Rh6BG456100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000079
Physical Location & Seq
Forward (+)
66856045 .. 66857324
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG456100.1

Sequence Viewer

Length: 810 bp
ATGGGGAAGCTGTTTTCTTGCTGCCCTGTGCTTGAAGATCTAACTATTGACGGAAAAGTGAAAAATGGAGACACTGATATAGGTTACAATTTCAATGTTTCTGTGCCTCAAGTGAAGACGCTGAACATAAGTCTTCAACTGGGGATGGCAAGGCCAAGAAGAGGTCATGAGTGTGAACAGTTTGAGACTCGTATCAATGTTTATATCGATGCCCCAAAGCTTGAAAAACTTGATCTCAAAAAGGATGGTTTCACAAATTATGGTCTCATGGGGAGAGCCAAGTCCCTAGTTAATGCCAGTATTGATGTCAGAGATTCTAGAGCCAAAAATCCACCTCACTTTCCCTCTTGTGCAACTGCGCTTCTGGTTGGAATTTCTAATGTGAAATATCTGTCTCTTTTGGCTCCTTGGTCAAAGGATTGGCGTCTCCCTGCTTTTGATAATTTGAAACAACTGAGGTTAGTTCTTGTGGATTGCAATTACTGGGAAGTGCTGCCTGAGTTTCTGCACTGTGCACCTAATCTCGAAGATTTGGCCTTAGAAAATGTAACTGAATGTGTGAGACAATATCCAAAGTGTGAATGGGATCTACCAAAGGATGTGCCTATTTGCTTGTTGTCACACCTGAAGACTATCTCCATAAGTGGATTCAAGGGACAGTGGGCTGAGAGGGAGATAGCCAAGTATCTCTTGAAGAATGGTTCTTTTTTGGATAAGATGCTGATTTACACAGACGGTGTGTATGCGGTACGAGACTTTCACAAGGAGTTTTCAATGTTCCATAGGATGGTTAAGTTCATTCAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

269

Amino Acids

30.8

Weight (kDa)

8.29

Isoelectric Point (pI)

