Rh1DG051800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000079
Physical Location & Seq
Reverse (-)
8308869 .. 8311801
2933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG051800.1

Sequence Viewer

Length: 1713 bp
ATGGGTTCAAACTGGAAGCTTTTTAAAGCATGTATTGAAGATAGGATCAGTGGATTGCCAGATGCAATTCTTTTCCACATTATTTCATTCCTTGAAACAAGAGATGCTGTAAAGACCTGCCTATTATCTCATAGATGGAACAATGTGTGGACTTATGTTCCGAATCTGGAGGTATATGTATCTTCACCAAAATATGACTCAGATGAACATGTGGGTCAAGCCGGGTTTGTTGATCGAGTACTTCTGTTCCGTAACTTGTCAAACATTCATAAATTCCGTCTTATCTGCCTTGGAATCGAAGATTATTTTGATCATATTGATGCTTGGGTTTGCACTGCCATTAGGCATAATGTTGTAGAACTTGAACTTGATCTTTATACCACACCCTCAAATTCCTACACAAGGTGTCTTAAGTTGCCTACAAGCATTTTCATTTGCAAGACACTGGTAGTTTTGAAGCTGATACTAACAGATCATGTTATTGCTATCCCTCCTAACTCAAGTTGTTTTCCAAGTCTCAAGTACCTTGATGTTCAGCTATATTATCCTGTTGCTGTCGACTCAGTGTACAAAATTTTTGTTAATGCTAATGCTCCAAACCTTGAAAAGTTCAACGTCAAGTACCTTTTGGCAAGCTATTCTTTGAAGAATGTAAAATCGCTAAGCACAGTTGAGCTTAAATTCAAAGGTCTGAATGCGGGAGAGAACCTATATTTTGCTGGTCGTATACATAAGCTCTTTGCAGAAATTGTGAATGTCAAATATTTGTCAATTTTAGCTTCAATTGTGGGGGATCCTGACATTGCATATCAATATCCTATGCCTAGGTTCAATAATTTGAAACAGTTGGAGCTACGATGGGGGACTGATGAGAAGGCCATCGTCTGCTTACTGGGTCATAGAAATGCAGCTCAAAGAAAAGAAATCAGGGTCGTTTATAAGCAACTTTACCAAGAAGATATTATCAACGCCTTGAGTCTGAGCTCTGGTGATTTTGAGAGAGCGGTGTACCGTTGGACATTGGATCCAGCTGATTGTGATGCTGTTTTGGCTAATCTGGCCATCAAGAAACCGAGTGCAACTACAATGTCATCATCGAAATCTTCAGTGTTCGGTGTCCTGAAGAGCGTAAGAAAAGCTTACCAGCTTCGTTACAAGTGCTCTTTGGAAGAAGATCTAGCTCAACATACCAATGGTAATATCTGCAAGCTTTTGGTTGCTTTGGTGACTGCTTACCGCTGTGACGGTAATGAGATTAATGTAAAGTTGGCAAATTCAGAAGCTAATATTCTTCAGGATGCTATCAAAGACAAGTGTTTTAATCATGAAGAAATTATTAGAATCCTGAGTACACGAAGCAAGACACAGCTCATGGCAACATTCAACAAATACAGAGATGACTATGGCAACTCTATCAGCAAGAATTTCTTGGAGGATGGAGCTAATGATTTCCAGAAGGCATTGCATACTGCCGTTCGATGCCTCAATGACCACAAGAAGTGCTTTGAGAAGGTACTTCGCAAGGCGATCATAGGGACAGGGACCAATGAGGATGCCCTCACTCGTGTGATTGTTACAAGGGCAGAGAAGGACTTGAAGGACATCATGGAGGTTTACTACAAGAAGAACAGTGTTCCTCTTGAACAGGCTGTGGCCCAAGACACTTCAGGGGACTACAAGACCTTCCTCCTTACTCTGTTGGGAAAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

570

Amino Acids

64.75

Weight (kDa)

8.6

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 16 - 54 1.1e-06 F-box domain
Annexin PF00191 280 - 336 1.3e-11 Annexin
Annexin PF00191 427 - 489 5.4e-12 Annexin
Annexin PF00191 504 - 566 4e-16 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 939
Acc36I ACCTGC 1 cut(s) 125
AccBSI CCGCTC 1 cut(s) 1004
AccI GTMKAC 2 cut(s) 558, 727
AciI CCGC 3 cut(s) 698, 1004, 1237
AclWI GGATC 5 cut(s) 53, 788, 801, 1019, 1032
AcoI YGGCCR 1 cut(s) 1059
AcsI RAATTY 6 cut(s) 272, 391, 573, 680, 1273, 1423
