RchiOBHm_Chr5g0029291

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000079
Physical Location & Seq
Reverse (-)
22932461 .. 22935068
2608 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30869

Sequence Viewer

Length: 1437 bp
ATGGATTCGGAGTCAAAGCGTCAACAACAAGGAGTTGATAGAATTAGTGCATTGCCAGATGCACTTGTTTGCCACATACTGTCATTCCTTCCTACAATATATGCTGTGTGGACCACCCTTCTGTCTAGGAGATGGAACAATTTATGGAGGTCTCTTCCCAATTTGGACTTCAATGACGAAGACTTCCCTACCAAGAGGACTGATCGTTTTATGAAATTTGTTGGTCGTGTACTTTCCTCCCGTGGCTCATCAGACATTCGAAAAATCTGTCTTCACATCCACCATTGTGAGAACTTCAGTACTGGGGATTTCTCTCGCGTTCAGAGGTGGATTCGTGCTGCCATTAGGCATAATATTGTTGAACTTGATCTTTCTCTTTGGTTTCAGTATCGCAAGAATGATGAATTTAAAATGCCTCTAAGCCTTTTCAAATGCAAAACACTTGAGGTTTTGTCATTGCATTCAAACTGCATTACCTACCCTGCTGCTACAGGAGGGTGTTTCCCATGCCTCAAGGTCCTCTATGTATCAGATTTTGATGATGACTCAATGCAGAAACTTTTTTCTCACTTCCCTGTGCTCGAAGAGTTGACTATTGATGCACACCTTAGTTTTTACAATGTTTTGAATATCAAAATCTCTGCACCTGAATTGAAGACACTGAGAATATTGTTGGACTATCCCAGTAACAACTATAAGCGTCCCAACAACATTTTTATCAATGCCCCGAAGCTGGAGAACCTTGAAGTCACAGATGGTGTTTTAACAAATTACATTTTGGAGAGTGCAAAATGTCCAGAAAGAACTAAGATTGTATATAATGACAGATGTCTGATTGCTGATGATGTTTGCTTTCGAGATAAAGATGATGTATTTGAAGATGAAGCTCCGAGATTCACTAACCGCGCAGCTGCTTTACTTACAAAAGTTCACAATGTTAAATTTCTGTCTCTTGATGCTCGTCCTAAATGTTTGGAGGCTTGGTGTGTACCTGCTTTGGAAAACTTGGGCAAACTGGAGCTGGCTCTTCGGGACTGCTACAACTGGGAATTGCTAACAGAGTTGCTGAAGAGATCACCTAAGATGGAATATCTTGGCTTGGAACATAGAAACACCAGTTTTGATGAATGGGAGATCCCAGAGTGTAAATGGAATCCACCTGAGTTTGTGCCTATTTGTTTGTCATCAAGCCTTAAGACTATCTGCGTGAAGGGATTCAAAGGAGGGCAGCATGAGATGGAAGTTGCAAAGTACTTGTTAAAATACGGTGAAGTTTTGAATACCATGATTATTTCAACCAAGAATCGGTTCAATAGGCAGGATGGTCATCCATATAAAACGGAGGAAGAGCTATGCGAGGAATTTTGTGTGTGTCAAAAGGGTTCAAAGATTTGCCAAGTTAACTTAATTTATGATGCAGGTTCATATTTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

478

Amino Acids

55.55

Weight (kDa)

