Rh5DG198500

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
22101469 .. 22104589
3121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG198500.1

Sequence Viewer

Length: 978 bp
ATGTCAAAGAGTAAAGCAAGAGTTAAAGATAGGATTAGTGCATTACCTGATGAAGTTCTTTGTAAGGTTCTTTCCTGCCTTGATATACGATATGCTGTGAGGACCACCGTTTTGTCCCCGAGATGGAACAACCTATGGACCTCTCTTCCCAACTTATGCTTTTGCAATGATTATTTCATTGATGATGATGCTTTCATGACGTTTGTGGATCGTGTTCTTTTCTTTCGCGACTCCTCAGACATCAAAAAATTCTGTCTTGACTTCGACGAACCCAAGGAGGAAAATTTCTGTCGTATTGAAAGTTGGATATGTACAGCCATTAGGCGGAATGTTGTTGAACTTGATCTTTCTGTCAATTTATATCCAGACTATAAGACTTTTGAATTGCCTCGAAGTCTTTTCACTTGCAAAACACTAGAGGTGTTGAGCCTGAAGTCAAATTTTATTGCAAATCCTCCAAAATCTGGGTGTTTCCCAAGTCTCAAGGTACTCGAAGTTCTAGTTCGTTATCCTGACCTTGATAACTCGTCATTAGAACAGATTTTCGCTTACTGTCCTGTGCTCGAGGATTTGAGAATTGAAGGATCTCTTGGGGAGTGTTGTGATGTTTTGGATTTCAAAATCTCTGCACCTGAACTGAAAAGATTAACAATAGGATTGGACATTGACAGTTTTGATGATGAGAAGTATAATTTTTATATTAATGCTCCAAAACTAGAAGTCTTTAACCTCCCTGCGGGTGATTCGTCAGTGTTTTCATTTGAGATCAATGCAAAATCCCTCTTCAAAGCCAATATCAATCTTTCTAGCTGTTGTATACATTTTGACAGTACAAATGGACTTCTGGAAGCCATCTCCAATGTCAAACAGTTGTCTCTTTCAACTCGTAATTTGGAGGTAAGCATGTCTGCAACTTACTCTTTTACACTATATATGTTAGACAAGATTATAGAAACTACTAATTCAAGATTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

325

Amino Acids

37.16

Weight (kDa)