AcuI CTGAAG 4 cut(s) 1089, 1142, 1277, 1650
AdeI CACNNNGTG 1 cut(s) 405
AfaI GTAC 7 cut(s) 240, 524, 569, 623, 1010, 1351, 1515
AfiI CCNNNNNNNGG 1 cut(s) 402
AflII CTTAAG 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 208
AleI CACNNNNGTG 1 cut(s) 1565
Alw21I GWGCWC 2 cut(s) 986, 1163
Alw26I GTCTC 1 cut(s) 521
AlwI GGATC 5 cut(s) 53, 788, 801, 1019, 1032
AoxI GGCC 3 cut(s) 876, 1059, 1653
ApeKI GCWGC 1 cut(s) 908
ApoI RAATTY 6 cut(s) 272, 391, 573, 680, 1273, 1423
AseI ATTAAT 1 cut(s) 1257
AspA2I CCTAGG 1 cut(s) 824
AspS9I GGNCC 2 cut(s) 1542, 1654
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 3 cut(s) 177, 1001, 1237
AvaII GGWCC 1 cut(s) 1542
AvrII CCTAGG 1 cut(s) 824
BalI TGGCCA 1 cut(s) 1061
BamHI GGATCC 2 cut(s) 793, 1024
BanII GRGCYC 1 cut(s) 986
BauI CACGAG 1 cut(s) 1563
Bbv12I GWGCWC 2 cut(s) 986, 1163
BbvI GCAGC 1 cut(s) 920
BccI CCATC 5 cut(s) 129, 852, 887, 1070, 1430
BceAI ACGGC 1 cut(s) 1457
BclI TGATCA 1 cut(s) 310
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 521
BfaI CTAG 2 cut(s) 825, 1178
BfrI CTTAAG 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 125
BglII AGATCT 1 cut(s) 1174
BisI GCNGC 1 cut(s) 909
BlnI CCTAGG 1 cut(s) 824
BlpI GCTNAGC 1 cut(s) 662
BlsI GCNGC 1 cut(s) 910
BmcAI AGTACT 1 cut(s) 240
Bme1390I CCNGG 1 cut(s) 223
Bme18I GGWCC 1 cut(s) 1542
BmgT120I GGNCC 2 cut(s) 1542, 1654
BmiI GGNNCC 3 cut(s) 795, 1026, 1543
BmrFI CCNGG 1 cut(s) 223
BmrI ACTGGG 1 cut(s) 902
BmsI GCATC 7 cut(s) 52, 94, 310, 1030, 1288, 1469, 1543
BmuI ACTGGG 1 cut(s) 902
BpmI CTGGAG 1 cut(s) 188
Bpu1102I GCTNAGC 1 cut(s) 662
BpuEI CTTGAG 3 cut(s) 484, 503, 994
BpuMI CCSGG 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 289, 824
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse1I ACTGG 3 cut(s) 17, 450, 897
Bse3DI GCAATG 2 cut(s) 801, 1460
BseDI CCNNGG 2 cut(s) 289, 824
BseGI GGATG 3 cut(s) 1303, 1441, 1558
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMI GCAATG 2 cut(s) 801, 1460
BseMII CTCAG 4 cut(s) 213, 576, 971, 1337
BseNI ACTGG 3 cut(s) 17, 450, 897
BseXI GCAGC 1 cut(s) 920
BshFI GGCC 3 cut(s) 878, 1061, 1655
BsiHKAI GWGCWC 2 cut(s) 986, 1163
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 4 cut(s) 877, 1549, 1555, 1685
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 1 cut(s) 521
BsmFI GGGAC 4 cut(s) 877, 1549, 1555, 1685
BsmI GAATGC 1 cut(s) 700
BsnI GGCC 3 cut(s) 878, 1061, 1655
Bsp1286I GDGCHC 2 cut(s) 986, 1163
Bsp1407I TGTACA 1 cut(s) 567
Bsp143I GATC 9 cut(s) 45, 232, 310, 370, 472, 793, 1024, 1174, 1527
Bsp1720I GCTNAGC 1 cut(s) 662
