Rh5AG198100

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
23363026 .. 23373747
10722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG198100.1

Sequence Viewer

Length: 1065 bp
ATGGTTCGAGGTTGTGGAAGGAAGATGAACTTTTTGGTTGAGGTTTCAATGTCAAAGAGTAAAGCAAGAGTTAAGGATAGGATTAGTGCATTACCTGATGAAGTTGTTTGCAAAATACCTTCCTGCCTTGATATACAATCTGCTGTGAGGACCACCGTTTTGTCCCCGAGATGGAACAATTTATGGACCTCTCTTCCCGACCTGTGGTTCCGCAATGAAGATTTCAGCGATGAAGATGCTTTTATGACGTTTGTGGATCGTGTTCTTTTCTTTCGTGACTCGTCAGACATCAAAGAATTCTTTCTTGACTGCGAGTATCCGAAGGAAGATTTCTCTCGTATTGAGAGTTGGATTTGTACCGCCATTCGGCGGAATGTTGTTGAACTTCATCTTTGTGTCAACTTCTATCCAGGCAGGACTTTTGAATTGCCTCGAAGCCTTTTCACTTGCAAAACGCTAGAGGTGTTGATCCTGACGTCAAATTTTATTGCCAATCCTCCAAAATCTGTGTGTTTCCCAAATCTCAAGACCCTTGATGTTCTGGTTCATTTTCCTCACCATAATAACTCGTCATTAGGACAGATTTTCTCTAACTGCCCTGTGCTTGAGGATTTGAGAATTGAAGGACCTCTTGGGGCGTATGATGAAGTTTTGGATTTCAACATCTCTGCACCTGAACTGAAGAGATTAACAATAGGATTGCACATTGACGATTTTGAGGATGAAGAGTATAGTTTTCATCTTAATGCTCCAAAACTTGAAGTCTTTAACCTCCCTGTGGGTGATTCGTCAGTGTTTTCATTTGAGATGAATGCAAAGTCCCTCTTCAAAGCCAATATCCATCTTTCTAGCTGTTTAATAAATTTTGACGGTACAAATGGACTTCTGGAAGCCATCTCCAATGTCAAACAGTTGTCTCTTTCAACTCGTAATTTGGAGGTAAGTAACTTACCCGTTTACATTATATTTGTTAGAGAGGATTATAGAAACTGCTACTTGAAGAAGGGATGGAAAGATAGGCGCGAGATCTCCTGTTTGGTAGATTCTTCTCTGCACAGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

354

Amino Acids

40.7

Weight (kDa)

