Rroxscaffold_1G00051250

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000079
Physical Location & Seq
Reverse (-)
71908104 .. 71910925
2822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00051250.1

Sequence Viewer

Length: 759 bp
ATGAAGACAGGATCAGCAAACTGCCAGATGATGTTCTTTGTCATATTCTTTCATTACTCGATACACATGAAGCGGGGAATGAAGTTTTATTTGCCTCAGAGCCTTTACACGTGCACAACGCTAGTTGTTTTGAAGGTAGAATCAAATTGTATTTCCTATGATCCTCCCATCACAGGTTGTTTTCCAAGGCTTAAGGTGCTTGTTGTTTCATTTACGAATCCTGATAGTCCTGATCCAGTTAGGAGACTCTTTTCTTGTTGCCCTGTACTCGAAGAACTAGCTATATATGGATATCCTGGAAGAGATGCTTTGGATATTACTATCTCTGCACCTGAATTGAAGACATTAAAGATACATTTGAGCTGCAATAAATATTATATGTATGACCCTGCATACACTTTTAATATTGATGCCCCAAAGCTGGAAAACTTCAGTCTCAAGGATCCTTGGTTTCTTTCAAACTATCATTTGGAGAATGGAAATTCTGTAGTTAAAGCTAAAATTGTACTCAACGACTCAGAGGATTATGATCCTATCGACTTTGCTGATCGTACAACTGCCTTACTAGGAAGAATTTCAAATGTTGAATGCTTGTCTTTTTCAGCTGCATTTCTGGAGGATTTTCATCTTTCCACTTTTGATACTCTGTACCAATTGGAGCTGAGTCTTGGTGGTTGCAATAACTGGGAATTGCTAATGGAGTTTCTCAAGAGATCTCCAAATCTGAAACATCTCGTCTTAAAAAATAACGTAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

252

Amino Acids

28.88

Weight (kDa)