30.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 198 - 242 1.4e-12 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 787
AciI CCGC 1 cut(s) 746
AclWI GGATC 1 cut(s) 594
AcsI RAATTY 1 cut(s) 372
AcuI CTGAAG 1 cut(s) 647
AcyI GRCGYC 1 cut(s) 424
AfaI GTAC 1 cut(s) 750
AfiI CCNNNNNNNGG 2 cut(s) 161, 787
AgsI TTSAA 8 cut(s) 35, 94, 137, 224, 448, 652, 694, 774
AluBI AGCT 2 cut(s) 10, 220
AluI AGCT 2 cut(s) 10, 220
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 7 cut(s) 63, 179, 269, 399, 431, 556, 747
Alw44I GTGCAC 1 cut(s) 513
AlwI GGATC 1 cut(s) 594
AoxI GGCC 2 cut(s) 152, 534
ApaLI GTGCAC 1 cut(s) 513
ApeKI GCWGC 2 cut(s) 21, 493
ApoI RAATTY 1 cut(s) 372
AspLEI GCGC 1 cut(s) 361
BaeGI GKGCMC 1 cut(s) 517
BbsI GAAGAC 3 cut(s) 122, 125, 635
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 2 cut(s) 8, 480
BccI CCATC 3 cut(s) 139, 239, 781
BcoDI GTCTC 7 cut(s) 63, 179, 269, 399, 431, 556, 747
BfaI CTAG 2 cut(s) 287, 318
BglII AGATCT 1 cut(s) 37
BisI GCNGC 2 cut(s) 22, 494
BlsI GCNGC 2 cut(s) 23, 495
BmiI GGNNCC 1 cut(s) 405
BmrI ACTGGG 2 cut(s) 149, 493
BmsI GCATC 2 cut(s) 199, 708
BmuI ACTGGG 2 cut(s) 149, 493
BpiI GAAGAC 3 cut(s) 122, 125, 635
BpuEI CTTGAG 1 cut(s) 93
Bsa29I ATCGAT 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 424
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 407
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 787
Bse1I ACTGG 3 cut(s) 144, 297, 488
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 407
BseGI GGATG 4 cut(s) 150, 250, 604, 792
BseLI CCNNNNNNNGG 2 cut(s) 161, 787
BseMII CTCAG 3 cut(s) 446, 489, 657
BseNI ACTGG 3 cut(s) 144, 297, 488
BseSI GKGCMC 1 cut(s) 517
BseXI GCAGC 2 cut(s) 8, 480
BsgI GTGCAG 1 cut(s) 491
BshFI GGCC 2 cut(s) 154, 536
BshVI ATCGAT 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 517
BslFI GGGAC 2 cut(s) 268, 669
BslI CCNNNNNNNGG 2 cut(s) 161, 787
BsmAI GTCTC 7 cut(s) 63, 179, 269, 399, 431, 556, 747
BsmBI CGTCTC 1 cut(s) 431
BsmFI GGGAC 2 cut(s) 268, 669
BsnI GGCC 2 cut(s) 154, 536
Bso31I GGTCTC 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 517
Bsp143I GATC 3 cut(s) 37, 232, 586
BspACI CCGC 1 cut(s) 746
BspANI GGCC 2 cut(s) 154, 536
BspCNI CTCAG 3 cut(s) 447, 490, 658
BspDI ATCGAT 1 cut(s) 207
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 405
BspPI GGATC 1 cut(s) 594
BspTNI GGTCTC 1 cut(s) 269
BsrI ACTGG 3 cut(s) 144, 297, 488
BssECI CCNNGG 1 cut(s) 407
BssMI GATC 3 cut(s) 37, 232, 586
BssNI GRCGYC 1 cut(s) 424
BssT1I CCWWGG 1 cut(s) 407
Bst4CI ACNGT 4 cut(s) 180, 512, 660, 737
Bst6I CTCTTC 1 cut(s) 154
BstACI GRCGYC 1 cut(s) 424
BstDEI CTNAG 4 cut(s) 455, 498, 538, 666
BstF5I GGATG 4 cut(s) 150, 250, 604, 792
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 3 cut(s) 40, 235, 589
BstMAI GTCTC 7 cut(s) 63, 179, 269, 399, 431, 556, 747
BstMBI GATC 3 cut(s) 37, 232, 586
BstSLI GKGCMC 1 cut(s) 517
BstV1I GCAGC 2 cut(s) 8, 480
BstV2I GAAGAC 3 cut(s) 122, 125, 635
BstX2I RGATCY 2 cut(s) 37, 586
BstYI RGATCY 2 cut(s) 37, 586
Bsu15I ATCGAT 1 cut(s) 207
BsuRI GGCC 2 cut(s) 154, 536
BsuTUI ATCGAT 1 cut(s) 207
BtsCI GGATG 4 cut(s) 150, 250, 604, 792
BtsIMutI CAGTG 3 cut(s) 72, 508, 665
CciI TCATGA 1 cut(s) 166
CfoI GCGC 1 cut(s) 361
ClaI ATCGAT 1 cut(s) 207
CseI GACGC 2 cut(s) 127, 413
Csp6I GTAC 1 cut(s) 749
CviAII CATG 2 cut(s) 167, 268
CviJI RGCY 9 cut(s) 10, 154, 220, 278, 323, 404, 536, 665, 680
CviKI_1 RGCY 9 cut(s) 10, 154, 220, 278, 323, 404, 536, 665, 680