4.83

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 52 5e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 78 - 302 3.2e-12 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 100 - 241 9.5e-13 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 464
AccI GTMKAC 1 cut(s) 817
AccII CGCG 1 cut(s) 228
AciI CCGC 2 cut(s) 325, 737
AclWI GGATC 2 cut(s) 216, 592
AcsI RAATTY 3 cut(s) 248, 283, 439
AcuI CTGAAG 1 cut(s) 452
AfaI GTAC 3 cut(s) 313, 489, 832
AfiI CCNNNNNNNGG 4 cut(s) 123, 324, 464, 736
AgsI TTSAA 8 cut(s) 299, 338, 383, 581, 619, 787, 882, 966
AjuI GAANNNNNNNTTGG 2 cut(s) 573, 605
AluBI AGCT 1 cut(s) 810
AluI AGCT 1 cut(s) 810
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 2 cut(s) 485, 879
AlwI GGATC 2 cut(s) 216, 592
Ama87I CYCGRG 2 cut(s) 118, 563
ApoI RAATTY 3 cut(s) 248, 283, 439
ArsI GACNNNNNNTTYG 2 cut(s) 94, 126
AseI ATTAAT 1 cut(s) 702
AspS9I GGNCC 2 cut(s) 102, 138
AsuHPI GGTGA 1 cut(s) 752
AvaI CYCGRG 2 cut(s) 118, 563
AvaII GGWCC 2 cut(s) 102, 138
Bbv12I GWGCWC 1 cut(s) 564
BccI CCATC 2 cut(s) 117, 860
BcoDI GTCTC 2 cut(s) 485, 879
BfaI CTAG 4 cut(s) 416, 500, 716, 807
Bme18I GGWCC 2 cut(s) 102, 138
BmeT110I CYCGRG 2 cut(s) 118, 563
BmgT120I GGNCC 2 cut(s) 102, 138
BmsI GCATC 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 324, 464, 736
Bse3DI GCAATG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 273
BseLI CCNNNNNNNGG 4 cut(s) 123, 324, 464, 736
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 249
BseRI GAGGAG 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 612
Bsh1236I CGCG 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 564
BsiHKCI CYCGRG 2 cut(s) 118, 563
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 4 cut(s) 123, 324, 464, 736
BsmAI GTCTC 2 cut(s) 485, 879
BsmFI GGGAC 1 cut(s) 100
BsoBI CYCGRG 2 cut(s) 118, 563
Bsp1286I GDGCHC 1 cut(s) 564
Bsp1407I TGTACA 1 cut(s) 311
Bsp143I GATC 4 cut(s) 208, 343, 584, 765
Bsp68I TCGCGA 1 cut(s) 228
BspACI CCGC 2 cut(s) 325, 737
BspCNI CTCAG 1 cut(s) 248
BspFNI CGCG 1 cut(s) 228
BspHI TCATGA 1 cut(s) 195
BspPI GGATC 2 cut(s) 216, 592
BsrDI GCAATG 1 cut(s) 172
BsrGI TGTACA 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 4 cut(s) 208, 343, 584, 765
BssNAI GTATAC 1 cut(s) 818
BssT1I CCWWGG 1 cut(s) 273
Bst1107I GTATAC 1 cut(s) 818
Bst4CI ACNGT 5 cut(s) 109, 554, 671, 830, 870
Bst6I CTCTTC 2 cut(s) 150, 788
BstAUI TGTACA 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 235
BstFNI CGCG 1 cut(s) 228
BstKTI GATC 4 cut(s) 211, 346, 587, 768
BstMAI GTCTC 2 cut(s) 485, 879
BstMBI GATC 4 cut(s) 208, 343, 584, 765
BstNSI RCATGY 1 cut(s) 907
BstUI CGCG 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 584
BstYI RGATCY 1 cut(s) 584
BstZ17I GTATAC 1 cut(s) 818
BtsIMutI CAGTG 1 cut(s) 756
BtuMI TCGCGA 1 cut(s) 228
CciI TCATGA 1 cut(s) 195
Cfr13I GGNCC 2 cut(s) 102, 138
Csp6I GTAC 3 cut(s) 312, 488, 831
CviAII CATG 2 cut(s) 196, 904
CviJI RGCY 5 cut(s) 317, 429, 791, 810, 851
CviKI_1 RGCY 5 cut(s) 317, 429, 791, 810, 851
CviQI GTAC 3 cut(s) 312, 488, 831
DdeI CTNAG 1 cut(s) 235
DpnI GATC 4 cut(s) 210, 345, 586, 767
DpnII GATC 4 cut(s) 208, 343, 584, 765
Eam1104I CTCTTC 2 cut(s) 150, 788
