Rh5AG396500

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000079
Physical Location & Seq
Forward (+)
68708884 .. 68712480
3597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG396500.1

Sequence Viewer

Length: 1329 bp
ATGGCTAAAATGATTGTTCGAGCTCCGCACCCGGTTACCGTTCCGATCAACTACCCACGATATCGATCCCTGATTCGTGAGAGAGGTGTAGATAGGGATAGGATTAGTGACTTACCGGATGAGCTTATTTGTCACATACTTTCTTTTCTTCCAACAATATCCGCCGTAAGGACCACTCTTTTGTCTAAAAGATGGAACAAGTTGTGGACTTTTGTTCGCGATCTAGACTTTGACTTAAATAGAGATCGGCCCGATGGTACTTTTTCCTTTTTTGAGAGGTTTGTTGAATTTGTATTTCTCCGTCTTGTTTCACTAGACATTGGAAAATGTCGTCTTAGATATACCACTGCCAGCTCGGTCGAAGATGATTTTTCTCATTTTGATGATTGGATTTCTATTGCCGTCTCGCGCAATGTTGTTGAACTTGATCTTAGAATTTTTGATGTTCATGCTGGGCATCTTTGTCGCCTACCTAAAAGTATTTTCTGGTGCAAAACCCTCAAGGTTTTGAAACTGTGGATAGATTATATAGATATTCCTGATCCTCCTACAAAAGGGAGTTTCCCAAATCTCAAAATCTTGCATGTCACAGTTACAAATCCTGAAGACGAACTGGGAAAACTTCTTTCTTACTTCCCTGTGGTCGAAGATTTGAGCATACACGGACAGTTGGGGTACTCTTACATGTACTATCACAATATCAATCTCAAAGTCTCTTTTCCAGAACTGAAGACGTTGAAATTAAGTACGGAACGTGAGGAAAGGGCATACTACGAAATGGGACATGATTATGGTGGAACCCTAAATCAGTACCATTTTTGTGTCGATGCCCCAAAGCTTGAAAACCTTGATCTTGTACAGATTCCTTTGTCAAATTATATTTTAGAGAACCCAAAATCCGTAGTCAATGCCAGTATTGCTTTCAAATCCCTTGCTGAAGAAGAATGGTCTTCCTTTCCAGACCGTGCATTTCAGCTTCTTACAGGAATATCTAATGTTAAATGCCTCTCTCTTTCGGATCATCCTTTCGAGGAACTCTTATTTTATGCTCAGAGAACCGAAGGGGATTATCCAGAACTCCAATGGACTCCACCGGAGTTTGTGCCTAACTGTTTGTCATCACACCTCAAGACTATCTCCATAAGAGGATTCAAGGGTCTACAATTTGAAATGAAAGCAGTAAAATACATGTTATTGAATGGTTGTCATTTGAATAAGATGACAATTTATACAAGTATGTTAGAGAAGGAAGAGGAGTACTGCAGAGATCTTTTGAGCTTTCAAAGGGTAATGACTTGTCAAGTAGAATTTAGAGAGATGCAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

442

Amino Acids

51.67

Weight (kDa)

