Rorug01G0123700

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0010536
Physical Location & Seq
Reverse (-)
21317580 .. 21323942
6363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0123700.1

Sequence Viewer

Length: 1692 bp
ATGTCTAAAGCGGATGGTCTAAAATTCCAACTTCTGAAACTTAATTCATCAGGCAAAGTAGTTGCGGAGCTATCAAAGGGTTATTACACTAAGGCTGCAGTTTTGTTACACCCTTCCCGTGTCACTCTTGATGATATTAAAGGTACGGCATCTCTTACACAGTTCACGGTTGAAAAAACACTTACTTTCAAAAATATTGAAACCTTGGGTAAGACCGACAAAGGTTTTGAAGATGCTAAACGTGTAATTGCTGCTCTAAAGAACAAAGGGGTATCCGGGATAGGAGCTGCAGGGTTCTGTTGGGGCGGCAAAGTAGTTGCGGAGCTATCAAAGGGTTATTACACTAAGGCTGCAGTTTTGTTACACCCTTCCCGTGTCACTCTTGATGATATTAAAGGTACGGCATCCCTTACACAGTTCACGGTTGAAAAAACACTTACTTTCAAAAATATTGAAACCTTGGGTAAGACTAGTATTACTCAAACTGTGCTTTTATATGCATTGTCCAAATTCAACTTGTACGCCATTTATTGTGGAACAATGACAATTCAACTTGACAAAGGTTTTGAAGATGCTAAACGTGTAATTGCTGCTCTAAAGAACAAAGGGGTATCCGGGATAGGAGCTGCAGGGTTCTGTTGGGGCGGCAAAGTAGTTGCGGAGCTATCAAAGGGTTATTACACTAAGGCTGCAGTTTTGTTACACCCTTCCCGTGTCACTCTTGATGATATTAAAGGTACGGCATCCCTTACACAGTTCACGGTTGAAAAAACACTTACTTTCAAAAATATTGAAACCTTGGGTAAGACTAGTATTACTCAAACTGTGCTTTTATATGCATTGTCCAAATTCAACTTGTACGCCATTTATTGTGGAACAATGACAATTCAACTTGACAAAGGTTTTGAAGATGCTAAACGTGTAATTGCTGCTCTAAAGAACAAAGGGGTATCCGGGATAGGAGCTGCAGGGTTCTGTTGGGGCGGCAAAGTAGTTGCGGAGCTATCAAAGGGTTATTACACTAAGGCTGCAGTTTTGTTACACCCTTCCCGTGTCACTCTTGATGATATTAAAGGTACGGCATCCCTTACACAGTTCACGGTTGAAAAAACATTTACTTTCAAAAATATTGAAACCTTGGGTAAGACTAGTATTACTCAAACTGTGCTTTTATATGCATTGTCCAAATTCAACTTGTACGCCATTTATTGTGGAACAATGACAATTCAACTTGTATGCCATTTAGTCAAGGTTGAGTTAGTCAAGGACAAAGGTTTTGAAGATGCTAAACGTGTAATTGCTGCTCTAAAGAACAAAGGGGTATCCGGGATAGGAGCTGCAGGGTTCTGTTGGGGCGGCAAAGTAGTTGCGGAGCTATCAAAGGGTTATTACACTAAGGCTGCAGTTTTGTTACACCCTTCCCGTGTCACTCTTGATGATATTAAAGAGATTAAGACTCCAATAGCCATATTGGCTGCTCAATTTGACAACAGCACTGCACCTGAACTCGTGAAACAGTTTAAGGAGGTTTTATCCACTAATAAGGTTGATAACTTTGTGAAAATATTTCCTGGTGTTTCGCATGGATGGACTGTCAGGTATAAAGATGACAATGTGACCGCTGTCAAAAGCGCTAATGAAGCTCATCAAGATATGTTGGACTGGTTTACTAAGTATGTTCAAAAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

563

Amino Acids

61.13

Weight (kDa)

9.51

Isoelectric Point (pI)