5.48

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 28 - 66 1.9e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 96 - 319 3.9e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 115 - 255 8.1e-13 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32020
fragaria_vesca FvH4_2g37070 FvH4_3g17062 FvH4_3g17580 FvH4_3g17580 FvH4_3g17580 FvH4_3g17581 FvH4_3g18162 FvH4_3g20210 FvH4_3g32940 FvH4_3g33370 FvH4_3g33390 FvH4_3g33400 FvH4_3g33400 FvH4_3g33400 FvH4_3g33401 FvH4_3g33430 FvH4_4g00640 FvH4_5g02210 FvH4_5g02220 FvH4_5g02220 FvH4_5g02221 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02230 FvH4_5g02280 FvH4_5g02290 FvH4_5g02290 FvH4_5g08740 FvH4_5g24470 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g07500 FvH4_6g08520 FvH4_6g10000 FvH4_7g28000 FvH4_7g28011 FvH4_7g28030 FvH4_7g28040 FvH4_7g28042
malus_domestica MD03G1112000.v1.1 MD03G1112100.v1.1 MD03G1112200.v1.1 MD03G1253000.v1.1 MD03G1253100.v1.1 MD03G1253400.v1.1 MD03G1255400.v1.1 MD03G1276300.v1.1 MD03G1276400.v1.1 MD05G1193700.v1.1 MD11G1265000.v1.1 MD11G1265100.v1.1 MD11G1265300.v1.1 MD11G1275400.v1.1 MD11G1275600.v1.1
prunus_persica Prupe.4G151700_v2.0.a1 Prupe.4G160800_v2.0.a1 Prupe.4G160900_v2.0.a1 Prupe.4G161000_v2.0.a1 Prupe.4G161100_v2.0.a1 Prupe.4G161200_v2.0.a1 Prupe.4G161300_v2.0.a1 Prupe.5G021800_v2.0.a1
pyrus_communis pycom03g06140 pycom03g19340 pycom03g20150 pycom03g20210 pycom05g18110 pycom11g23320 pycom11g24360 pycom11g24380
rosa_chinensis RchiOBHm_Chr1g0321391 RchiOBHm_Chr1g0363171 RchiOBHm_Chr1g0363181 RchiOBHm_Chr2g0115721 RchiOBHm_Chr3g0458571 RchiOBHm_Chr3g0460681 RchiOBHm_Chr4g0387591 RchiOBHm_Chr5g0028191 RchiOBHm_Chr5g0028201 RchiOBHm_Chr5g0028241 RchiOBHm_Chr5g0028261 RchiOBHm_Chr5g0028411 RchiOBHm_Chr5g0028431 RchiOBHm_Chr5g0029291 RchiOBHm_Chr5g0030601 RchiOBHm_Chr5g0030631 RchiOBHm_Chr5g0059941 RchiOBHm_Chr5g0059951 RchiOBHm_Chr5g0059961 RchiOBHm_Chr5g0060061 RchiOBHm_Chr5g0060761 RchiOBHm_Chr5g0060771 RchiOBHm_Chr6g0304711 RchiOBHm_Chr7g0192751 RchiOBHm_Chr7g0197861 RchiOBHm_Chr7g0197881 RchiOBHm_Chr7g0197891 RchiOBHm_Chr7g0197921
rosa_laevigata RLG00000003903 RLG00000003904 RLG00000004332 RLG00000010109 RLG00000010957 RLG00000018203 RLG00000024989 RLG00000025147 RLG00000027586 RLG00000030426 RLG00000033074 RLG00000033075 RLG00000033076 RLG00000033094 RLG00000033150 RLG00000033234 RLG00000035345 RLG00000035399
rosa_multiflora Rmu_co8271835.1_g000001 Rmu_co8353127.1_g000001 Rmu_co8434667.1_g000001 Rmu_co8434713.1_g000001 Rmu_co8441243.1_g000001 Rmu_co8501607.1_g000001 Rmu_sc0000471.1_g000010 Rmu_sc0000724.1_g000008 Rmu_sc0000727.1_g000033 Rmu_sc0000814.1_g000032 Rmu_sc0000960.1_g000003 Rmu_sc0001082.1_g000014 Rmu_sc0001082.1_g000016 Rmu_sc0001571.1_g000005 Rmu_sc0001571.1_g000007 Rmu_sc0001571.1_g000008 Rmu_sc0001571.1_g000020 Rmu_sc0002040.1_g000017 Rmu_sc0002925.1_g000003 Rmu_sc0003864.1_g000006 Rmu_sc0005482.1_g000001 Rmu_sc0005482.1_g000005 Rmu_sc0006771.1_g000006 Rmu_sc0007143.1_g000008 Rmu_sc0007248.1_g000006 Rmu_sc0011593.1_g000004 Rmu_sc0011593.1_g000006 Rmu_sc0011593.1_g000007 Rmu_sc0011593.1_g000012 Rmu_sc0016104.1_g000007 Rmu_sc0022819.1_g000001 Rmu_sc0025685.1_g000002 Rmu_sc0027256.1_g000002 Rmu_sc0034563.1_g000001 Rmu_sc0034642.1_g000001 Rmu_ssc0000197.1_g000059