EarI CTCTTC 2 cut(s) 150, 788
EciI GGCGGA 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 273
Eco47I GGWCC 2 cut(s) 102, 138
Eco57I CTGAAG 1 cut(s) 452
Eco88I CYCGRG 2 cut(s) 118, 563
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 199, 907
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FaqI GGGAC 1 cut(s) 100
FatI CATG 2 cut(s) 195, 903
FauI CCCGC 1 cut(s) 730
FblI GTMKAC 1 cut(s) 817
FspBI CTAG 4 cut(s) 416, 500, 716, 807
Hin1II CATG 2 cut(s) 199, 907
HinfI GANTC 2 cut(s) 230, 743
HphI GGTGA 1 cut(s) 752
Hpy166II GTNNAC 1 cut(s) 818
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 7 cut(s) 196, 227, 257, 365, 512, 845, 966
Hpy8I GTNNAC 1 cut(s) 818
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 575
HpyCH4III ACNGT 5 cut(s) 109, 554, 671, 830, 870
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 7 cut(s) 41, 165, 408, 449, 629, 773, 911
HpyF3I CTNAG 1 cut(s) 235
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 2 cut(s) 199, 907
Kzo9I GATC 4 cut(s) 208, 343, 584, 765
LmnI GCTCC 1 cut(s) 712
LweI GCATC 1 cut(s) 178
MaeI CTAG 4 cut(s) 416, 500, 716, 807
MaeII ACGT 1 cut(s) 200
MalI GATC 4 cut(s) 210, 345, 586, 767
MboI GATC 4 cut(s) 208, 343, 584, 765
MboII GAAGA 2 cut(s) 137, 775
MflI RGATCY 1 cut(s) 584
MhlI GDGCHC 1 cut(s) 564
MluCI AATT 9 cut(s) 248, 283, 355, 383, 439, 576, 691, 889, 961
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 284
MseI TTAA 4 cut(s) 24, 647, 702, 726
MvnI CGCG 1 cut(s) 228
NdeII GATC 4 cut(s) 208, 343, 584, 765
NlaIII CATG 2 cut(s) 199, 907
NruI TCGCGA 1 cut(s) 228
NspI RCATGY 1 cut(s) 907
PaeR7I CTCGAG 1 cut(s) 563
PagI TCATGA 1 cut(s) 195
PfeI GAWTC 1 cut(s) 743
PflMI CCANNNNNTGG 1 cut(s) 464
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PshBI ATTAAT 1 cut(s) 702
PspPI GGNCC 2 cut(s) 102, 138
PspXI VCTCGAGB 1 cut(s) 563
PsrI GAACNNNNNNTAC 2 cut(s) 480, 512
PsuI RGATCY 1 cut(s) 584
RruI TCGCGA 1 cut(s) 228
RsaI GTAC 3 cut(s) 313, 489, 832
RsaNI GTAC 3 cut(s) 312, 488, 831
SaqAI TTAA 4 cut(s) 24, 647, 702, 726
Sau3AI GATC 4 cut(s) 208, 343, 584, 765
Sau96I GGNCC 2 cut(s) 102, 138
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 1 cut(s) 564
SfaNI GCATC 1 cut(s) 178
Sfr274I CTCGAG 1 cut(s) 563
SinI GGWCC 2 cut(s) 102, 138
SlaI CTCGAG 1 cut(s) 563
SmlI CTYRAG 2 cut(s) 482, 563
SmoI CTYRAG 2 cut(s) 482, 563
Sse9I AATT 9 cut(s) 248, 283, 355, 383, 439, 576, 691, 889, 961
SsiI CCGC 2 cut(s) 325, 737
SspMI CTAG 4 cut(s) 416, 500, 716, 807
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 5 cut(s) 109, 554, 671, 830, 870
TaiI ACGT 1 cut(s) 203
TaqI TCGA 4 cut(s) 264, 391, 492, 564
TasI AATT 9 cut(s) 248, 283, 355, 383, 439, 576, 691, 889, 961
TatI WGTACW 2 cut(s) 311, 830
TfiI GAWTC 1 cut(s) 743
Tru1I TTAA 4 cut(s) 24, 647, 702, 726
Tru9I TTAA 4 cut(s) 24, 647, 702, 726
TscAI CASTG 1 cut(s) 756
TspDTI ATGAA 4 cut(s) 66, 166, 184, 747
TspRI CASTG 1 cut(s) 756
Van91I CCANNNNNTGG 1 cut(s) 464
VpaK11BI GGWCC 2 cut(s) 102, 138
VspI ATTAAT 1 cut(s) 702
XapI RAATTY 3 cut(s) 248, 283, 439
XceI RCATGY 1 cut(s) 907
XhoI CTCGAG 1 cut(s) 563
XmiI GTMKAC 1 cut(s) 817
XspI CTAG 4 cut(s) 416, 500, 716, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.