6.07

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 27 - 156 1.1e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 73
AclWI GGATC 6 cut(s) 19, 155, 227, 437, 450, 524
AcsI RAATTY 2 cut(s) 481, 573
AcuI CTGAAG 1 cut(s) 415
AcvI CACGTG 1 cut(s) 111
AfaI GTAC 4 cut(s) 267, 507, 553, 650
AfiI CCNNNNNNNGG 2 cut(s) 173, 421
AflII CTTAAG 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 5 cut(s) 133, 340, 459, 579, 587
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 6 cut(s) 281, 363, 421, 497, 605, 661
AluI AGCT 6 cut(s) 281, 363, 421, 497, 605, 661
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 2 cut(s) 238, 440
Alw44I GTGCAC 1 cut(s) 112
AlwI GGATC 6 cut(s) 19, 155, 227, 437, 450, 524
ApaLI GTGCAC 1 cut(s) 112
ApeKI GCWGC 2 cut(s) 363, 605
ApoI RAATTY 2 cut(s) 481, 573
Asp700I GAANNNNTTC 1 cut(s) 574
BaeGI GKGCMC 1 cut(s) 116
BamHI GGATCC 1 cut(s) 442
BbrPI CACGTG 1 cut(s) 111
BbsI GAAGAC 2 cut(s) 11, 347
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 350, 592
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 297
BcoDI GTCTC 2 cut(s) 238, 440
BfaI CTAG 3 cut(s) 122, 278, 566
BfmI CTRYAG 1 cut(s) 486
BfrI CTTAAG 1 cut(s) 191
BglII AGATCT 1 cut(s) 713
BisI GCNGC 2 cut(s) 364, 606
BlsI GCNGC 2 cut(s) 365, 607
Bme1390I CCNGG 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 444
BmrFI CCNGG 1 cut(s) 297
BmrI ACTGGG 1 cut(s) 694
BmsI GCATC 2 cut(s) 295, 400
BmuI ACTGGG 1 cut(s) 694
BpiI GAAGAC 2 cut(s) 11, 347
BpmI CTGGAG 1 cut(s) 635
BpuEI CTTGAG 2 cut(s) 422, 692
BsaAI YACGTR 1 cut(s) 111
BsaBI GATNNNNATC 2 cut(s) 528, 624
BsaJI CCNNGG 2 cut(s) 185, 446
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 421
Bse1I ACTGG 2 cut(s) 236, 689
Bse8I GATNNNNATC 2 cut(s) 528, 624
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 185, 446
BseJI GATNNNNATC 2 cut(s) 528, 624
BseLI CCNNNNNNNGG 2 cut(s) 173, 421
BseMII CTCAG 3 cut(s) 110, 531, 653
BseNI ACTGG 2 cut(s) 236, 689
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 2 cut(s) 350, 592
BsgI GTGCAG 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 173, 421
BsmAI GTCTC 2 cut(s) 238, 440
BsmI GAATGC 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 7 cut(s) 11, 160, 232, 442, 529, 547, 713
BspACI CCGC 1 cut(s) 73
BspCNI CTCAG 3 cut(s) 109, 530, 654
BspLI GGNNCC 1 cut(s) 444
BspPI GGATC 6 cut(s) 19, 155, 227, 437, 450, 524
BspTI CTTAAG 1 cut(s) 191
BsrI ACTGG 2 cut(s) 236, 689
BssECI CCNNGG 2 cut(s) 185, 446
BssMI GATC 7 cut(s) 11, 160, 232, 442, 529, 547, 713
BssT1I CCWWGG 2 cut(s) 185, 446
Bst2UI CCWGG 1 cut(s) 297
Bst6I CTCTTC 1 cut(s) 295
BstAFI CTTAAG 1 cut(s) 191
BstBAI YACGTR 1 cut(s) 111
BstDEI CTNAG 3 cut(s) 96, 517, 662
BstKTI GATC 7 cut(s) 14, 163, 235, 445, 532, 550, 716
BstMAI GTCTC 2 cut(s) 238, 440
BstMBI GATC 7 cut(s) 11, 160, 232, 442, 529, 547, 713
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 295
BstSFI CTRYAG 1 cut(s) 486
BstSLI GKGCMC 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 350, 592
BstV2I GAAGAC 2 cut(s) 11, 347
BstX2I RGATCY 2 cut(s) 442, 713
BstYI RGATCY 2 cut(s) 442, 713
Csp6I GTAC 4 cut(s) 266, 506, 552, 649
CviAII CATG 1 cut(s) 67
CviJI RGCY 8 cut(s) 102, 190, 281, 363, 421, 497, 605, 661
CviKI_1 RGCY 8 cut(s) 102, 190, 281, 363, 421, 497, 605, 661
CviQI GTAC 4 cut(s) 266, 506, 552, 649
DdeI CTNAG 3 cut(s) 96, 517, 662
DpnI GATC 7 cut(s) 13, 162, 234, 444, 531, 549, 715
DpnII GATC 7 cut(s) 11, 160, 232, 442, 529, 547, 713
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco130I CCWWGG 2 cut(s) 185, 446
