MD11G1265000.v1.1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000079
Physical Location & Seq
Reverse (-)
38014211 .. 38017013
2803 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1265000.v1.1.491

Sequence Viewer

Length: 1461 bp
ATGGGTTCGAACTCAAAGTTAAAGTATGCCAATGCATGCAACAAAGATAGAATCAGTGCATTACCAGATGAAATTATCTGCAACATTCTTTCCACCCTGTCAACTAAAGAAGCTGTAAGGACCAGTATTATATCACCGAGATGGAGGAATGTGTGGGCTCATGTTCCCACTCTAGACCTTTGTGATAAGCATTATCAAAGAGAATTTAACCCAGTTGGTTTTTCTGAGTTTGTCGATCGTGCACTCTGCATTCATAGCCCGTTCAACAATCATGAATTCCGTCTCTCTAGTGCTTTTGCTGAGTTTGTGGATCGTGCACTCTCCATTCGTGGCACGTCCAAAATTCACAGACTCCGTCTTTGTTGCTCTGGGGTGAAGAATTATCCTCTTATTGATGCTTGGATAAGGACTGCCATTAGGCTTAATGTTGTTGAACTCGAACTTGTTCTGTATTCTTTTGGCCGCCCTTTTGAGTTGGCTAGAAATCTTTTCACGTGCAAAACGCTGGTCGTTTTGAAGCTTTTGCTGGAATCAAATATTACCTTCACTCCTACCTCAGATTGTTTCCCAAGTCTTAAGTTCTTCCATGCTAAAGTCTATGATCCTGATGCTGACTCAATGGAGAAGCTCTTTTCTTCTTGCCCTGCACTTGAAGAATTGATCATAGGAGGAGATATTGTAGCTAGTAAAGTTTTGAATTTTAATATCTCAACACCTGAACTAAACAGACTGAAAATATTCTTGGCGGAAGACGACTTTTGGGAAGGATCTGAGTCAAATATCTTTTTCAATGTTAATGCTCCAAACCTTGAAAAGTTTGATCTCGAGGCGGATTTTGTAGCAAACTATATTTTGAATGCAAATTCACTCAGCGAAGCCAAGATTGATCTCGAATATGTGCACACGTCTGGGTACATTGACTATGAACTTGGTTGTGTTGATCGTCTGGAAAGGCTTTTTGCAGGACTTCTCAATGTGAAATATCTGTCACTTTCAGCTCCACTTTTCGGGGATCCTGAATGTCACACTGAAGATGGTTTTCATCTGCCTGAACTGAATCGTTTGAACCATTTGGAGCTACTTCTTTTTACTTGCTGCAATTGGAAATCACTCATAGATTTGCTCAAGATATCGCCCCATCTGGAACATCTTGATGTTTATAATAACAAGGAATGTACGTTGGAAAATTATCGTGATCTCTTGGTATGTGAATGGGTTCCACCTGAGTTTGTGCCTATTTGTTTGTTGTCGCACATCAAGACTATTTGCCTTCGAGGAATCCAGGGCCGGCCTGATGAGACAGAAGTGACAAAGTACTTGTTGAAGCATGGCGAAGTCCTGAATAAGGTCACGATTTATACGTGCGACTTCCGCGTAGAAGACAAGCTGAAACTACGTCAGGAAATTTCAATGTTTTCAAAGGGTTCGACGACTTGTCAAATTGAATTCCTGGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

487

Amino Acids

55.68

Weight (kDa)

5.54

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 55 1.7e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 118 - 385 6.2e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 131 - 278 1.5e-11 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 408 - 452 4.2e-13 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1161
AccII CGCG 1 cut(s) 1374
AciI CCGC 4 cut(s) 463, 746, 830, 1372
AclWI GGATC 5 cut(s) 318, 596, 775, 1007, 1020
AcoI YGGCCR 1 cut(s) 460
AcsI RAATTY 7 cut(s) 203, 275, 342, 697, 862, 1404, 1445
AcuI CTGAAG 1 cut(s) 1050
AcvI CACGTG 1 cut(s) 495
AfaI GTAC 3 cut(s) 914, 1177, 1316
