RchiOBHm_Chr1g0363181

peroxisome matrix targeting signal-2 binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000079
Physical Location & Seq
Reverse (-)
54640765 .. 54641287
523 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58795

Sequence Viewer

Length: 459 bp
ATGGATTCCATTCCTTGTTCAAAAAGAGGAAAAGAAATGGATGCGATCGATAGGATCAGTGCATTGCCAGATGCACTCATTAGTCACATACTTTCCTCACTTCCAACATTAGATGCCGTGAGGACCACTGTTTTGTCTAGAAGATGGAACAACCAGTGGACTTCTATTCAGAATTTAGACTTTGATGAGGGTAACCGTTATTTTAGTTCTACTCACAGCAGTGACCGTGATTGGTTTACTAGGTTTGTTAATCGTGTACTTGTTTCTCGAGACTCATCAGATATCCACAAGTTCACTGTTCTTTTCAACAGGGCTCATTATCGCATAATCCTAGCATTGTCGATTGGATTTGCACTGCTGTTAGGCACAATGTGGTTGCACTCCGACTTAAATATAAAGAGGGGACTAGTATTCAAATGCCTCCAAGTGTTTTTACATGCAAAACAATGCGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000268 GO:0001501 GO:0001503 GO:0001764 GO:0001958 GO:0003674 GO:0005048 GO:0005053 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005782 GO:0005829 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006662 GO:0006810 GO:0006886 GO:0006928 GO:0006996 GO:0007031 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008611 GO:0009056 GO:0009058 GO:0009062 GO:0009653 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016477 GO:0016558 GO:0016560 GO:0017038 GO:0018904 GO:0019395 GO:0019752 GO:0019899 GO:0022008 GO:0030154 GO:0030258 GO:0031090 GO:0031461 GO:0031903 GO:0031907 GO:0031974 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034440 GO:0034613 GO:0036075 GO:0040011 GO:0042277 GO:0042579 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046485 GO:0046504 GO:0046907 GO:0046983 GO:0048513 GO:0048699 GO:0048705 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051674 GO:0055085 GO:0055114 GO:0060348 GO:0060349 GO:0060350 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0080008 GO:0097384 GO:0098588 GO:0098805 GO:1901503 GO:1901575 GO:1901576 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
WD40

Protein Analysis

152

Amino Acids

17.52

Weight (kDa)