BspACI CCGC 3 cut(s) 698, 1004, 1237
BspANI GGCC 3 cut(s) 878, 1061, 1655
BspCNI CTCAG 4 cut(s) 212, 575, 972, 1338
BspHI TCATGA 1 cut(s) 1324
BspLI GGNNCC 3 cut(s) 795, 1026, 1543
BspMI ACCTGC 1 cut(s) 125
BspPI GGATC 5 cut(s) 53, 788, 801, 1019, 1032
BspQI GCTCTTC 1 cut(s) 1118
BspTI CTTAAG 1 cut(s) 410
BsrBI CCGCTC 1 cut(s) 1004
BsrDI GCAATG 2 cut(s) 801, 1460
BsrGI TGTACA 1 cut(s) 567
BsrI ACTGG 3 cut(s) 17, 450, 897
BssECI CCNNGG 2 cut(s) 289, 824
BssMI GATC 9 cut(s) 45, 232, 310, 370, 472, 793, 1024, 1174, 1527
BssNAI GTATAC 1 cut(s) 728
BssSI CACGAG 1 cut(s) 1563
BssT1I CCWWGG 2 cut(s) 289, 824
Bst1107I GTATAC 1 cut(s) 728
Bst2BI CACGAG 1 cut(s) 1563
Bst4CI ACNGT 5 cut(s) 670, 846, 1013, 1247, 1631
Bst6I CTCTTC 1 cut(s) 1118
BstAFI CTTAAG 1 cut(s) 410
BstAUI TGTACA 1 cut(s) 567
BstC8I GCNNGC 2 cut(s) 634, 1208
BstDEI CTNAG 5 cut(s) 199, 562, 662, 980, 1346
BstENI CCTNNNNNAGG 1 cut(s) 400
BstF5I GGATG 3 cut(s) 1303, 1441, 1558
BstKTI GATC 9 cut(s) 48, 235, 313, 373, 475, 796, 1027, 1177, 1530
BstMAI GTCTC 1 cut(s) 521
BstMBI GATC 9 cut(s) 45, 232, 310, 370, 472, 793, 1024, 1174, 1527
BstMWI GCNNNNNNNGC 2 cut(s) 1049, 1058
BstNSI RCATGY 2 cut(s) 33, 212
BstSCI CCNGG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 920
BstX2I RGATCY 3 cut(s) 793, 1024, 1174
BstYI RGATCY 3 cut(s) 793, 1024, 1174
BstZ17I GTATAC 1 cut(s) 728
BsuRI GGCC 3 cut(s) 878, 1061, 1655
BtsCI GGATG 3 cut(s) 1303, 1441, 1558
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 6 cut(s) 55, 333, 443, 570, 1113, 1636
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 2 cut(s) 634, 1208
CciI TCATGA 1 cut(s) 1324
Cfr13I GGNCC 2 cut(s) 1542, 1654
Csp6I GTAC 7 cut(s) 239, 523, 568, 622, 1009, 1350, 1514
CviAII CATG 6 cut(s) 30, 209, 476, 1325, 1372, 1606
CviQI GTAC 7 cut(s) 239, 523, 568, 622, 1009, 1350, 1514
DdeI CTNAG 5 cut(s) 199, 562, 662, 980, 1346
DpnI GATC 9 cut(s) 47, 234, 312, 372, 474, 795, 1026, 1176, 1529
DpnII GATC 9 cut(s) 45, 232, 310, 370, 472, 793, 1024, 1174, 1527
DraI TTTAAA 1 cut(s) 25
DraIII CACNNNGTG 1 cut(s) 405
EaeI YGGCCR 1 cut(s) 1059
Eam1104I CTCTTC 1 cut(s) 1118
EarI CTCTTC 1 cut(s) 1118
Ecl136II GAGCTC 1 cut(s) 984
Eco130I CCWWGG 2 cut(s) 289, 824
Eco24I GRGCYC 1 cut(s) 986
Eco47I GGWCC 1 cut(s) 1542
Eco53kI GAGCTC 1 cut(s) 984
Eco57I CTGAAG 4 cut(s) 1089, 1142, 1277, 1650
EcoICRI GAGCTC 1 cut(s) 984
EcoNI CCTNNNNNAGG 1 cut(s) 400
EcoT14I CCWWGG 2 cut(s) 289, 824
EcoT38I GRGCYC 1 cut(s) 986
ErhI CCWWGG 2 cut(s) 289, 824
FaeI CATG 6 cut(s) 33, 212, 479, 1328, 1375, 1609