5.94

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 35 - 70 1e-09 F-box domain
F-box-like PF12937 35 - 68 1.2e-06 F-box-like
LRR_At5g56370 PF24758 128 - 237 8.4e-10 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 365 - 409 1.2e-14 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1159
AccII CGCG 2 cut(s) 219, 409
AciI CCGC 2 cut(s) 26, 162
AclWI GGATC 3 cut(s) 60, 536, 1026
AcsI RAATTY 3 cut(s) 287, 435, 1307
AcuI CTGAAG 3 cut(s) 624, 749, 957
AfaI GTAC 7 cut(s) 259, 677, 689, 748, 812, 858, 1259
AfiI CCNNNNNNNGG 2 cut(s) 168, 554
AflIII ACRYGT 2 cut(s) 684, 1188
AloI GAACNNNNNNTCC 2 cut(s) 881, 913
AluBI AGCT 6 cut(s) 23, 124, 354, 838, 976, 1278
AluI AGCT 6 cut(s) 23, 124, 354, 838, 976, 1278
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 2 cut(s) 409, 718
AlwI GGATC 3 cut(s) 60, 536, 1026
AoxI GGCC 1 cut(s) 248
ApoI RAATTY 3 cut(s) 287, 435, 1307
ArsI GACNNNNNNTTYG 2 cut(s) 163, 195
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 2 cut(s) 171, 249
AsuC2I CCSGG 1 cut(s) 32
AvaII GGWCC 1 cut(s) 171
BanII GRGCYC 1 cut(s) 25
BbsI GAAGAC 3 cut(s) 612, 737, 942
Bbv12I GWGCWC 1 cut(s) 25
BccI CCATC 2 cut(s) 186, 248
BceAI ACGGC 2 cut(s) 149, 386
BcgI CGANNNNNNTGC 2 cut(s) 446, 480
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 2 cut(s) 409, 718
BfaI CTAG 2 cut(s) 224, 314
BfmI CTRYAG 1 cut(s) 1261
BglII AGATCT 1 cut(s) 1267
BmcAI AGTACT 1 cut(s) 1259
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 171
BmgT120I GGNCC 2 cut(s) 171, 249
BmiI GGNNCC 1 cut(s) 799
BmrFI CCNGG 1 cut(s) 32
BmrI ACTGGG 1 cut(s) 623
BmsI GCATC 3 cut(s) 466, 817, 1308
BmuI ACTGGG 1 cut(s) 623
BpiI GAAGAC 3 cut(s) 612, 737, 942
BpuEI CTTGAG 2 cut(s) 485, 1112
BpuMI CCSGG 1 cut(s) 32
Bsa29I ATCGAT 1 cut(s) 64
BsaBI GATNNNNATC 1 cut(s) 64
BsaWI WCCGGW 2 cut(s) 115, 1093
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 554
Bse1I ACTGG 2 cut(s) 618, 912
Bse3DI GCAATG 1 cut(s) 418
Bse8I GATNNNNATC 1 cut(s) 64
BseCI ATCGAT 1 cut(s) 64
BseGI GGATG 2 cut(s) 124, 1021
BseJI GATNNNNATC 1 cut(s) 64
BseLI CCNNNNNNNGG 2 cut(s) 168, 554
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 1064
BseNI ACTGG 2 cut(s) 618, 912
BseRI GAGGAG 1 cut(s) 1268
BseYI CCCAGC 1 cut(s) 452
Bsh1236I CGCG 2 cut(s) 219, 409
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 1 cut(s) 250
BshVI ATCGAT 1 cut(s) 64
BsiEI CGRYCG 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 3 cut(s) 32, 116, 1094
BslFI GGGAC 1 cut(s) 795
BslI CCNNNNNNNGG 2 cut(s) 168, 554
BsmAI GTCTC 2 cut(s) 409, 718
BsmBI CGTCTC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 795
BsnI GGCC 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 25
Bsp1407I TGTACA 1 cut(s) 856
Bsp143I GATC 9 cut(s) 45, 65, 220, 244, 427, 541, 850, 1018, 1267
Bsp68I TCGCGA 1 cut(s) 219
BspACI CCGC 2 cut(s) 26, 162
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 1 cut(s) 1063
BspDI ATCGAT 1 cut(s) 64
BspFNI CGCG 2 cut(s) 219, 409
BspLI GGNNCC 1 cut(s) 799
BspMAI CTGCAG 1 cut(s) 1265
BspPI GGATC 3 cut(s) 60, 536, 1026
BsrDI GCAATG 1 cut(s) 418
BsrGI TGTACA 1 cut(s) 856
BsrI ACTGG 2 cut(s) 618, 912