rosa_roxburghii Rroxscaffold_1G00019950 Rroxscaffold_1G00020580 Rroxscaffold_1G00051250 Rroxscaffold_1G00051270 Rroxscaffold_1G00051470 Rroxscaffold_1G00051480 Rroxscaffold_2G00127930 Rroxscaffold_2G00128790 Rroxscaffold_3G00258110 Rroxscaffold_3G00258130 Rroxscaffold_6G00419310 Rroxscaffold_6G00420970 Rroxscaffold_6G00421360 Rroxscaffold_7G00163570
rosa_rugosa Rorug01G0032500 Rorug02G0199500.1 Rorug02G0199600.1 Rorug03G0024200 Rorug03G0029800 Rorug03G0029900 Rorug03G0045000 Rorug03G0045000 Rorug03G0310900 Rorug05G0104800 Rorug05G0104900 Rorug05G0105000 Rorug05G0105100 Rorug05G0105200 Rorug05G0105300 Rorug05G0107400 Rorug05G0107600 Rorug05G0112900 Rorug05G0118900 Rorug05G0327000 Rorug05G0327000 Rorug05G0327000 Rorug05G0328000 Rorug05G0333900 Rorug06G0333700 Rorug07G0004400 Rorug07G0044100 Rorug07G0044200 Rorug07G0044200 Rorug07G0044300 Rorug07G0044400
rosa_samantha Rh1AG314000 Rh1BG277500 Rh1CG293900 Rh1DG051800 Rh1DG308100 Rh1DG308200 Rh2AG256700 Rh2AG295900 Rh2BG267300 Rh2CG262300 Rh2DG265100 Rh2DG319900 Rh3AG084700 Rh3AG088100 Rh3AG102600 Rh3BG087500 Rh3CG088000 Rh3CG091300 Rh3CG108200 Rh3DG088400 Rh4AG017000 Rh4CG018100 Rh4DG012700 Rh5AG198100 Rh5AG198200 Rh5AG198300 Rh5AG198500 Rh5AG198600 Rh5AG198700 Rh5AG200400 Rh5AG205000 Rh5AG211100 Rh5AG244900 Rh5AG391100 Rh5AG391200 Rh5AG396500 Rh5BG197000 Rh5BG197100 Rh5BG197200 Rh5BG197300 Rh5BG198600 Rh5BG198800 Rh5BG403400 Rh5BG403500 Rh5CG216700 Rh5CG216900 Rh5CG217000 Rh5CG218500 Rh5CG225000 Rh5CG427400 Rh5CG427500 Rh5CG433300 Rh5DG198400 Rh5DG198500 Rh5DG198800 Rh5DG198900 Rh5DG199000 Rh5DG200700 Rh5DG201000 Rh5DG207200 Rh5DG215000 Rh5DG374300 Rh5DG419000 Rh5DG419100 Rh5DG420200 Rh5DG423900 Rh6BG456100 Rh6CG458700 Rh7AG129400 Rh7AG168100 Rh7AG457700 Rh7BG170900 Rh7CG177400 Rh7CG177500 Rh7DG131600 Rh7DG169800 Rh7DG169900 Rh7DG170000 Rh7DG170100
rosa_wichuraiana Rw1G027820 Rw2G020090 Rw3G007530 Rw3G008730 Rw4G001080 Rw5G018080 Rw5G018090 Rw5G018100 Rw5G018110 Rw5G018120 Rw5G018640 Rw5G019310 Rw5G036810 Rw5G036820 Rw5G036830 Rw5G037390 Rw6G038770 Rw7G011070 Rw7G014650 Rw7G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 479
AccII CGCG 1 cut(s) 1023
AciI CCGC 3 cut(s) 211, 360, 370
AclWI GGATC 2 cut(s) 264, 463
AcsI RAATTY 3 cut(s) 296, 481, 862
AcuI CTGAAG 1 cut(s) 701
AcyI GRCGYC 1 cut(s) 476
AfaI GTAC 2 cut(s) 358, 874
AfiI CCNNNNNNNGG 5 cut(s) 171, 204, 366, 369, 778
AgsI TTSAA 9 cut(s) 48, 383, 425, 623, 661, 761, 829, 924, 1000
AjnI CCWGG 1 cut(s) 409
AjuI GAANNNNNNNTTGG 2 cut(s) 615, 647
AluBI AGCT 2 cut(s) 852, 1059
AluI AGCT 2 cut(s) 852, 1059
Alw26I GTCTC 1 cut(s) 921
AlwI GGATC 2 cut(s) 264, 463