18.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 423 - 559 3.6e-22 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 23, 509, 848, 1187
AfaI GTAC 7 cut(s) 145, 400, 521, 739, 860, 1078, 1199
AfeI AGCGCT 1 cut(s) 1633
AflIII ACRYGT 4 cut(s) 241, 580, 919, 1291
AhlI ACTAGT 3 cut(s) 470, 809, 1148
AjnI CCWGG 1 cut(s) 1570
Aor51HI AGCGCT 1 cut(s) 1633
ApoI RAATTY 4 cut(s) 23, 509, 848, 1187
ArsI GACNNNNNNTTYG 8 cut(s) 209, 241, 548, 580, 887, 919, 1259, 1291
AspLEI GCGC 1 cut(s) 1634
AsuC2I CCSGG 4 cut(s) 277, 616, 955, 1327
BauI CACGAG 1 cut(s) 1508
BccI CCATC 2 cut(s) 8, 1581
BceAI ACGGC 4 cut(s) 162, 417, 756, 1095
BciT130I CCWGG 1 cut(s) 1572
BciVI GTATCC 4 cut(s) 283, 622, 961, 1333
BcnI CCSGG 4 cut(s) 277, 616, 955, 1327
BcuI ACTAGT 3 cut(s) 470, 809, 1148
BfaI CTAG 3 cut(s) 471, 810, 1149
BfmI CTRYAG 9 cut(s) 96, 288, 351, 627, 690, 966, 1029, 1338, 1401
BfoI RGCGCY 1 cut(s) 1635
BfuI GTATCC 4 cut(s) 283, 622, 961, 1333
BglI GCCNNNNNGGC 1 cut(s) 1472
Bme1390I CCNGG 5 cut(s) 277, 616, 955, 1327, 1572
BmrFI CCNGG 5 cut(s) 277, 616, 955, 1327, 1572
BmsI GCATC 8 cut(s) 158, 223, 413, 562, 752, 901, 1091, 1273
BoxI GACNNNNGTC 1 cut(s) 1622
BpuMI CCSGG 4 cut(s) 277, 616, 955, 1327
BsaJI CCNNGG 4 cut(s) 204, 459, 798, 1137
Bse1I ACTGG 1 cut(s) 1667
BseBI CCWGG 1 cut(s) 1572
BseDI CCNNGG 4 cut(s) 204, 459, 798, 1137
BseGI GGATG 5 cut(s) 19, 404, 743, 1082, 1592
BseNI ACTGG 1 cut(s) 1667
BsgI GTGCAG 1 cut(s) 1482
BsiSI CCGG 4 cut(s) 276, 615, 954, 1326
BspMAI CTGCAG 9 cut(s) 100, 292, 355, 631, 694, 970, 1033, 1342, 1405
BsrI ACTGG 1 cut(s) 1667
BssECI CCNNGG 4 cut(s) 204, 459, 798, 1137
BssSI CACGAG 1 cut(s) 1508
BssT1I CCWWGG 4 cut(s) 204, 459, 798, 1137
Bst2BI CACGAG 1 cut(s) 1508
Bst2UI CCWGG 1 cut(s) 1572
BstDEI CTNAG 6 cut(s) 90, 345, 684, 1023, 1395, 1671
BstF5I GGATG 5 cut(s) 19, 404, 743, 1082, 1592
BstH2I RGCGCY 1 cut(s) 1635
BstHHI GCGC 1 cut(s) 1634
BstMWI GCNNNNNNNGC 2 cut(s) 1472, 1640
BstNI CCWGG 1 cut(s) 1572
BstPAI GACNNNNGTC 1 cut(s) 1622
BstSCI CCNGG 5 cut(s) 275, 614, 953, 1325, 1570
BstSFI CTRYAG 9 cut(s) 96, 288, 351, 627, 690, 966, 1029, 1338, 1401
BsuI GTATCC 4 cut(s) 283, 622, 961, 1333
BtsCI GGATG 5 cut(s) 19, 404, 743, 1082, 1592
BtsI GCAGTG 1 cut(s) 1494
BtsIMutI CAGTG 1 cut(s) 1494
CfoI GCGC 1 cut(s) 1634
Csp6I GTAC 7 cut(s) 144, 399, 520, 738, 859, 1077, 1198
CviAII CATG 2 cut(s) 1583, 1689
CviQI GTAC 7 cut(s) 144, 399, 520, 738, 859, 1077, 1198
DdeI CTNAG 6 cut(s) 90, 345, 684, 1023, 1395, 1671
Eco130I CCWWGG 4 cut(s) 204, 459, 798, 1137
Eco47III AGCGCT 1 cut(s) 1633
EcoRII CCWGG 1 cut(s) 1570
EcoT14I CCWWGG 4 cut(s) 204, 459, 798, 1137
EcoT22I ATGCAT 3 cut(s) 502, 841, 1180
ErhI CCWWGG 4 cut(s) 204, 459, 798, 1137
FaeI CATG 2 cut(s) 1586, 1692
FatI CATG 2 cut(s) 1582, 1688
FokI GGATG 5 cut(s) 26, 391, 730, 1069, 1599
FspBI CTAG 3 cut(s) 471, 810, 1149
GlaI GCGC 1 cut(s) 1633
HaeII RGCGCY 1 cut(s) 1635