6.48

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 54 4.8e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 78 - 442 1.6e-12 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 107 - 322 6.8e-13 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 387 - 431 3.4e-13 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1000, 1409
AccII CGCG 2 cut(s) 318, 906
AciI CCGC 1 cut(s) 904
AclWI GGATC 1 cut(s) 1129
AcsI RAATTY 4 cut(s) 215, 404, 941, 1361
AcuI CTGAAG 2 cut(s) 280, 1088
AfaI GTAC 4 cut(s) 231, 301, 990, 1253
AfiI CCNNNNNNNGG 2 cut(s) 733, 1305
AflII CTTAAG 1 cut(s) 1193
AjuI GAANNNNNNNTTGG 4 cut(s) 152, 184, 1292, 1324
AleI CACNNNNGTG 1 cut(s) 285
AluBI AGCT 5 cut(s) 733, 887, 911, 1021, 1351
AluI AGCT 5 cut(s) 733, 887, 911, 1021, 1351
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 2 cut(s) 156, 954
AlwI GGATC 1 cut(s) 1129
ApeKI GCWGC 5 cut(s) 338, 485, 908, 911, 1228
ApoI RAATTY 4 cut(s) 215, 404, 941, 1361
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
Asp700I GAANNNNTTC 2 cut(s) 1214, 1307
AspLEI GCGC 1 cut(s) 908
AspS9I GGNCC 2 cut(s) 111, 517
AsuHPI GGTGA 2 cut(s) 1068, 1280
AsuII TTCGAA 1 cut(s) 259
AvaII GGWCC 2 cut(s) 111, 517
BbsI GAAGAC 3 cut(s) 186, 263, 662
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 5 cut(s) 325, 472, 898, 920, 1240
BccI CCATC 5 cut(s) 126, 749, 1078, 1231, 1316
BcoDI GTCTC 2 cut(s) 156, 954
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 489
BfrI CTTAAG 1 cut(s) 1193
BfuAI ACCTGC 2 cut(s) 1000, 1409
BisI GCNGC 5 cut(s) 339, 486, 909, 912, 1229
BlsI GCNGC 5 cut(s) 340, 487, 910, 913, 1230
BmcAI AGTACT 2 cut(s) 301, 1253
Bme18I GGWCC 2 cut(s) 111, 517
BmgT120I GGNCC 2 cut(s) 111, 517
BmrI ACTGGG 3 cut(s) 312, 678, 1054
BmsI GCATC 4 cut(s) 49, 589, 946, 1405
BmuI ACTGGG 3 cut(s) 312, 678, 1054
BoxI GACNNNNGTC 1 cut(s) 828
BpiI GAAGAC 3 cut(s) 186, 263, 662
BpmI CTGGAG 2 cut(s) 755, 1037
Bpu14I TTCGAA 1 cut(s) 259
BpuEI CTTGAG 2 cut(s) 464, 497
BsaBI GATNNNNATC 1 cut(s) 1326
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 968, 998
Bsc4I CCNNNNNNNGG 2 cut(s) 733, 1305
Bse1I ACTGG 5 cut(s) 307, 684, 1020, 1049, 1116
Bse3DI GCAATG 2 cut(s) 50, 455
Bse8I GATNNNNATC 1 cut(s) 1326
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 3 cut(s) 276, 1327, 1327
BseJI GATNNNNATC 1 cut(s) 1326
BseLI CCNNNNNNNGG 2 cut(s) 733, 1305
BseMI GCAATG 2 cut(s) 50, 455
BseMII CTCAG 2 cut(s) 653, 1152
BseNI ACTGG 5 cut(s) 307, 684, 1020, 1049, 1116
BseXI GCAGC 5 cut(s) 325, 472, 898, 920, 1240
BsgI GTGCAG 1 cut(s) 627
Bsh1236I CGCG 2 cut(s) 318, 906
BsiHKAI GWGCWC 1 cut(s) 582
BslFI GGGAC 2 cut(s) 687, 1046
BslI CCNNNNNNNGG 2 cut(s) 733, 1305
BsmAI GTCTC 2 cut(s) 156, 954
BsmFI GGGAC 2 cut(s) 687, 1046
BsmI GAATGC 1 cut(s) 460
Bso31I GGTCTC 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 582
Bsp143I GATC 4 cut(s) 202, 367, 1073, 1134
BspACI CCGC 1 cut(s) 904
BspCNI CTCAG 2 cut(s) 654, 1153