FalI AAGNNNNNCTT 8 cut(s) 625, 657, 1123, 1155, 1412, 1444, 1487, 1519
FaqI GGGAC 4 cut(s) 877, 1549, 1555, 1685
FatI CATG 6 cut(s) 29, 208, 475, 1324, 1371, 1605
FauI CCCGC 1 cut(s) 691
FbaI TGATCA 1 cut(s) 310
FblI GTMKAC 2 cut(s) 558, 727
Fnu4HI GCNGC 1 cut(s) 909
FokI GGATG 3 cut(s) 1310, 1448, 1565
FriOI GRGCYC 1 cut(s) 986
Fsp4HI GCNGC 1 cut(s) 909
FspBI CTAG 2 cut(s) 825, 1178
GluI GCNGC 1 cut(s) 909
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 3 cut(s) 878, 1061, 1655
HapII CCGG 1 cut(s) 222
Hin1II CATG 6 cut(s) 33, 212, 479, 1328, 1375, 1609
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HindIII AAGCTT 3 cut(s) 17, 1137, 1208
HinfI GANTC 6 cut(s) 163, 197, 294, 560, 976, 1341
HpaII CCGG 1 cut(s) 222
HphI GGTGA 3 cut(s) 177, 1001, 1237
Hpy166II GTNNAC 7 cut(s) 150, 559, 568, 728, 1009, 1352, 1615
Hpy188I TCNGA 5 cut(s) 162, 202, 693, 981, 1279
Hpy188III TCNNGA 9 cut(s) 167, 797, 1066, 1120, 1295, 1325, 1345, 1453, 1640
Hpy8I GTNNAC 7 cut(s) 150, 559, 568, 728, 1009, 1352, 1615
HpyAV CCTTC 6 cut(s) 868, 1450, 1504, 1582, 1591, 1693
HpyCH4III ACNGT 5 cut(s) 670, 846, 1013, 1247, 1631
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 9 cut(s) 65, 333, 438, 743, 806, 908, 1079, 1206, 1465
HpyF10VI GCNNNNNNNGC 2 cut(s) 1049, 1058
HpyF3I CTNAG 5 cut(s) 199, 562, 662, 980, 1346
HpySE526I ACGT 1 cut(s) 615
Hsp92II CATG 6 cut(s) 33, 212, 479, 1328, 1375, 1609
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 9 cut(s) 45, 232, 310, 370, 472, 793, 1024, 1174, 1527
LguI GCTCTTC 1 cut(s) 1118
LmnI GCTCC 3 cut(s) 598, 850, 1439
Lsp1109I GCAGC 1 cut(s) 920
LweI GCATC 7 cut(s) 52, 94, 310, 1030, 1288, 1469, 1543
MaeI CTAG 2 cut(s) 825, 1178
MaeII ACGT 1 cut(s) 615
MaeIII GTNAC 5 cut(s) 251, 1151, 1225, 1241, 1573
MalI GATC 9 cut(s) 47, 234, 312, 372, 474, 795, 1026, 1176, 1529
MbiI CCGCTC 1 cut(s) 1004
MboI GATC 9 cut(s) 45, 232, 310, 370, 472, 793, 1024, 1174, 1527
MfeI CAATTG 1 cut(s) 783
MflI RGATCY 3 cut(s) 793, 1024, 1174
MhlI GDGCHC 2 cut(s) 986, 1163
MlsI TGGCCA 1 cut(s) 1061
MluNI TGGCCA 1 cut(s) 1061
MlyI GAGTC 3 cut(s) 191, 554, 985
MmeI TCCRAC 2 cut(s) 828, 995
Mox20I TGGCCA 1 cut(s) 1061
MscI TGGCCA 1 cut(s) 1061
MseI TTAA 6 cut(s) 24, 411, 582, 678, 1257, 1320
MslI CAYNNNNRTG 4 cut(s) 318, 903, 1191, 1565
Msp20I TGGCCA 1 cut(s) 1061
MspA1I CMGCKG 2 cut(s) 1031, 1239
MspCI CTTAAG 1 cut(s) 410
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 223
MunI CAATTG 1 cut(s) 783
Mva1269I GAATGC 1 cut(s) 700
MwoI GCNNNNNNNGC 2 cut(s) 1049, 1058
NciI CCSGG 1 cut(s) 223