AfiI CCNNNNNNNGG 2 cut(s) 1007, 1345
AflII CTTAAG 1 cut(s) 575
AflIII ACRYGT 1 cut(s) 903
AhdI GACNNNNNGTC 1 cut(s) 1434
AjiI CACGTC 2 cut(s) 336, 906
AjnI CCWGG 2 cut(s) 1281, 1449
AjuI GAANNNNNNNTTGG 2 cut(s) 725, 757
AluBI AGCT 7 cut(s) 113, 520, 628, 683, 998, 1078, 1387
AluI AGCT 7 cut(s) 113, 520, 628, 683, 998, 1078, 1387
Alw21I GWGCWC 3 cut(s) 244, 319, 903
Alw26I GTCTC 2 cut(s) 287, 1292
Alw44I GTGCAC 3 cut(s) 240, 315, 899
AlwI GGATC 5 cut(s) 318, 596, 775, 1007, 1020
Ama87I CYCGRG 1 cut(s) 824
AoxI GGCC 3 cut(s) 460, 1285, 1289
ApaLI GTGCAC 3 cut(s) 240, 315, 899
ApeKI GCWGC 1 cut(s) 1095
ApoI RAATTY 7 cut(s) 203, 275, 342, 697, 862, 1404, 1445
ArsI GACNNNNNNTTYG 4 cut(s) 342, 374, 492, 524
Asp700I GAANNNNTTC 3 cut(s) 444, 737, 1215
AspS9I GGNCC 2 cut(s) 120, 1285
AsuHPI GGTGA 2 cut(s) 126, 385
AsuII TTCGAA 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 824
AvaII GGWCC 1 cut(s) 120
BaeGI GKGCMC 3 cut(s) 244, 319, 903
BamHI GGATCC 1 cut(s) 1012
BanII GRGCYC 1 cut(s) 160
BbrPI CACGTG 1 cut(s) 495
BbsI GAAGAC 2 cut(s) 756, 1386
Bbv12I GWGCWC 3 cut(s) 244, 319, 903
BbvI GCAGC 1 cut(s) 1082
BccI CCATC 3 cut(s) 135, 1028, 1146
BciT130I CCWGG 2 cut(s) 1283, 1451
BclI TGATCA 1 cut(s) 660
BcoDI GTCTC 2 cut(s) 287, 1292
BfaI CTAG 4 cut(s) 173, 288, 480, 684
BfrI CTTAAG 1 cut(s) 575
BisI GCNGC 2 cut(s) 463, 1096
BlsI GCNGC 2 cut(s) 464, 1097
BmcAI AGTACT 1 cut(s) 1316
Bme1390I CCNGG 2 cut(s) 1283, 1451
Bme18I GGWCC 1 cut(s) 120
BmeRI GACNNNNNGTC 1 cut(s) 1434
BmeT110I CYCGRG 1 cut(s) 824
BmgBI CACGTC 2 cut(s) 336, 906
BmgT120I GGNCC 2 cut(s) 120, 1285
BmiI GGNNCC 2 cut(s) 1014, 1218
BmrFI CCNGG 2 cut(s) 1283, 1451
BmrI ACTGGG 1 cut(s) 206
BmsI GCATC 2 cut(s) 385, 598
BmuI ACTGGG 1 cut(s) 206
BpiI GAAGAC 2 cut(s) 756, 1386
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 1109
BsaAI YACGTR 2 cut(s) 495, 1362
BsaJI CCNNGG 1 cut(s) 1282
BsaXI ACNNNNNCTCC 4 cut(s) 532, 562, 663, 693
Bsc4I CCNNNNNNNGG 2 cut(s) 1007, 1345
Bse118I RCCGGY 1 cut(s) 1287
Bse1I ACTGG 2 cut(s) 123, 212
BseBI CCWGG 2 cut(s) 1283, 1451
BseDI CCNNGG 1 cut(s) 1282
BseLI CCNNNNNNNGG 2 cut(s) 1007, 1345
BseMII CTCAG 6 cut(s) 216, 291, 570, 762, 883, 1215
BseNI ACTGG 2 cut(s) 123, 212
BseRI GAGGAG 1 cut(s) 684
BseSI GKGCMC 3 cut(s) 244, 319, 903
BseXI GCAGC 1 cut(s) 1082
BsgI GTGCAG 1 cut(s) 630
Bsh1236I CGCG 1 cut(s) 1374
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 3 cut(s) 462, 1287, 1291