BspFNI CGCG 2 cut(s) 318, 906
BspMI ACCTGC 2 cut(s) 1000, 1409
BspPI GGATC 1 cut(s) 1129
BspQI GCTCTTC 2 cut(s) 1032, 1341
BspT104I TTCGAA 1 cut(s) 259
BspTI CTTAAG 1 cut(s) 1193
BspTNI GGTCTC 1 cut(s) 156
BsrDI GCAATG 2 cut(s) 50, 455
BsrI ACTGG 5 cut(s) 307, 684, 1020, 1049, 1116
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 4 cut(s) 202, 367, 1073, 1134
Bst4CI ACNGT 2 cut(s) 81, 1268
Bst6I CTCTTC 5 cut(s) 159, 579, 1032, 1064, 1341
BstAFI CTTAAG 1 cut(s) 1193
BstBI TTCGAA 1 cut(s) 259
BstC8I GCNNGC 1 cut(s) 1023
BstDEI CTNAG 6 cut(s) 419, 608, 662, 807, 1080, 1161
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 3 cut(s) 276, 1327, 1327
BstFNI CGCG 2 cut(s) 318, 906
BstHHI GCGC 1 cut(s) 908
BstKTI GATC 4 cut(s) 205, 370, 1076, 1137
BstMAI GTCTC 2 cut(s) 156, 954
BstMBI GATC 4 cut(s) 202, 367, 1073, 1134
BstPAI GACNNNNGTC 1 cut(s) 828
BstSFI CTRYAG 1 cut(s) 489
BstUI CGCG 2 cut(s) 318, 906
BstV1I GCAGC 5 cut(s) 325, 472, 898, 920, 1240
BstV2I GAAGAC 3 cut(s) 186, 263, 662
BstX2I RGATCY 1 cut(s) 1134
BstYI RGATCY 1 cut(s) 1134
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 3 cut(s) 276, 1327, 1327
BtsIMutI CAGTG 1 cut(s) 659
BveI ACCTGC 2 cut(s) 1000, 1409
Cac8I GCNNGC 1 cut(s) 1023
CfoI GCGC 1 cut(s) 908
Cfr13I GGNCC 2 cut(s) 111, 517
CseI GACGC 2 cut(s) 8, 689
Csp6I GTAC 4 cut(s) 230, 300, 989, 1252
CviAII CATG 3 cut(s) 507, 1232, 1285
CviQI GTAC 4 cut(s) 230, 300, 989, 1252
DdeI CTNAG 6 cut(s) 419, 608, 662, 807, 1080, 1161
DpnI GATC 4 cut(s) 204, 369, 1075, 1136
DpnII GATC 4 cut(s) 202, 367, 1073, 1134
DraI TTTAAA 1 cut(s) 409
Eam1104I CTCTTC 5 cut(s) 159, 579, 1032, 1064, 1341
EarI CTCTTC 5 cut(s) 159, 579, 1032, 1064, 1341
Eco31I GGTCTC 1 cut(s) 156
Eco47I GGWCC 2 cut(s) 111, 517
Eco57I CTGAAG 2 cut(s) 280, 1088
EcoO109I RGGNCCY 1 cut(s) 517
FaeI CATG 3 cut(s) 510, 1235, 1288
FaqI GGGAC 2 cut(s) 687, 1046
FatI CATG 3 cut(s) 506, 1231, 1284
Fnu4HI GCNGC 5 cut(s) 339, 486, 909, 912, 1229
FokI GGATG 3 cut(s) 263, 1314, 1334
Fsp4HI GCNGC 5 cut(s) 339, 486, 909, 912, 1229
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 907
GluI GCNGC 5 cut(s) 339, 486, 909, 912, 1229
GsuI CTGGAG 2 cut(s) 755, 1037
HgaI GACGC 2 cut(s) 8, 689
HhaI GCGC 1 cut(s) 908
Hin1II CATG 3 cut(s) 510, 1235, 1288
Hin6I GCGC 1 cut(s) 906
HinP1I GCGC 1 cut(s) 906
HincII GTYRAC 3 cut(s) 23, 591, 1402
HindII GTYRAC 3 cut(s) 23, 591, 1402
HinfI GANTC 8 cut(s) 5, 11, 331, 545, 894, 1153, 1215, 1303
HpaI GTTAAC 1 cut(s) 1402
HphI GGTGA 2 cut(s) 1068, 1280
Hpy166II GTNNAC 7 cut(s) 23, 111, 230, 591, 931, 989, 1402
Hpy188I TCNGA 6 cut(s) 10, 253, 324, 532, 834, 891
Hpy188III TCNNGA 4 cut(s) 797, 857, 953, 1031
Hpy8I GTNNAC 7 cut(s) 23, 111, 230, 591, 931, 989, 1402
HpyAV CCTTC 3 cut(s) 98, 128, 1204
HpyCH4III ACNGT 2 cut(s) 81, 1268
HpyF3I CTNAG 6 cut(s) 419, 608, 662, 807, 1080, 1161
Hsp92II CATG 3 cut(s) 510, 1235, 1288
HspAI GCGC 1 cut(s) 906
