Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010583

Physical Location & Seq

Genomic Coordinates Forward (+)

20156410 .. 20157977

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGGAATTTTGGTGCCAGACGACGCCAAACAAGTAATGGAGAATACTCAATTAACTACATCAGGATCCAAAATAGAAAGGAGGGTAATTGAGAAGAACAGAAGAAACCACATGAAAATCCTCTACTCCCAACTCAACTCTCTCCTCCCAAATCAACACTCCAAGGAACCTGTGAGTCTGCCTGAACAAATAGATGAAGCCATTAACTACATCAAAACCCTGGAGTCGAATATGCAGAAACTCAAGCAGAAAAGAGACAACCTAAAGATTGGTAGGAAAAGATCATATGAATTATGCAGCAGCAGTAGCAGCACCAGATCAGCAGCTGCCACTAGTACTGCGAAATCGCCGCAAATTCAAATCCATGAGATTGGTTCCACCCTAGAGGTTGTTTTGAGTACTGGACTACACAATCAGTTCATCTTCTACGATATAATTCGTATACTTGACCAAGAACAAGCAGATGTCGTACATGCTAGCTTTTCAGCTTCCGGAGACTCTATACTTCACCTAGTGCGTGCAGAGATGGGCAACTTGATTCTTGATTTTGGGGCAGCGAAAATAACTGAGAAGCTGAAAAGAATTGTCTATGGATCCGCCAGCGATGAAGAACTACAGCATGATGATCATAATCAAGACTACTACTTGTGGGACTTCCAGATCCATCCTCAGATGTGGGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

229

Amino Acids

26.01

Weight (kDa)