9.45

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 57 3.9e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 450
AclWI GGATC 1 cut(s) 62
AcsI RAATTY 1 cut(s) 172
AdeI CACNNNGTG 1 cut(s) 372
AfaI GTAC 1 cut(s) 258
AgsI TTSAA 3 cut(s) 21, 307, 415
AhlI ACTAGT 1 cut(s) 406
AleI CACNNNNGTG 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 267
ApoI RAATTY 1 cut(s) 172
ArsI GACNNNNNNTTYG 2 cut(s) 115, 147
AspS9I GGNCC 1 cut(s) 123
AvaI CYCGRG 1 cut(s) 267
AvaII GGWCC 1 cut(s) 123
BanII GRGCYC 1 cut(s) 316
BccI CCATC 1 cut(s) 138
BceAI ACGGC 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 264
BcuI ACTAGT 1 cut(s) 406
BfaI CTAG 4 cut(s) 138, 240, 332, 407
Bme18I GGWCC 1 cut(s) 123
BmeT110I CYCGRG 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 123
BmsI GCATC 3 cut(s) 31, 61, 103
Bsa29I ATCGAT 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 62
BseCI ATCGAT 1 cut(s) 48
BseGI GGATG 1 cut(s) 46
BseMI GCAATG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 154
Bsh1285I CGRYCG 1 cut(s) 48
BshVI ATCGAT 1 cut(s) 48
BsiEI CGRYCG 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 267
BslFI GGGAC 1 cut(s) 417
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 417
BsoBI CYCGRG 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 2 cut(s) 45, 54
BspACI CCGC 1 cut(s) 450
BspDI ATCGAT 1 cut(s) 48
BspPI GGATC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 62
BsrI ACTGG 1 cut(s) 154
BssMI GATC 2 cut(s) 45, 54
Bst4CI ACNGT 4 cut(s) 130, 197, 227, 298
BstEII GGTNACC 1 cut(s) 191
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 2 cut(s) 48, 57
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 2 cut(s) 45, 54
BstMCI CGRYCG 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 440
BstPI GGTNACC 1 cut(s) 191
Bsu15I ATCGAT 1 cut(s) 48
BsuTUI ATCGAT 1 cut(s) 48
BtsCI GGATG 1 cut(s) 46
BtsI GCAGTG 2 cut(s) 226, 353
BtsIMutI CAGTG 6 cut(s) 64, 126, 161, 226, 294, 353
Cfr13I GGNCC 1 cut(s) 123
ClaI ATCGAT 1 cut(s) 48
Csp6I GTAC 1 cut(s) 257
CviAII CATG 1 cut(s) 437
CviJI RGCY 1 cut(s) 314
CviKI_1 RGCY 1 cut(s) 314
CviQI GTAC 1 cut(s) 257
DpnI GATC 2 cut(s) 47, 56
DpnII GATC 2 cut(s) 45, 54
DraIII CACNNNGTG 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 316
Eco32I GATATC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 267
Eco91I GGTNACC 1 cut(s) 191
EcoO65I GGTNACC 1 cut(s) 191
EcoRV GATATC 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 316
FaeI CATG 1 cut(s) 440
FaiI YATR 4 cut(s) 89, 326, 395, 438
FaqI GGGAC 1 cut(s) 417
FatI CATG 1 cut(s) 436
FokI GGATG 1 cut(s) 53
FriOI GRGCYC 1 cut(s) 316
FspBI CTAG 4 cut(s) 138, 240, 332, 407
Hin1II CATG 1 cut(s) 440
HinfI GANTC 2 cut(s) 5, 272
Hpy166II GTNNAC 4 cut(s) 159, 237, 257, 294
Hpy188I TCNGA 3 cut(s) 171, 280, 385
Hpy188III TCNNGA 3 cut(s) 138, 267, 269
Hpy8I GTNNAC 4 cut(s) 159, 237, 257, 294
HpyCH4III ACNGT 4 cut(s) 130, 197, 227, 298
HpyCH4V TGCA 5 cut(s) 62, 74, 353, 379, 440
Hsp92II CATG 1 cut(s) 440
Kzo9I GATC 2 cut(s) 45, 54
LpnPI CCDG 3 cut(s) 81, 167, 295
LweI GCATC 3 cut(s) 31, 61, 103
MaeI CTAG 4 cut(s) 138, 240, 332, 407
MaeIII GTNAC 3 cut(s) 83, 191, 221
MalI GATC 2 cut(s) 47, 56
MboI GATC 2 cut(s) 45, 54
MboII GAAGA 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 1 cut(s) 172
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 2 cut(s) 128, 408
MnlI CCTC 6 cut(s) 20, 106, 114, 181, 393, 431
MseI TTAA 2 cut(s) 249, 389
MslI CAYNNNNRTG 1 cut(s) 219
NdeII GATC 2 cut(s) 45, 54
NlaIII CATG 1 cut(s) 440
NmuCI GTSAC 2 cut(s) 83, 221
NspI RCATGY 1 cut(s) 440
OliI CACNNNNGTG 1 cut(s) 219
PaeR7I CTCGAG 1 cut(s) 267
PfeI GAWTC 1 cut(s) 5
Ple19I CGATCG 1 cut(s) 48
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PspEI GGTNACC 1 cut(s) 191
PspPI GGNCC 1 cut(s) 123
PvuI CGATCG 1 cut(s) 48
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 2 cut(s) 249, 389
Sau3AI GATC 2 cut(s) 45, 54
Sau96I GGNCC 1 cut(s) 123
SchI GAGTC 1 cut(s) 266
SduI GDGCHC 1 cut(s) 316
SetI ASST 1 cut(s) 245
SfaNI GCATC 3 cut(s) 31, 61, 103
Sfr274I CTCGAG 1 cut(s) 267
SinI GGWCC 1 cut(s) 123
SlaI CTCGAG 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
SpeI ACTAGT 1 cut(s) 406
Sse9I AATT 1 cut(s) 172
SsiI CCGC 1 cut(s) 450
SspMI CTAG 4 cut(s) 138, 240, 332, 407
TaaI ACNGT 4 cut(s) 130, 197, 227, 298
TaqI TCGA 3 cut(s) 48, 268, 341
TasI AATT 1 cut(s) 172
TatI WGTACW 1 cut(s) 256
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 249, 389
Tru9I TTAA 2 cut(s) 249, 389
TscAI CASTG 6 cut(s) 64, 133, 161, 226, 301, 360
TseFI GTSAC 2 cut(s) 83, 221
Tsp45I GTSAC 2 cut(s) 83, 221
TspRI CASTG 6 cut(s) 64, 133, 161, 226, 301, 360
VpaK11BI GGWCC 1 cut(s) 123
XapI RAATTY 1 cut(s) 172
XbaI TCTAGA 1 cut(s) 137
XceI RCATGY 1 cut(s) 440
XhoI CTCGAG 1 cut(s) 267
XspI CTAG 4 cut(s) 138, 240, 332, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.