CviQI GTAC 1 cut(s) 749
DdeI CTNAG 4 cut(s) 455, 498, 538, 666
DpnI GATC 3 cut(s) 39, 234, 588
DpnII GATC 3 cut(s) 37, 232, 586
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 407
Eco31I GGTCTC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 647
EcoT14I CCWWGG 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 407
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 2 cut(s) 170, 271
FaiI YATR 9 cut(s) 80, 128, 168, 204, 261, 269, 641, 744, 783
FalI AAGNNNNNCTT 2 cut(s) 674, 706
FaqI GGGAC 2 cut(s) 268, 669
FatI CATG 2 cut(s) 166, 267
Fnu4HI GCNGC 2 cut(s) 22, 494
FokI GGATG 4 cut(s) 157, 257, 611, 799
Fsp4HI GCNGC 2 cut(s) 22, 494
FspBI CTAG 2 cut(s) 287, 318
GlaI GCGC 1 cut(s) 360
GluI GCNGC 2 cut(s) 22, 494
HaeIII GGCC 2 cut(s) 154, 536
HgaI GACGC 2 cut(s) 127, 413
HhaI GCGC 1 cut(s) 361
Hin1I GRCGYC 1 cut(s) 424
Hin1II CATG 2 cut(s) 170, 271
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 3 cut(s) 187, 314, 648
Hpy166II GTNNAC 2 cut(s) 176, 515
Hpy188I TCNGA 2 cut(s) 311, 804
Hpy188III TCNNGA 4 cut(s) 167, 318, 524, 691
Hpy8I GTNNAC 2 cut(s) 176, 515
HpyCH4III ACNGT 4 cut(s) 180, 512, 660, 737
HpyCH4V TGCA 4 cut(s) 353, 477, 508, 515
HpyF3I CTNAG 4 cut(s) 455, 498, 538, 666
Hsp92I GRCGYC 1 cut(s) 424
Hsp92II CATG 2 cut(s) 170, 271
HspAI GCGC 1 cut(s) 359
Kzo9I GATC 3 cut(s) 37, 232, 586
LmnI GCTCC 1 cut(s) 409
LpnPI CCDG 8 cut(s) 39, 125, 310, 350, 444, 469, 510, 638
Lsp1109I GCAGC 2 cut(s) 8, 480
LweI GCATC 2 cut(s) 199, 708
MaeI CTAG 2 cut(s) 287, 318
MaeIII GTNAC 3 cut(s) 83, 547, 618
MalI GATC 3 cut(s) 39, 234, 588
MboI GATC 3 cut(s) 37, 232, 586
MboII GAAGA 7 cut(s) 47, 125, 127, 171, 539, 640, 706
MflI RGATCY 2 cut(s) 37, 586
MhlI GDGCHC 1 cut(s) 517
MluCI AATT 5 cut(s) 88, 256, 372, 442, 478
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 6 cut(s) 117, 155, 345, 355, 450, 663
MseI TTAA 2 cut(s) 291, 792
MslI CAYNNNNRTG 2 cut(s) 171, 803
NdeII GATC 3 cut(s) 37, 232, 586
NlaIII CATG 2 cut(s) 170, 271
NlaIV GGNNCC 1 cut(s) 405
NmuCI GTSAC 1 cut(s) 618
PagI TCATGA 1 cut(s) 166
PfeI GAWTC 2 cut(s) 314, 648
PflMI CCANNNNNTGG 1 cut(s) 787
PkrI GCNGC 2 cut(s) 23, 495
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 405
PsuI RGATCY 2 cut(s) 37, 586
RsaI GTAC 1 cut(s) 750
RsaNI GTAC 1 cut(s) 749
RseI CAYNNNNRTG 2 cut(s) 171, 803
SaqAI TTAA 2 cut(s) 291, 792
SatI GCNGC 2 cut(s) 22, 494
Sau3AI GATC 3 cut(s) 37, 232, 586
SchI GAGTC 1 cut(s) 181
SduI GDGCHC 1 cut(s) 517
SetI ASST 8 cut(s) 12, 85, 166, 222, 337, 461, 520, 627
SfaNI GCATC 2 cut(s) 199, 708
SmiMI CAYNNNNRTG 2 cut(s) 171, 803
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 5 cut(s) 88, 256, 372, 442, 478
SsiI CCGC 1 cut(s) 746
SspMI CTAG 2 cut(s) 287, 318
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 4 cut(s) 180, 512, 660, 737
TaqI TCGA 2 cut(s) 207, 525
TasI AATT 5 cut(s) 88, 256, 372, 442, 478
TfiI GAWTC 2 cut(s) 314, 648
Tru1I TTAA 2 cut(s) 291, 792
Tru9I TTAA 2 cut(s) 291, 792
TscAI CASTG 3 cut(s) 79, 515, 665
TseFI GTSAC 1 cut(s) 618
TseI GCWGC 2 cut(s) 21, 493
Tsp45I GTSAC 1 cut(s) 618
TspDTI ATGAA 1 cut(s) 787
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 3 cut(s) 79, 515, 665
Van91I CCANNNNNTGG 1 cut(s) 787
VneI GTGCAC 1 cut(s) 513
XapI RAATTY 1 cut(s) 372
XbaI TCTAGA 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 579
XspI CTAG 2 cut(s) 287, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.