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 3 cut(s) 244, 319, 903
BsiHKCI CYCGRG 1 cut(s) 824
BsiSI CCGG 1 cut(s) 1288
BslI CCNNNNNNNGG 2 cut(s) 1007, 1345
BsmAI GTCTC 2 cut(s) 287, 1292
BsmBI CGTCTC 1 cut(s) 287
BsmI GAATGC 2 cut(s) 249, 862
BsnI GGCC 3 cut(s) 462, 1287, 1291
BsoBI CYCGRG 1 cut(s) 824
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 4 cut(s) 160, 244, 319, 903
BspACI CCGC 4 cut(s) 463, 746, 830, 1372
BspANI GGCC 3 cut(s) 462, 1287, 1291
BspCNI CTCAG 6 cut(s) 217, 292, 569, 763, 882, 1216
BspFNI CGCG 1 cut(s) 1374
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 1014, 1218
BspPI GGATC 5 cut(s) 318, 596, 775, 1007, 1020
BspT104I TTCGAA 1 cut(s) 8
BspTI CTTAAG 1 cut(s) 575
BsrFI RCCGGY 1 cut(s) 1287
BsrI ACTGG 2 cut(s) 123, 212
BssAI RCCGGY 1 cut(s) 1287
BssECI CCNNGG 1 cut(s) 1282
Bst2UI CCWGG 2 cut(s) 1283, 1451
BstAFI CTTAAG 1 cut(s) 575
BstBAI YACGTR 2 cut(s) 495, 1362
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 37, 1289
BstDEI CTNAG 6 cut(s) 225, 300, 556, 771, 869, 1224
BstENI CCTNNNNNAGG 1 cut(s) 1343
BstFNI CGCG 1 cut(s) 1374
BstMAI GTCTC 2 cut(s) 287, 1292
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 255, 1371
BstNI CCWGG 2 cut(s) 1283, 1451
BstNSI RCATGY 1 cut(s) 39
BstSCI CCNGG 2 cut(s) 1281, 1449
BstSLI GKGCMC 3 cut(s) 244, 319, 903
BstUI CGCG 1 cut(s) 1374
BstV1I GCAGC 1 cut(s) 1082
BstV2I GAAGAC 2 cut(s) 756, 1386
BstX2I RGATCY 2 cut(s) 767, 1012
BstYI RGATCY 2 cut(s) 767, 1012
BsuRI GGCC 3 cut(s) 462, 1287, 1291
BtrI CACGTC 2 cut(s) 336, 906
BtsIMutI CAGTG 2 cut(s) 61, 1026
Cac8I GCNNGC 2 cut(s) 37, 1289
CciI TCATGA 1 cut(s) 271
Cfr10I RCCGGY 1 cut(s) 1287
Cfr13I GGNCC 2 cut(s) 120, 1285
Csp6I GTAC 3 cut(s) 913, 1176, 1315
CviAII CATG 5 cut(s) 36, 161, 272, 587, 1328
CviQI GTAC 3 cut(s) 913, 1176, 1315
DdeI CTNAG 6 cut(s) 225, 300, 556, 771, 869, 1224
DriI GACNNNNNGTC 1 cut(s) 1434
EaeI YGGCCR 1 cut(s) 460
Eam1105I GACNNNNNGTC 1 cut(s) 1434
EciI GGCGGA 2 cut(s) 761, 845
Eco24I GRGCYC 1 cut(s) 160
Eco32I GATATC 1 cut(s) 1131
Eco47I GGWCC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 1050
Eco72I CACGTG 1 cut(s) 495
Eco88I CYCGRG 1 cut(s) 824
EcoNI CCTNNNNNAGG 1 cut(s) 1343
EcoRI GAATTC 2 cut(s) 275, 1445
EcoRII CCWGG 2 cut(s) 1281, 1449
EcoRV GATATC 1 cut(s) 1131
EcoT22I ATGCAT 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 287