Eco32I GATATC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 415
Eco72I CACGTG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 295
EcoRV GATATC 1 cut(s) 293
EcoT14I CCWWGG 2 cut(s) 185, 446
ErhI CCWWGG 2 cut(s) 185, 446
FaeI CATG 1 cut(s) 70
FalI AAGNNNNNCTT 2 cut(s) 292, 324
FatI CATG 1 cut(s) 66
FauI CCCGC 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 364, 606
Fsp4HI GCNGC 2 cut(s) 364, 606
FspBI CTAG 3 cut(s) 122, 278, 566
GluI GCNGC 2 cut(s) 364, 606
GsuI CTGGAG 1 cut(s) 635
Hin1II CATG 1 cut(s) 70
HinfI GANTC 5 cut(s) 140, 217, 246, 515, 664
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 3 cut(s) 99, 520, 726
Hpy188III TCNNGA 4 cut(s) 221, 230, 614, 709
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 127
HpyCH4IV ACGT 2 cut(s) 110, 750
HpyCH4V TGCA 6 cut(s) 114, 329, 366, 392, 608, 678
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 3 cut(s) 96, 517, 662
HpySE526I ACGT 2 cut(s) 110, 750
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 7 cut(s) 11, 160, 232, 442, 529, 547, 713
LmnI GCTCC 1 cut(s) 658
Lsp1109I GCAGC 2 cut(s) 350, 592
LweI GCATC 2 cut(s) 295, 400
MaeI CTAG 3 cut(s) 122, 278, 566
MaeII ACGT 2 cut(s) 110, 750
MalI GATC 7 cut(s) 13, 162, 234, 444, 531, 549, 715
MboI GATC 7 cut(s) 11, 160, 232, 442, 529, 547, 713
MboII GAAGA 5 cut(s) 16, 284, 312, 352, 582
MfeI CAATTG 1 cut(s) 653
MflI RGATCY 2 cut(s) 442, 713
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 7 cut(s) 145, 335, 481, 501, 573, 653, 689
MlyI GAGTC 3 cut(s) 240, 509, 673
MnlI CCTC 4 cut(s) 105, 174, 514, 610
MroXI GAANNNNTTC 1 cut(s) 574
MseI TTAA 5 cut(s) 192, 347, 402, 492, 740
MspA1I CMGCKG 1 cut(s) 605
MspCI CTTAAG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 297
MunI CAATTG 1 cut(s) 653
Mva1269I GAATGC 1 cut(s) 593
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 196
NdeII GATC 7 cut(s) 11, 160, 232, 442, 529, 547, 713
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 444
PctI GAATGC 1 cut(s) 593
PdmI GAANNNNTTC 1 cut(s) 574
PfeI GAWTC 2 cut(s) 140, 217
PfoI TCCNGGA 1 cut(s) 295
PkrI GCNGC 2 cut(s) 365, 607
PleI GAGTC 3 cut(s) 240, 509, 672
PmaCI CACGTG 1 cut(s) 111
PmlI CACGTG 1 cut(s) 111
PpsI GAGTC 3 cut(s) 240, 509, 672
Ppu21I YACGTR 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 295
PspCI CACGTG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 444
PsuI RGATCY 2 cut(s) 442, 713
PvuII CAGCTG 1 cut(s) 605
RsaI GTAC 4 cut(s) 267, 507, 553, 650
RsaNI GTAC 4 cut(s) 266, 506, 552, 649
SaqAI TTAA 5 cut(s) 192, 347, 402, 492, 740
SatI GCNGC 2 cut(s) 364, 606
Sau3AI GATC 7 cut(s) 11, 160, 232, 442, 529, 547, 713
SchI GAGTC 3 cut(s) 240, 509, 673
ScrFI CCNGG 1 cut(s) 297
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 2 cut(s) 295, 400
SfcI CTRYAG 1 cut(s) 486
SmlI CTYRAG 3 cut(s) 191, 437, 707
SmoI CTYRAG 3 cut(s) 191, 437, 707
Sse9I AATT 7 cut(s) 145, 335, 481, 501, 573, 653, 689
SsiI CCGC 1 cut(s) 73
SspI AATATT 2 cut(s) 374, 406
SspMI CTAG 3 cut(s) 122, 278, 566
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 2 cut(s) 185, 446
TaiI ACGT 2 cut(s) 113, 753
TaqI TCGA 3 cut(s) 59, 270, 537
TasI AATT 7 cut(s) 145, 335, 481, 501, 573, 653, 689
TatI WGTACW 2 cut(s) 265, 505
TfiI GAWTC 2 cut(s) 140, 217
Tru1I TTAA 5 cut(s) 192, 347, 402, 492, 740
Tru9I TTAA 5 cut(s) 192, 347, 402, 492, 740
TseI GCWGC 2 cut(s) 363, 605
TspDTI ATGAA 6 cut(s) 17, 41, 83, 95, 198, 614
Vha464I CTTAAG 1 cut(s) 191
VneI GTGCAC 1 cut(s) 112
XapI RAATTY 2 cut(s) 481, 573
XmnI GAANNNNTTC 1 cut(s) 574
XspI CTAG 3 cut(s) 122, 278, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.