BssMI GATC 9 cut(s) 45, 65, 220, 244, 427, 541, 850, 1018, 1267
Bst4CI ACNGT 6 cut(s) 40, 516, 592, 669, 965, 1112
Bst6I CTCTTC 1 cut(s) 1245
BstAUI TGTACA 1 cut(s) 856
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 3 cut(s) 335, 431, 1050
BstEII GGTNACC 1 cut(s) 34
BstENI CCTNNNNNAGG 1 cut(s) 552
BstF5I GGATG 2 cut(s) 124, 1021
BstFNI CGCG 2 cut(s) 219, 409
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 9 cut(s) 48, 68, 223, 247, 430, 544, 853, 1021, 1270
BstMAI GTCTC 2 cut(s) 409, 718
BstMBI GATC 9 cut(s) 45, 65, 220, 244, 427, 541, 850, 1018, 1267
BstMCI CGRYCG 1 cut(s) 360
BstMWI GCNNNNNNNGC 1 cut(s) 917
BstNSI RCATGY 3 cut(s) 587, 688, 1192
BstPI GGTNACC 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 1261
BstUI CGCG 2 cut(s) 219, 409
BstV2I GAAGAC 3 cut(s) 612, 737, 942
BstX2I RGATCY 1 cut(s) 1267
BstYI RGATCY 1 cut(s) 1267
Bsu15I ATCGAT 1 cut(s) 64
BsuRI GGCC 1 cut(s) 250
BsuTUI ATCGAT 1 cut(s) 64
BtsCI GGATG 2 cut(s) 124, 1021
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 345
BtuMI TCGCGA 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 352
CfoI GCGC 1 cut(s) 411
Cfr13I GGNCC 2 cut(s) 171, 249
ClaI ATCGAT 1 cut(s) 64
Csp6I GTAC 7 cut(s) 258, 676, 688, 747, 811, 857, 1258
CviAII CATG 5 cut(s) 449, 584, 685, 785, 1189
CviJI RGCY 8 cut(s) 5, 23, 124, 250, 354, 838, 976, 1278
CviKI_1 RGCY 8 cut(s) 5, 23, 124, 250, 354, 838, 976, 1278
CviQI GTAC 7 cut(s) 258, 676, 688, 747, 811, 857, 1258
DdeI CTNAG 3 cut(s) 335, 431, 1050
DpnI GATC 9 cut(s) 47, 67, 222, 246, 429, 543, 852, 1020, 1269
DpnII GATC 9 cut(s) 45, 65, 220, 244, 427, 541, 850, 1018, 1267
Eam1104I CTCTTC 1 cut(s) 1245
EarI CTCTTC 1 cut(s) 1245
EciI GGCGGA 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco32I GATATC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 171
Eco53kI GAGCTC 1 cut(s) 23
Eco57I CTGAAG 3 cut(s) 624, 749, 957
Eco91I GGTNACC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 23
EcoNI CCTNNNNNAGG 1 cut(s) 552
EcoO65I GGTNACC 1 cut(s) 34
EcoRV GATATC 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 25
Esp3I CGTCTC 1 cut(s) 409
FaeI CATG 5 cut(s) 452, 587, 688, 788, 1192
FaqI GGGAC 1 cut(s) 795
FatI CATG 5 cut(s) 448, 583, 684, 784, 1188
FblI GTMKAC 1 cut(s) 1159
FokI GGATG 2 cut(s) 131, 1008
FriOI GRGCYC 1 cut(s) 25
FspBI CTAG 2 cut(s) 224, 314
GlaI GCGC 1 cut(s) 410
GsaI CCCAGC 1 cut(s) 456
HaeIII GGCC 1 cut(s) 250
HapII CCGG 3 cut(s) 32, 116, 1094
HhaI GCGC 1 cut(s) 411
Hin1II CATG 5 cut(s) 452, 587, 688, 788, 1192
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 836
HinfI GANTC 4 cut(s) 73, 862, 1087, 1149
HpaII CCGG 3 cut(s) 32, 116, 1094
Hpy166II GTNNAC 2 cut(s) 207, 1160
Hpy188I TCNGA 3 cut(s) 45, 1018, 1053
Hpy188III TCNNGA 9 cut(s) 77, 218, 224, 539, 602, 722, 959, 1073, 1129
Hpy8I GTNNAC 2 cut(s) 207, 1160
HpyAV CCTTC 2 cut(s) 1055, 1240
HpyCH4III ACNGT 6 cut(s) 40, 516, 592, 669, 965, 1112
HpyCH4IV ACGT 2 cut(s) 734, 754
HpyCH4V TGCA 5 cut(s) 492, 583, 968, 1263, 1321
HpyF10VI GCNNNNNNNGC 1 cut(s) 917
HpyF3I CTNAG 3 cut(s) 335, 431, 1050
HpySE526I ACGT 2 cut(s) 734, 754
Hsp92II CATG 5 cut(s) 452, 587, 688, 788, 1192
HspAI GCGC 1 cut(s) 409