Ama87I CYCGRG 1 cut(s) 166
ApoI RAATTY 3 cut(s) 296, 481, 862
ArsI GACNNNNNNTTYG 2 cut(s) 142, 174
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 1023
AspS9I GGNCC 3 cut(s) 150, 186, 626
AsuHPI GGTGA 2 cut(s) 548, 794
AvaI CYCGRG 1 cut(s) 166
AvaII GGWCC 3 cut(s) 150, 186, 626
BccI CCATC 4 cut(s) 165, 849, 902, 1002
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 1 cut(s) 411
BciVI GTATCC 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 921
BfaI CTAG 2 cut(s) 458, 849
BfuI GTATCC 1 cut(s) 327
BglII AGATCT 1 cut(s) 1026
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 3 cut(s) 150, 186, 626
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 3 cut(s) 150, 186, 626
BmiI GGNNCC 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 1 cut(s) 226
BpuEI CTTGAG 2 cut(s) 509, 626
BsaHI GRCGYC 1 cut(s) 476
Bsc4I CCNNNNNNNGG 5 cut(s) 171, 204, 366, 369, 778
Bse3DI GCAATG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 411
BseGI GGATG 2 cut(s) 727, 1013
BseLI CCNNNNNNNGG 5 cut(s) 171, 204, 366, 369, 778
BseMI GCAATG 1 cut(s) 220
BsgI GTGCAG 2 cut(s) 654, 1037
Bsh1236I CGCG 1 cut(s) 1023
BsiHKCI CYCGRG 1 cut(s) 166
BslFI GGGAC 2 cut(s) 148, 805
BslI CCNNNNNNNGG 5 cut(s) 171, 204, 366, 369, 778
BsmAI GTCTC 1 cut(s) 921
BsmFI GGGAC 2 cut(s) 148, 805
BsmI GAATGC 1 cut(s) 817
BsoBI CYCGRG 1 cut(s) 166
Bsp143I GATC 3 cut(s) 256, 468, 1026
BspACI CCGC 3 cut(s) 211, 360, 370
BspFNI CGCG 1 cut(s) 1023
BspLI GGNNCC 1 cut(s) 209
BspPI GGATC 2 cut(s) 264, 463
BsrDI GCAATG 1 cut(s) 220
BssMI GATC 3 cut(s) 256, 468, 1026
BssNI GRCGYC 1 cut(s) 476
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 3 cut(s) 157, 872, 912
Bst6I CTCTTC 4 cut(s) 198, 677, 720, 830
BstACI GRCGYC 1 cut(s) 476
BstF5I GGATG 2 cut(s) 727, 1013
BstFNI CGCG 1 cut(s) 1023
BstHHI GCGC 1 cut(s) 1023
BstKTI GATC 3 cut(s) 259, 471, 1029
BstMAI GTCTC 1 cut(s) 921
BstMBI GATC 3 cut(s) 256, 468, 1026
BstNI CCWGG 1 cut(s) 411
BstSCI CCNGG 1 cut(s) 409
BstUI CGCG 1 cut(s) 1023
BstX2I RGATCY 1 cut(s) 1026
BstYI RGATCY 1 cut(s) 1026
BsuI GTATCC 1 cut(s) 327
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 2 cut(s) 727, 1013
BtsIMutI CAGTG 1 cut(s) 798
CfoI GCGC 1 cut(s) 1023
Cfr13I GGNCC 3 cut(s) 150, 186, 626
Csp6I GTAC 2 cut(s) 357, 873
CviJI RGCY 5 cut(s) 438, 833, 852, 893, 1059
CviKI_1 RGCY 5 cut(s) 438, 833, 852, 893, 1059
CviQI GTAC 2 cut(s) 357, 873
DpnI GATC 3 cut(s) 258, 470, 1028
DpnII GATC 3 cut(s) 256, 468, 1026
Eam1104I CTCTTC 4 cut(s) 198, 677, 720, 830
EarI CTCTTC 4 cut(s) 198, 677, 720, 830
EciI GGCGGA 1 cut(s) 385
Eco47I GGWCC 3 cut(s) 150, 186, 626
Eco57I CTGAAG 1 cut(s) 701
Eco88I CYCGRG 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 626
EcoRI GAATTC 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 409
FaiI YATR 8 cut(s) 134, 184, 245, 561, 642, 732, 965, 984
FalI AAGNNNNNCTT 6 cut(s) 14, 46, 615, 647, 809, 841
FaqI GGGAC 2 cut(s) 148, 805
FokI GGATG 2 cut(s) 734, 1020