NdeII GATC 9 cut(s) 45, 232, 310, 370, 472, 793, 1024, 1174, 1527
NlaIII CATG 6 cut(s) 33, 212, 479, 1328, 1375, 1609
NlaIV GGNNCC 3 cut(s) 795, 1026, 1543
NmuCI GTSAC 2 cut(s) 1225, 1241
NspI RCATGY 2 cut(s) 33, 212
OliI CACNNNNGTG 1 cut(s) 1565
PagI TCATGA 1 cut(s) 1324
PciI ACATGT 1 cut(s) 208
PciSI GCTCTTC 1 cut(s) 1118
PctI GAATGC 1 cut(s) 700
PfeI GAWTC 3 cut(s) 163, 294, 1341
PkrI GCNGC 1 cut(s) 910
PleI GAGTC 3 cut(s) 191, 554, 984
PpsI GAGTC 3 cut(s) 191, 554, 984
PscI ACATGT 1 cut(s) 208
PshBI ATTAAT 1 cut(s) 1257
PsiI TTATAA 1 cut(s) 939
Psp124BI GAGCTC 1 cut(s) 986
PspN4I GGNNCC 3 cut(s) 795, 1026, 1543
PspPI GGNCC 2 cut(s) 1542, 1654
PsuI RGATCY 3 cut(s) 793, 1024, 1174
PvuII CAGCTG 1 cut(s) 1031
RsaI GTAC 7 cut(s) 240, 524, 569, 623, 1010, 1351, 1515
RsaNI GTAC 7 cut(s) 239, 523, 568, 622, 1009, 1350, 1514
RseI CAYNNNNRTG 4 cut(s) 318, 903, 1191, 1565
SacI GAGCTC 1 cut(s) 986
SalI GTCGAC 1 cut(s) 557
SapI GCTCTTC 1 cut(s) 1118
SaqAI TTAA 6 cut(s) 24, 411, 582, 678, 1257, 1320
SatI GCNGC 1 cut(s) 909
Sau3AI GATC 9 cut(s) 45, 232, 310, 370, 472, 793, 1024, 1174, 1527
Sau96I GGNCC 2 cut(s) 1542, 1654
ScaI AGTACT 1 cut(s) 240
SchI GAGTC 3 cut(s) 191, 554, 985
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 2 cut(s) 986, 1163
SfaNI GCATC 7 cut(s) 52, 94, 310, 1030, 1288, 1469, 1543
SinI GGWCC 1 cut(s) 1542
SmiMI CAYNNNNRTG 4 cut(s) 318, 903, 1191, 1565
SmlI CTYRAG 4 cut(s) 410, 499, 518, 973
SmoI CTYRAG 4 cut(s) 410, 499, 518, 973
SsiI CCGC 3 cut(s) 698, 1004, 1237
SspI AATATT 2 cut(s) 764, 1288
SspMI CTAG 2 cut(s) 825, 1178
SstI GAGCTC 1 cut(s) 986
StyD4I CCNGG 1 cut(s) 221
StyI CCWWGG 2 cut(s) 289, 824
TaaI ACNGT 5 cut(s) 670, 846, 1013, 1247, 1631
TaiI ACGT 1 cut(s) 618
TaqI TCGA 5 cut(s) 235, 297, 558, 1097, 1477
TatI WGTACW 3 cut(s) 238, 567, 1349
TfiI GAWTC 3 cut(s) 163, 294, 1341
Tru1I TTAA 6 cut(s) 24, 411, 582, 678, 1257, 1320
Tru9I TTAA 6 cut(s) 24, 411, 582, 678, 1257, 1320
TscAI CASTG 6 cut(s) 55, 340, 450, 570, 1113, 1636
TseFI GTSAC 2 cut(s) 1225, 1241
TseI GCWGC 1 cut(s) 908
Tsp45I GTSAC 2 cut(s) 1225, 1241
TspDTI ATGAA 5 cut(s) 75, 219, 257, 421, 1341
TspGWI ACGGA 2 cut(s) 239, 266
TspRI CASTG 6 cut(s) 55, 340, 450, 570, 1113, 1636
Vha464I CTTAAG 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 1542
VspI ATTAAT 1 cut(s) 1257
XagI CCTNNNNNAGG 1 cut(s) 400
XapI RAATTY 6 cut(s) 272, 391, 573, 680, 1273, 1423
XceI RCATGY 2 cut(s) 33, 212
XmaJI CCTAGG 1 cut(s) 824
XmiI GTMKAC 2 cut(s) 558, 727
XspI CTAG 2 cut(s) 825, 1178
ZrmI AGTACT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.