Kzo9I GATC 9 cut(s) 45, 65, 220, 244, 427, 541, 850, 1018, 1267
LmnI GCTCC 1 cut(s) 28
LweI GCATC 3 cut(s) 466, 817, 1308
MaeI CTAG 2 cut(s) 224, 314
MaeII ACGT 2 cut(s) 734, 754
MaeIII GTNAC 5 cut(s) 34, 107, 131, 586, 592
MalI GATC 9 cut(s) 47, 67, 222, 246, 429, 543, 852, 1020, 1269
MboI GATC 9 cut(s) 45, 65, 220, 244, 427, 541, 850, 1018, 1267
MboII GAAGA 9 cut(s) 140, 374, 617, 659, 742, 942, 950, 953, 1262
MflI RGATCY 1 cut(s) 1267
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 8 cut(s) 287, 435, 740, 874, 1163, 1224, 1307, 1322
MlyI GAGTC 1 cut(s) 1081
MmeI TCCRAC 1 cut(s) 176
MseI TTAA 3 cut(s) 236, 743, 999
MslI CAYNNNNRTG 3 cut(s) 381, 789, 819
MspI CCGG 3 cut(s) 32, 116, 1094
MspR9I CCNGG 1 cut(s) 32
MvnI CGCG 2 cut(s) 219, 409
MwoI GCNNNNNNNGC 1 cut(s) 917
NciI CCSGG 1 cut(s) 32
NdeII GATC 9 cut(s) 45, 65, 220, 244, 427, 541, 850, 1018, 1267
NlaIII CATG 5 cut(s) 452, 587, 688, 788, 1192
NlaIV GGNNCC 1 cut(s) 799
NmuCI GTSAC 3 cut(s) 107, 131, 586
NruI TCGCGA 1 cut(s) 219
NspI RCATGY 3 cut(s) 587, 688, 1192
PciI ACATGT 2 cut(s) 684, 1188
PfeI GAWTC 3 cut(s) 73, 862, 1149
PleI GAGTC 1 cut(s) 1081
PpsI GAGTC 1 cut(s) 1081
PscI ACATGT 2 cut(s) 684, 1188
Psp124BI GAGCTC 1 cut(s) 25
PspEI GGTNACC 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 452
PspN4I GGNNCC 1 cut(s) 799
PspPI GGNCC 2 cut(s) 171, 249
PstI CTGCAG 1 cut(s) 1265
PsuI RGATCY 1 cut(s) 1267
RruI TCGCGA 1 cut(s) 219
RsaI GTAC 7 cut(s) 259, 677, 689, 748, 812, 858, 1259
RsaNI GTAC 7 cut(s) 258, 676, 688, 747, 811, 857, 1258
RseI CAYNNNNRTG 3 cut(s) 381, 789, 819
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 3 cut(s) 236, 743, 999
Sau3AI GATC 9 cut(s) 45, 65, 220, 244, 427, 541, 850, 1018, 1267
Sau96I GGNCC 2 cut(s) 171, 249
ScaI AGTACT 1 cut(s) 1259
SchI GAGTC 1 cut(s) 1081
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 1 cut(s) 25
SfaNI GCATC 3 cut(s) 466, 817, 1308
SfcI CTRYAG 1 cut(s) 1261
SinI GGWCC 1 cut(s) 171
SmiMI CAYNNNNRTG 3 cut(s) 381, 789, 819
SmlI CTYRAG 2 cut(s) 500, 1127
SmoI CTYRAG 2 cut(s) 500, 1127
Sse9I AATT 8 cut(s) 287, 435, 740, 874, 1163, 1224, 1307, 1322
SsiI CCGC 2 cut(s) 26, 162
SspMI CTAG 2 cut(s) 224, 314
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 6 cut(s) 40, 516, 592, 669, 965, 1112
TaiI ACGT 2 cut(s) 737, 757
TaqI TCGA 6 cut(s) 19, 64, 360, 645, 825, 1029
TaqII GACCGA 1 cut(s) 346
TasI AATT 8 cut(s) 287, 435, 740, 874, 1163, 1224, 1307, 1322
TatI WGTACW 3 cut(s) 687, 856, 1257
TfiI GAWTC 3 cut(s) 73, 862, 1149
Tru1I TTAA 3 cut(s) 236, 743, 999
Tru9I TTAA 3 cut(s) 236, 743, 999
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 3 cut(s) 107, 131, 586
Tsp45I GTSAC 3 cut(s) 107, 131, 586
TspDTI ATGAA 2 cut(s) 437, 1187
TspGWI ACGGA 4 cut(s) 290, 678, 764, 889
TspRI CASTG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 171
XagI CCTNNNNNAGG 1 cut(s) 552
XapI RAATTY 3 cut(s) 287, 435, 1307
XbaI TCTAGA 1 cut(s) 223
XceI RCATGY 3 cut(s) 587, 688, 1192
XcmI CCANNNNNNNNNTGG 1 cut(s) 1080
XmiI GTMKAC 1 cut(s) 1159
XspI CTAG 2 cut(s) 224, 314
ZrmI AGTACT 1 cut(s) 1259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.