_KRR1_2nd PF21800 66 - 135 3.8e-10 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 394
AclWI GGATC 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 38
AfaI GTAC 1 cut(s) 252
AflII CTTAAG 1 cut(s) 284
AgsI TTSAA 1 cut(s) 260
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 2 cut(s) 172, 226
AluI AGCT 2 cut(s) 172, 226
AlwI GGATC 1 cut(s) 135
Ama87I CYCGRG 1 cut(s) 387
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 394
AsuC2I CCSGG 2 cut(s) 388, 389
AvaI CYCGRG 1 cut(s) 387
BalI TGGCCA 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 12
BciT130I CCWGG 1 cut(s) 86
BcnI CCSGG 2 cut(s) 388, 389
BfrI CTTAAG 1 cut(s) 284
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 3 cut(s) 86, 388, 389
BmeT110I CYCGRG 1 cut(s) 387
BmrFI CCNGG 3 cut(s) 86, 388, 389
BpiI GAAGAC 1 cut(s) 360
BpuMI CCSGG 2 cut(s) 388, 389
BsaJI CCNNGG 4 cut(s) 84, 322, 386, 387
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bse3DI GCAATG 2 cut(s) 297, 360
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 4 cut(s) 84, 322, 386, 387
BseGI GGATG 2 cut(s) 94, 166
BseMI GCAATG 2 cut(s) 297, 360
BseMII CTCAG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 369
BseXI GCAGC 1 cut(s) 12
Bsh1236I CGCG 1 cut(s) 394
BshFI GGCC 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 2 cut(s) 191, 388
BsnI GGCC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 387
Bsp143I GATC 1 cut(s) 127
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 162
BspFNI CGCG 1 cut(s) 394
BspHI TCATGA 1 cut(s) 367
BspPI GGATC 1 cut(s) 135
BspTI CTTAAG 1 cut(s) 284
BsrDI GCAATG 2 cut(s) 297, 360
BssECI CCNNGG 4 cut(s) 84, 322, 386, 387
BssMI GATC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 322
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 255
BstAFI CTTAAG 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 94, 166
BstFNI CGCG 1 cut(s) 394
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 3 cut(s) 84, 386, 387
BstUI CGCG 1 cut(s) 394
BstV1I GCAGC 1 cut(s) 12
BstV2I GAAGAC 1 cut(s) 360
BsuRI GGCC 1 cut(s) 40
BtsCI GGATG 2 cut(s) 94, 166
CciI TCATGA 1 cut(s) 367
CfoI GCGC 1 cut(s) 394
Cfr9I CCCGGG 1 cut(s) 387
Csp6I GTAC 1 cut(s) 251
CviAII CATG 1 cut(s) 368
CviJI RGCY 6 cut(s) 40, 119, 155, 172, 226, 233
CviKI_1 RGCY 6 cut(s) 40, 119, 155, 172, 226, 233
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 1 cut(s) 149
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 322
Eco88I CYCGRG 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 322
FaeI CATG 1 cut(s) 371
FaiI YATR 6 cut(s) 9, 79, 158, 240, 335, 369
FatI CATG 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 2 cut(s) 101, 173
Fsp4HI GCNGC 1 cut(s) 26
GlaI GCGC 1 cut(s) 393
GluI GCNGC 1 cut(s) 26
HaeIII GGCC 1 cut(s) 40
HapII CCGG 2 cut(s) 191, 388
HhaI GCGC 1 cut(s) 394
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 1 cut(s) 50
HpaII CCGG 2 cut(s) 191, 388
Hpy166II GTNNAC 1 cut(s) 317
Hpy188III TCNNGA 3 cut(s) 131, 180, 368
Hpy8I GTNNAC 1 cut(s) 317
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 5 cut(s) 28, 81, 113, 215, 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 1 cut(s) 392
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 2 cut(s) 169, 202
LpnPI CCDG 6 cut(s) 71, 98, 136, 204, 215, 401
Lsp1109I GCAGC 1 cut(s) 12
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 2 cut(s) 45, 365
MlsI TGGCCA 1 cut(s) 40
MluCI AATT 1 cut(s) 206
MluNI TGGCCA 1 cut(s) 40
MnlI CCTC 5 cut(s) 88, 213, 336, 387, 390
Mox20I TGGCCA 1 cut(s) 40
MscI TGGCCA 1 cut(s) 40
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 302
Msp20I TGGCCA 1 cut(s) 40
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 2 cut(s) 191, 388
MspR9I CCNGG 3 cut(s) 86, 388, 389
MvaI CCWGG 1 cut(s) 86
MvnI CGCG 1 cut(s) 394
MwoI GCNNNNNNNGC 1 cut(s) 78
NciI CCSGG 2 cut(s) 388, 389
NdeII GATC 1 cut(s) 127
NlaIII CATG 1 cut(s) 371
PagI TCATGA 1 cut(s) 367
PfeI GAWTC 1 cut(s) 50
PflFI GACNNNGTC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PsyI GACNNNGTC 1 cut(s) 239
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 1 cut(s) 127
ScrFI CCNGG 3 cut(s) 86, 388, 389
SetI ASST 3 cut(s) 174, 228, 252
SmaI CCCGGG 1 cut(s) 389
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 1 cut(s) 206
SspI AATATT 1 cut(s) 142
StyD4I CCNGG 3 cut(s) 84, 386, 387
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 1 cut(s) 255
TasI AATT 1 cut(s) 206
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 2 cut(s) 119, 416
TspGWI ACGGA 1 cut(s) 232
TspMI CCCGGG 1 cut(s) 387
Tth111I GACNNNGTC 1 cut(s) 239
Vha464I CTTAAG 1 cut(s) 284
XmaI CCCGGG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.