FspBI CTAG 2 cut(s) 458, 849
GlaI GCGC 1 cut(s) 1022
HhaI GCGC 1 cut(s) 1023
Hin1I GRCGYC 1 cut(s) 476
Hin6I GCGC 1 cut(s) 1021
HinP1I GCGC 1 cut(s) 1021
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 3 cut(s) 278, 785, 1043
HphI GGTGA 2 cut(s) 548, 794
Hpy166II GTNNAC 2 cut(s) 400, 958
Hpy188I TCNGA 2 cut(s) 286, 321
Hpy188III TCNNGA 6 cut(s) 197, 275, 305, 472, 526, 887
Hpy8I GTNNAC 2 cut(s) 400, 958
HpyAV CCTTC 5 cut(s) 12, 129, 316, 617, 997
HpyCH4III ACNGT 3 cut(s) 157, 872, 912
HpyCH4IV ACGT 2 cut(s) 248, 476
HpyCH4V TGCA 7 cut(s) 89, 111, 450, 671, 703, 815, 1054
HpySE526I ACGT 2 cut(s) 248, 476
Hsp92I GRCGYC 1 cut(s) 476
HspAI GCGC 1 cut(s) 1021
Kzo9I GATC 3 cut(s) 256, 468, 1026
LmnI GCTCC 1 cut(s) 754
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 458, 849
MaeII ACGT 2 cut(s) 248, 476
MaeIII GTNAC 2 cut(s) 275, 944
MalI GATC 3 cut(s) 258, 470, 1028
MboI GATC 3 cut(s) 256, 468, 1026
MflI RGATCY 1 cut(s) 1026
MluCI AATT 7 cut(s) 178, 296, 425, 481, 618, 862, 931
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 329
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 5 cut(s) 72, 689, 744, 768, 857
MslI CAYNNNNRTG 2 cut(s) 393, 744
MspR9I CCNGG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 817
MvaI CCWGG 1 cut(s) 411
MvnI CGCG 1 cut(s) 1023
NdeII GATC 3 cut(s) 256, 468, 1026
NlaIV GGNNCC 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 275
PctI GAATGC 1 cut(s) 817
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 2 cut(s) 785, 1043
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PpuMI RGGWCCY 1 cut(s) 626
Psp5II RGGWCCY 1 cut(s) 626
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 209
PspPI GGNCC 3 cut(s) 150, 186, 626
PspPPI RGGWCCY 1 cut(s) 626
PsuI RGATCY 1 cut(s) 1026
RsaI GTAC 2 cut(s) 358, 874
RsaNI GTAC 2 cut(s) 357, 873
RseI CAYNNNNRTG 2 cut(s) 393, 744
SaqAI TTAA 5 cut(s) 72, 689, 744, 768, 857
Sau3AI GATC 3 cut(s) 256, 468, 1026
Sau96I GGNCC 3 cut(s) 150, 186, 626
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 411
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 3 cut(s) 150, 186, 626
SmiMI CAYNNNNRTG 2 cut(s) 393, 744
SmlI CTYRAG 2 cut(s) 524, 605
SmoI CTYRAG 2 cut(s) 524, 605
Sse9I AATT 7 cut(s) 178, 296, 425, 481, 618, 862, 931
SsiI CCGC 3 cut(s) 211, 360, 370
SspMI CTAG 2 cut(s) 458, 849
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 3 cut(s) 157, 872, 912
TaiI ACGT 2 cut(s) 251, 479
TaqI TCGA 2 cut(s) 7, 433
TasI AATT 7 cut(s) 178, 296, 425, 481, 618, 862, 931
TfiI GAWTC 2 cut(s) 785, 1043
Tru1I TTAA 5 cut(s) 72, 689, 744, 768, 857
Tru9I TTAA 5 cut(s) 72, 689, 744, 768, 857
TscAI CASTG 1 cut(s) 798
TseFI GTSAC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 275
TspRI CASTG 1 cut(s) 798
VpaK11BI GGWCC 3 cut(s) 150, 186, 626
XapI RAATTY 3 cut(s) 296, 481, 862
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 2 cut(s) 458, 849
ZraI GACGTC 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.