KspAI GTTAAC 1 cut(s) 1402
Kzo9I GATC 4 cut(s) 202, 367, 1073, 1134
LguI GCTCTTC 2 cut(s) 1032, 1341
LmnI GCTCC 2 cut(s) 892, 1018
Lsp1109I GCAGC 5 cut(s) 325, 472, 898, 920, 1240
LweI GCATC 4 cut(s) 49, 589, 946, 1405
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 686, 748
MalI GATC 4 cut(s) 204, 369, 1075, 1136
MboI GATC 4 cut(s) 202, 367, 1073, 1134
MboII GAAGA 9 cut(s) 146, 191, 263, 596, 667, 890, 1019, 1081, 1358
MflI RGATCY 1 cut(s) 1134
MhlI GDGCHC 1 cut(s) 582
MlyI GAGTC 2 cut(s) 20, 539
MmeI TCCRAC 1 cut(s) 654
MroXI GAANNNNTTC 2 cut(s) 1214, 1307
MseI TTAA 7 cut(s) 408, 764, 939, 1194, 1259, 1401, 1406
MslI CAYNNNNRTG 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 911
MspCI CTTAAG 1 cut(s) 1193
Mva1269I GAATGC 1 cut(s) 460
MvnI CGCG 2 cut(s) 318, 906
NdeII GATC 4 cut(s) 202, 367, 1073, 1134
NlaIII CATG 3 cut(s) 510, 1235, 1288
NmuCI GTSAC 1 cut(s) 748
NspV TTCGAA 1 cut(s) 259
OliI CACNNNNGTG 1 cut(s) 285
PciSI GCTCTTC 2 cut(s) 1032, 1341
PctI GAATGC 1 cut(s) 460
PdmI GAANNNNTTC 2 cut(s) 1214, 1307
PfeI GAWTC 6 cut(s) 5, 331, 894, 1153, 1215, 1303
PkrI GCNGC 5 cut(s) 340, 487, 910, 913, 1230
PleI GAGTC 2 cut(s) 19, 539
PpsI GAGTC 2 cut(s) 19, 539
PpuMI RGGWCCY 1 cut(s) 517
PshAI GACNNNNGTC 1 cut(s) 828
Psp5II RGGWCCY 1 cut(s) 517
PspPI GGNCC 2 cut(s) 111, 517
PspPPI RGGWCCY 1 cut(s) 517
PsuI RGATCY 1 cut(s) 1134
PvuII CAGCTG 1 cut(s) 911
RsaI GTAC 4 cut(s) 231, 301, 990, 1253
RsaNI GTAC 4 cut(s) 230, 300, 989, 1252
RseI CAYNNNNRTG 1 cut(s) 285
SapI GCTCTTC 2 cut(s) 1032, 1341
SaqAI TTAA 7 cut(s) 408, 764, 939, 1194, 1259, 1401, 1406
SatI GCNGC 5 cut(s) 339, 486, 909, 912, 1229
Sau3AI GATC 4 cut(s) 202, 367, 1073, 1134
Sau96I GGNCC 2 cut(s) 111, 517
ScaI AGTACT 2 cut(s) 301, 1253
SchI GAGTC 2 cut(s) 20, 539
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 4 cut(s) 49, 589, 946, 1405
SfcI CTRYAG 1 cut(s) 489
SfuI TTCGAA 1 cut(s) 259
SinI GGWCC 2 cut(s) 111, 517
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 3 cut(s) 443, 512, 1193
SmoI CTYRAG 3 cut(s) 443, 512, 1193
SsiI CCGC 1 cut(s) 904
SspI AATATT 2 cut(s) 355, 669
SspMI CTAG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 81, 1268
TaqI TCGA 3 cut(s) 259, 582, 856
TatI WGTACW 3 cut(s) 229, 299, 1251
TfiI GAWTC 6 cut(s) 5, 331, 894, 1153, 1215, 1303
Tru1I TTAA 7 cut(s) 408, 764, 939, 1194, 1259, 1401, 1406
Tru9I TTAA 7 cut(s) 408, 764, 939, 1194, 1259, 1401, 1406
TscAI CASTG 1 cut(s) 666
TseFI GTSAC 1 cut(s) 748
TseI GCWGC 5 cut(s) 338, 485, 908, 911, 1228
Tsp45I GTSAC 1 cut(s) 748
TspDTI ATGAA 5 cut(s) 227, 417, 897, 1140, 1413
TspGWI ACGGA 1 cut(s) 1355
TspRI CASTG 1 cut(s) 666
Vha464I CTTAAG 1 cut(s) 1193
VpaK11BI GGWCC 2 cut(s) 111, 517
XapI RAATTY 4 cut(s) 215, 404, 941, 1361
XcmI CCANNNNNNNNNTGG 1 cut(s) 1146
XmnI GAANNNNTTC 2 cut(s) 1214, 1307
XspI CTAG 1 cut(s) 126
ZrmI AGTACT 2 cut(s) 301, 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.