HapII CCGG 4 cut(s) 276, 615, 954, 1326
HhaI GCGC 1 cut(s) 1634
Hin1II CATG 2 cut(s) 1586, 1692
Hin6I GCGC 1 cut(s) 1632
HinP1I GCGC 1 cut(s) 1632
HinfI GANTC 1 cut(s) 1456
HpaII CCGG 4 cut(s) 276, 615, 954, 1326
Hpy166II GTNNAC 5 cut(s) 165, 420, 759, 1098, 1668
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 7 cut(s) 128, 383, 722, 1061, 1433, 1510, 1649
Hpy8I GTNNAC 5 cut(s) 165, 420, 759, 1098, 1668
HpyAV CCTTC 5 cut(s) 123, 378, 717, 1056, 1428
HpyCH4IV ACGT 4 cut(s) 241, 580, 919, 1291
HpyF10VI GCNNNNNNNGC 2 cut(s) 1472, 1640
HpyF3I CTNAG 6 cut(s) 90, 345, 684, 1023, 1395, 1671
HpySE526I ACGT 4 cut(s) 241, 580, 919, 1291
Hsp92II CATG 2 cut(s) 1586, 1692
HspAI GCGC 1 cut(s) 1632
LmnI GCTCC 9 cut(s) 67, 284, 322, 623, 661, 962, 1000, 1334, 1372
LweI GCATC 8 cut(s) 158, 223, 413, 562, 752, 901, 1091, 1273
MaeI CTAG 3 cut(s) 471, 810, 1149
MaeII ACGT 4 cut(s) 241, 580, 919, 1291
MboII GAAGA 4 cut(s) 242, 581, 920, 1292
MlyI GAGTC 1 cut(s) 1450
MmeI TCCRAC 2 cut(s) 52, 1638
MnlI CCTC 1 cut(s) 1519
Mph1103I ATGCAT 3 cut(s) 502, 841, 1180
MseI TTAA 8 cut(s) 42, 138, 393, 732, 1071, 1443, 1452, 1521
MspA1I CMGCKG 1 cut(s) 1622
MspI CCGG 4 cut(s) 276, 615, 954, 1326
MspR9I CCNGG 5 cut(s) 277, 616, 955, 1327, 1572
MvaI CCWGG 1 cut(s) 1572
MwoI GCNNNNNNNGC 2 cut(s) 1472, 1640
NciI CCSGG 4 cut(s) 277, 616, 955, 1327
NlaIII CATG 2 cut(s) 1586, 1692
NmuCI GTSAC 6 cut(s) 121, 376, 715, 1054, 1426, 1615
NsiI ATGCAT 3 cut(s) 502, 841, 1180
PfoI TCCNGGA 4 cut(s) 275, 614, 953, 1325
PleI GAGTC 1 cut(s) 1450
PpsI GAGTC 1 cut(s) 1450
PshAI GACNNNNGTC 1 cut(s) 1622
Psp6I CCWGG 1 cut(s) 1570
PspGI CCWGG 1 cut(s) 1570
PstI CTGCAG 9 cut(s) 100, 292, 355, 631, 694, 970, 1033, 1342, 1405
RsaI GTAC 7 cut(s) 145, 400, 521, 739, 860, 1078, 1199
RsaNI GTAC 7 cut(s) 144, 399, 520, 738, 859, 1077, 1198
SaqAI TTAA 8 cut(s) 42, 138, 393, 732, 1071, 1443, 1452, 1521
SchI GAGTC 1 cut(s) 1450
ScrFI CCNGG 5 cut(s) 277, 616, 955, 1327, 1572
SfaNI GCATC 8 cut(s) 158, 223, 413, 562, 752, 901, 1091, 1273
SfcI CTRYAG 9 cut(s) 96, 288, 351, 627, 690, 966, 1029, 1338, 1401
SpeI ACTAGT 3 cut(s) 470, 809, 1148
SspI AATATT 5 cut(s) 196, 451, 790, 1129, 1566
SspMI CTAG 3 cut(s) 471, 810, 1149
StyD4I CCNGG 5 cut(s) 275, 614, 953, 1325, 1570
StyI CCWWGG 4 cut(s) 204, 459, 798, 1137
TaiI ACGT 4 cut(s) 244, 583, 922, 1294
TaqII GACCGA 1 cut(s) 230
TauI GCSGC 4 cut(s) 309, 648, 987, 1359
Tru1I TTAA 8 cut(s) 42, 138, 393, 732, 1071, 1443, 1452, 1521
Tru9I TTAA 8 cut(s) 42, 138, 393, 732, 1071, 1443, 1452, 1521
TscAI CASTG 1 cut(s) 1501
TseFI GTSAC 6 cut(s) 121, 376, 715, 1054, 1426, 1615
Tsp45I GTSAC 6 cut(s) 121, 376, 715, 1054, 1426, 1615
TspDTI ATGAA 2 cut(s) 36, 1653
TspRI CASTG 1 cut(s) 1501
XapI RAATTY 4 cut(s) 23, 509, 848, 1187
XspI CTAG 3 cut(s) 471, 810, 1149
Zsp2I ATGCAT 3 cut(s) 502, 841, 1180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.