RchiOBHm_Chr7g0197861

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
15680757 .. 15681410
654 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17699

Sequence Viewer

Length: 507 bp
ATGATAGCTGCTGCAAATCATTTTGAGGATTATGAAAATTATGGGTGCCAAATTTTTGTCAGTGTTGATGCTCCAAATCTTGAAGAGTTAGACATCTACTATGATTTTCTGGTTAGCTGTTCTTTGAAGAATACCAAATGTCTGAGGAAAGTCAAGATAGATTTCTTAGATGTGAAACAGCTTGTGGACCGTGAATATTTTCTTGGCCTCGCTGATCGCATATGCCAGCTTTTTGCAGATATTTGTAATGCTAAATACTTGACAGTTTCAGCTCCAATTTTGGTCGCTCTTGGGGATGGATATCAACGTCTGCCTACATTTAATGATTTGAACCATTTGGAGCTGCAACTTCAAACTTGTCGATGTTTGCAATTGCTGACAACTTTGCTCAAGATATCACCAAATTTGGAACATCTCAAGATATCACCGAATAGGAAACATCTTCGGTGTGCAAATGTAAGTATATCTGGAATGTCTCTAGTGACAAATGATACCGGTATAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

168

Amino Acids

19.05

Weight (kDa)

5.76

Isoelectric Point (pI)

26.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 45
AcsI RAATTY 2 cut(s) 51, 403
AgeI ACCGGT 1 cut(s) 494
AgsI TTSAA 4 cut(s) 83, 127, 331, 353
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 6 cut(s) 8, 117, 181, 229, 272, 343
AluI AGCT 6 cut(s) 8, 117, 181, 229, 272, 343
Alw26I GTCTC 1 cut(s) 480
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 3 cut(s) 8, 11, 343
ApoI RAATTY 2 cut(s) 51, 403
AsiGI ACCGGT 1 cut(s) 494
Asp700I GAANNNNTTC 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 2 cut(s) 390, 417
AvaII GGWCC 1 cut(s) 187
BanI GGYRCC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 330
BccI CCATC 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 480
BfaI CTAG 1 cut(s) 479
BisI GCNGC 3 cut(s) 9, 12, 344
BlsI GCNGC 3 cut(s) 10, 13, 345
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 47
BmsI GCATC 1 cut(s) 58
BpuEI CTTGAG 2 cut(s) 374, 401
BsaBI GATNNNNATC 1 cut(s) 300
BsaWI WCCGGW 1 cut(s) 494
Bse118I RCCGGY 1 cut(s) 494
Bse8I GATNNNNATC 1 cut(s) 300
BseGI GGATG 1 cut(s) 301
BseJI GATNNNNATC 1 cut(s) 300
BseMII CTCAG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 330
BshFI GGCC 1 cut(s) 207
BshNI GGYRCC 1 cut(s) 45
BshTI ACCGGT 1 cut(s) 494
BsiSI CCGG 1 cut(s) 495
BsmAI GTCTC 1 cut(s) 480
BsnI GGCC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 214
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 494
BssAI RCCGGY 1 cut(s) 494
BssMI GATC 1 cut(s) 214
Bst4CI ACNGT 2 cut(s) 191, 265
Bst6I CTCTTC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 2 cut(s) 143, 166
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 480
BstMBI GATC 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 330
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 494
Cfr13I GGNCC 1 cut(s) 187
CspAI ACCGGT 1 cut(s) 494
CviJI RGCY 7 cut(s) 8, 117, 181, 207, 229, 272, 343
CviKI_1 RGCY 7 cut(s) 8, 117, 181, 207, 229, 272, 343
DdeI CTNAG 2 cut(s) 143, 166
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco32I GATATC 3 cut(s) 302, 396, 423
Eco47I GGWCC 1 cut(s) 187
EcoRV GATATC 3 cut(s) 302, 396, 423
FaiI YATR 7 cut(s) 33, 42, 102, 221, 223, 464, 500
FauNDI CATATG 1 cut(s) 221
Fnu4HI GCNGC 3 cut(s) 9, 12, 344
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 3 cut(s) 9, 12, 344
FspBI CTAG 1 cut(s) 479
GluI GCNGC 3 cut(s) 9, 12, 344
HaeIII GGCC 1 cut(s) 207
HapII CCGG 1 cut(s) 495
HpaII CCGG 1 cut(s) 495
HphI GGTGA 2 cut(s) 390, 417
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 5 cut(s) 80, 154, 391, 418, 468
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4III ACNGT 2 cut(s) 191, 265
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 5 cut(s) 14, 236, 346, 370, 452
HpyF3I CTNAG 2 cut(s) 143, 166
HpySE526I ACGT 1 cut(s) 307
Kzo9I GATC 1 cut(s) 214
LmnI GCTCC 3 cut(s) 76, 277, 340
LpnPI CCDG 3 cut(s) 95, 239, 453
Lsp1109I GCAGC 1 cut(s) 330
LweI GCATC 1 cut(s) 58
MaeI CTAG 1 cut(s) 479
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 1 cut(s) 481
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 3 cut(s) 95, 139, 434
MfeI CAATTG 1 cut(s) 371
MluCI AATT 6 cut(s) 37, 51, 276, 371, 403, 501
MnlI CCTC 3 cut(s) 19, 138, 218
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 1 cut(s) 321
MspI CCGG 1 cut(s) 495
MunI CAATTG 1 cut(s) 371
NdeI CATATG 1 cut(s) 221
NdeII GATC 1 cut(s) 214
NlaIV GGNNCC 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 481
PdmI GAANNNNTTC 1 cut(s) 198
PinAI ACCGGT 1 cut(s) 494
PkrI GCNGC 3 cut(s) 10, 13, 345
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 3 cut(s) 9, 12, 344
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 1 cut(s) 187
SetI ASST 7 cut(s) 10, 119, 183, 231, 274, 310, 345
SfaNI GCATC 1 cut(s) 58
SinI GGWCC 1 cut(s) 187
SmlI CTYRAG 2 cut(s) 389, 416
SmoI CTYRAG 2 cut(s) 389, 416
Sse9I AATT 6 cut(s) 37, 51, 276, 371, 403, 501
SspI AATATT 1 cut(s) 197
SspMI CTAG 1 cut(s) 479
TaaI ACNGT 2 cut(s) 191, 265
TaiI ACGT 1 cut(s) 310
TaqI TCGA 1 cut(s) 361
TasI AATT 6 cut(s) 37, 51, 276, 371, 403, 501
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 3 cut(s) 8, 11, 343
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 1 cut(s) 48
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 2 cut(s) 51, 403
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.