FaeI CATG 5 cut(s) 39, 164, 275, 590, 1331
FatI CATG 5 cut(s) 35, 160, 271, 586, 1327
FbaI TGATCA 1 cut(s) 660
Fnu4HI GCNGC 2 cut(s) 463, 1096
FriOI GRGCYC 1 cut(s) 160
FseI GGCCGGCC 1 cut(s) 1291
Fsp4HI GCNGC 2 cut(s) 463, 1096
FspBI CTAG 4 cut(s) 173, 288, 480, 684
GluI GCNGC 2 cut(s) 463, 1096
HaeIII GGCC 3 cut(s) 462, 1287, 1291
HapII CCGG 1 cut(s) 1288
Hin1II CATG 5 cut(s) 39, 164, 275, 590, 1331
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 7 cut(s) 51, 351, 530, 614, 773, 1057, 1278
HpaII CCGG 1 cut(s) 1288
HphI GGTGA 2 cut(s) 126, 385
Hpy166II GTNNAC 4 cut(s) 102, 242, 317, 901
Hpy188I TCNGA 3 cut(s) 226, 559, 772
Hpy8I GTNNAC 4 cut(s) 102, 242, 317, 901
Hpy99I CGWCG 1 cut(s) 1432
HpyAV CCTTC 3 cut(s) 553, 758, 1280
HpyCH4IV ACGT 6 cut(s) 335, 494, 905, 1178, 1361, 1396
HpyF10VI GCNNNNNNNGC 2 cut(s) 255, 1371
HpyF3I CTNAG 6 cut(s) 225, 300, 556, 771, 869, 1224
HpySE526I ACGT 6 cut(s) 335, 494, 905, 1178, 1361, 1396
Hsp92II CATG 5 cut(s) 39, 164, 275, 590, 1331
KroI GCCGGC 1 cut(s) 1287
KroNI GCCGGC 1 cut(s) 1289
Ksp22I TGATCA 1 cut(s) 660
LmnI GCTCC 3 cut(s) 805, 1003, 1075
Lsp1109I GCAGC 1 cut(s) 1082
LweI GCATC 2 cut(s) 385, 598
MaeI CTAG 4 cut(s) 173, 288, 480, 684
MaeII ACGT 6 cut(s) 335, 494, 905, 1178, 1361, 1396
MaeIII GTNAC 4 cut(s) 987, 1022, 1306, 1348
MboII GAAGA 7 cut(s) 388, 574, 627, 665, 761, 1043, 1391
MfeI CAATTG 1 cut(s) 1099
MflI RGATCY 2 cut(s) 767, 1012
MhlI GDGCHC 4 cut(s) 160, 244, 319, 903
MlyI GAGTC 3 cut(s) 345, 608, 782
MmeI TCCRAC 1 cut(s) 1161
MnlI CCTC 6 cut(s) 138, 396, 565, 662, 820, 1268
Mph1103I ATGCAT 1 cut(s) 37
MroNI GCCGGC 1 cut(s) 1287
MroXI GAANNNNTTC 3 cut(s) 444, 737, 1215
MseI TTAA 6 cut(s) 20, 207, 423, 576, 702, 795
MslI CAYNNNNRTG 2 cut(s) 139, 1152
MspCI CTTAAG 1 cut(s) 575
MspI CCGG 1 cut(s) 1288
MspR9I CCNGG 2 cut(s) 1283, 1451
MunI CAATTG 1 cut(s) 1099
Mva1269I GAATGC 2 cut(s) 249, 862
MvaI CCWGG 2 cut(s) 1283, 1451
MvnI CGCG 1 cut(s) 1374
MwoI GCNNNNNNNGC 2 cut(s) 255, 1371
NaeI GCCGGC 1 cut(s) 1289
NgoMIV GCCGGC 1 cut(s) 1287
NlaIII CATG 5 cut(s) 39, 164, 275, 590, 1331
NlaIV GGNNCC 2 cut(s) 1014, 1218
NmuCI GTSAC 4 cut(s) 987, 1022, 1306, 1348
NsiI ATGCAT 1 cut(s) 37
NspI RCATGY 1 cut(s) 39
NspV TTCGAA 1 cut(s) 8
PaeI GCATGC 1 cut(s) 39
PaeR7I CTCGAG 1 cut(s) 824
PagI TCATGA 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 1358
PctI GAATGC 2 cut(s) 249, 862
PdiI GCCGGC 1 cut(s) 1289
PdmI GAANNNNTTC 3 cut(s) 444, 737, 1215
PfeI GAWTC 4 cut(s) 51, 530, 1057, 1278
PflFI GACNNNGTC 1 cut(s) 354
PfoI TCCNGGA 1 cut(s) 1449
PkrI GCNGC 2 cut(s) 464, 1097
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 3 cut(s) 345, 608, 781
PmaCI CACGTG 1 cut(s) 495
PmlI CACGTG 1 cut(s) 495
PpsI GAGTC 3 cut(s) 345, 608, 781
Ppu21I YACGTR 2 cut(s) 495, 1362
PsiI TTATAA 1 cut(s) 1161
Psp6I CCWGG 2 cut(s) 1281, 1449
PspCI CACGTG 1 cut(s) 495
PspGI CCWGG 2 cut(s) 1281, 1449
PspN4I GGNNCC 2 cut(s) 1014, 1218
PspPI GGNCC 2 cut(s) 120, 1285
PsuI RGATCY 2 cut(s) 767, 1012
PsyI GACNNNGTC 1 cut(s) 354
PvuI CGATCG 1 cut(s) 238
RigI GGCCGGCC 1 cut(s) 1291
RsaI GTAC 3 cut(s) 914, 1177, 1316
RsaNI GTAC 3 cut(s) 913, 1176, 1315
RseI CAYNNNNRTG 2 cut(s) 139, 1152
SaqAI TTAA 6 cut(s) 20, 207, 423, 576, 702, 795
SatI GCNGC 2 cut(s) 463, 1096
Sau96I GGNCC 2 cut(s) 120, 1285
ScaI AGTACT 1 cut(s) 1316
SchI GAGTC 3 cut(s) 345, 608, 782
ScrFI CCNGG 2 cut(s) 1283, 1451
SduI GDGCHC 4 cut(s) 160, 244, 319, 903
SfaNI GCATC 2 cut(s) 385, 598
Sfr274I CTCGAG 1 cut(s) 824
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 1 cut(s) 120
SlaI CTCGAG 1 cut(s) 824
SmiMI CAYNNNNRTG 2 cut(s) 139, 1152
SmlI CTYRAG 3 cut(s) 575, 824, 1124
SmoI CTYRAG 3 cut(s) 575, 824, 1124
SphI GCATGC 1 cut(s) 39
SsiI CCGC 4 cut(s) 463, 746, 830, 1372
SspI AATATT 2 cut(s) 538, 738
SspMI CTAG 4 cut(s) 173, 288, 480, 684
StyD4I CCNGG 2 cut(s) 1281, 1449
TaiI ACGT 6 cut(s) 338, 497, 908, 1181, 1364, 1399
TaqI TCGA 7 cut(s) 8, 234, 438, 825, 891, 1273, 1427
TatI WGTACW 1 cut(s) 1314
TauI GCSGC 1 cut(s) 465
TfiI GAWTC 4 cut(s) 51, 530, 1057, 1278
Tru1I TTAA 6 cut(s) 20, 207, 423, 576, 702, 795
Tru9I TTAA 6 cut(s) 20, 207, 423, 576, 702, 795
TscAI CASTG 2 cut(s) 61, 1033
TseFI GTSAC 4 cut(s) 987, 1022, 1306, 1348
TseI GCWGC 1 cut(s) 1095
Tsp45I GTSAC 4 cut(s) 987, 1022, 1306, 1348
TspDTI ATGAA 5 cut(s) 84, 242, 288, 939, 1031
TspGWI ACGGA 2 cut(s) 269, 344
TspRI CASTG 2 cut(s) 61, 1033
Tth111I GACNNNGTC 1 cut(s) 354
Vha464I CTTAAG 1 cut(s) 575
VneI GTGCAC 3 cut(s) 240, 315, 899
VpaK11BI GGWCC 1 cut(s) 120
XagI CCTNNNNNAGG 1 cut(s) 1343
XapI RAATTY 7 cut(s) 203, 275, 342, 697, 862, 1404, 1445
XbaI TCTAGA 1 cut(s) 172
XceI RCATGY 1 cut(s) 39
XhoI CTCGAG 1 cut(s) 824
XmnI GAANNNNTTC 3 cut(s) 444, 737, 1215
XspI CTAG 4 cut(s) 173, 288, 480, 684
ZrmI AGTACT 1 cut(s) 1316
Zsp2I ATGCAT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.