6.14

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	26 - 75	1.3e-08	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g26360 FvH4_6g26360
malus_domestica	MD09G1233000.v1.1 MD17G1237900.v1.1 MD17G1238500.v1.1 MD17G1238600.v1.1
prunus_persica	Prupe.3G131500_v2.0.a1
pyrus_communis	pycom09g16340 pycom17g24260
rosa_chinensis	RchiOBHm_Chr2g0126861
rosa_laevigata	RLG00000018923
rosa_multiflora	Rmu_sc0000007.1_g000017
rosa_roxburghii	Rroxscaffold_2G00116960
rosa_rugosa	Rorug02G0264800 Rorug02G0264900 Rorug02G0265000
rosa_samantha	Rh2AG322000 Rh2BG330100 Rh2CG310000 Rh2DG349400
rosa_wichuraiana	Rw2G026100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	13
AccI	GTMKAC	1 cut(s)	442
AccIII	TCCGGA	1 cut(s)	491
AciI	CCGC	2 cut(s)	350, 597
AclWI	GGATC	5 cut(s)	60, 73, 588, 601, 655
AcsI	RAATTY	2 cut(s)	6, 354
AcyI	GRCGYC	1 cut(s)	24
AdeI	CACNNNGTG	1 cut(s)	514
AfaI	GTAC	3 cut(s)	337, 400, 471
AgsI	TTSAA	1 cut(s)	359
AhlI	ACTAGT	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	4 cut(s)	326, 480, 488, 574
AluI	AGCT	4 cut(s)	326, 480, 488, 574
Alw26I	GTCTC	2 cut(s)	249, 489
AlwI	GGATC	5 cut(s)	60, 73, 588, 601, 655
AlwNI	CAGNNNCTG	1 cut(s)	326
Aor13HI	TCCGGA	1 cut(s)	491
ApeKI	GCWGC	6 cut(s)	297, 300, 309, 323, 326, 554
ApoI	RAATTY	2 cut(s)	6, 354
AsuHPI	GGTGA	1 cut(s)	500
AsuNHI	GCTAGC	1 cut(s)	476
BamHI	GGATCC	2 cut(s)	65, 593
BanI	GGYRCC	1 cut(s)	13
BbvI	GCAGC	6 cut(s)	309, 312, 313, 321, 335, 566
BccI	CCATC	2 cut(s)	520, 672
BciT130I	CCWGG	1 cut(s)	221
BclI	TGATCA	1 cut(s)	625
BcoDI	GTCTC	2 cut(s)	249, 489
BcuI	ACTAGT	1 cut(s)	332
BfaI	CTAG	4 cut(s)	333, 383, 477, 512
BfmI	CTRYAG	1 cut(s)	614
BisI	GCNGC	7 cut(s)	298, 301, 310, 324, 327, 350, 555
BlsI	GCNGC	7 cut(s)	299, 302, 311, 325, 328, 351, 556
BmcAI	AGTACT	2 cut(s)	337, 400
Bme1390I	CCNGG	1 cut(s)	221
BmiI	GGNNCC	5 cut(s)	15, 67, 168, 376, 595
BmrFI	CCNGG	1 cut(s)	221
BmtI	GCTAGC	1 cut(s)	480
BpmI	CTGGAG	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	630
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	162, 219
BsaWI	WCCGGW	1 cut(s)	491
Bse1I	ACTGG	1 cut(s)	406
Bse8I	GATNNNNATC	1 cut(s)	630
BseAI	TCCGGA	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	162, 219
BseGI	GGATG	1 cut(s)	664
BseJI	GATNNNNATC	1 cut(s)	630
BseMII	CTCAG	2 cut(s)	558, 683
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	6 cut(s)	309, 312, 313, 321, 335, 566
BsgI	GTGCAG	1 cut(s)	540
BshNI	GGYRCC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	665
BsmAI	GTCTC	2 cut(s)	249, 489
BsmFI	GGGAC	1 cut(s)	665
Bsp13I	TCCGGA	1 cut(s)	491
Bsp143I	GATC	6 cut(s)	65, 281, 317, 593, 625, 660
BspACI	CCGC	2 cut(s)	350, 597
BspCNI	CTCAG	2 cut(s)	559, 682
BspEI	TCCGGA	1 cut(s)	491
BspLI	GGNNCC	5 cut(s)	15, 67, 168, 376, 595
BspOI	GCTAGC	1 cut(s)	480
BspPI	GGATC	5 cut(s)	60, 73, 588, 601, 655
BspT107I	GGYRCC	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	2 cut(s)	162, 219
BssMI	GATC	6 cut(s)	65, 281, 317, 593, 625, 660
BssNAI	GTATAC	1 cut(s)	443
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	162
Bst1107I	GTATAC	1 cut(s)	443
Bst2UI	CCWGG	1 cut(s)	221
BstACI	GRCGYC	1 cut(s)	24
BstC8I	GCNNGC	3 cut(s)	478, 519, 601
BstDEI	CTNAG	2 cut(s)	567, 669
BstF5I	GGATG	1 cut(s)	664
BstKTI	GATC	6 cut(s)	68, 284, 320, 596, 628, 663
BstMAI	GTCTC	2 cut(s)	249, 489
BstMBI	GATC	6 cut(s)	65, 281, 317, 593, 625, 660
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 309
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	614
BstV1I	GCAGC	6 cut(s)	309, 312, 313, 321, 335, 566
BstX2I	RGATCY	3 cut(s)	65, 593, 660
BstXI	CCANNNNNNTGG	1 cut(s)	371
BstYI	RGATCY	3 cut(s)	65, 593, 660
BstZ17I	GTATAC	1 cut(s)	443
BtgZI	GCGATG	1 cut(s)	618
BtsCI	GGATG	1 cut(s)	664
Cac8I	GCNNGC	3 cut(s)	478, 519, 601
CaiI	CAGNNNCTG	1 cut(s)	326
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	3 cut(s)	336, 399, 470
CviAII	CATG	4 cut(s)	112, 365, 473, 620
CviJI	RGCY	5 cut(s)	200, 326, 480, 488, 574
CviKI_1	RGCY	5 cut(s)	200, 326, 480, 488, 574
CviQI	GTAC	3 cut(s)	336, 399, 470
DdeI	CTNAG	2 cut(s)	567, 669
DpnI	GATC	6 cut(s)	67, 283, 319, 595, 627, 662
DpnII	GATC	6 cut(s)	65, 281, 317, 593, 625, 660
DraIII	CACNNNGTG	1 cut(s)	514
EciI	GGCGGA	1 cut(s)	586
Eco130I	CCWWGG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	4 cut(s)	115, 368, 476, 623
FaqI	GGGAC	1 cut(s)	665
FatI	CATG	4 cut(s)	111, 364, 472, 619
FauNDI	CATATG	1 cut(s)	286
FbaI	TGATCA	1 cut(s)	625
FblI	GTMKAC	1 cut(s)	442
Fnu4HI	GCNGC	7 cut(s)	298, 301, 310, 324, 327, 350, 555
FokI	GGATG	1 cut(s)	651
Fsp4HI	GCNGC	7 cut(s)	298, 301, 310, 324, 327, 350, 555
FspBI	CTAG	4 cut(s)	333, 383, 477, 512
GluI	GCNGC	7 cut(s)	298, 301, 310, 324, 327, 350, 555
GsuI	CTGGAG	1 cut(s)	242
HapII	CCGG	1 cut(s)	492
HgaI	GACGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	4 cut(s)	115, 368, 476, 623
HinfI	GANTC	4 cut(s)	175, 224, 497, 538
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	2 cut(s)	672, 686
Hpy188III	TCNNGA	5 cut(s)	63, 492, 542, 635, 658
Hpy8I	GTNNAC	1 cut(s)	443
Hpy99I	CGWCG	1 cut(s)	26
HpyCH4V	TGCA	3 cut(s)	235, 297, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 309
HpyF3I	CTNAG	2 cut(s)	567, 669
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	4 cut(s)	115, 368, 476, 623
Kpn2I	TCCGGA	1 cut(s)	491
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	6 cut(s)	65, 281, 317, 593, 625, 660
Lsp1109I	GCAGC	6 cut(s)	309, 312, 313, 321, 335, 566
MaeI	CTAG	4 cut(s)	333, 383, 477, 512
MalI	GATC	6 cut(s)	67, 283, 319, 595, 627, 662
MboI	GATC	6 cut(s)	65, 281, 317, 593, 625, 660
MboII	GAAGA	4 cut(s)	106, 114, 415, 620
MflI	RGATCY	3 cut(s)	65, 593, 660
MluCI	AATT	7 cut(s)	6, 50, 87, 290, 354, 435, 582
MlyI	GAGTC	3 cut(s)	184, 233, 491
MnlI	CCTC	5 cut(s)	75, 131, 155, 379, 678
MroI	TCCGGA	1 cut(s)	491
MseI	TTAA	2 cut(s)	53, 204
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	306, 309
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	6 cut(s)	65, 281, 317, 593, 625, 660
NheI	GCTAGC	1 cut(s)	476
NlaIII	CATG	4 cut(s)	115, 368, 476, 623
NlaIV	GGNNCC	5 cut(s)	15, 67, 168, 376, 595
NspI	RCATGY	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	538
PkrI	GCNGC	7 cut(s)	299, 302, 311, 325, 328, 351, 556
PleI	GAGTC	3 cut(s)	183, 232, 491
PpsI	GAGTC	3 cut(s)	183, 232, 491
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	5 cut(s)	15, 67, 168, 376, 595
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	3 cut(s)	65, 593, 660
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	3 cut(s)	337, 400, 471
RsaNI	GTAC	3 cut(s)	336, 399, 470
SaqAI	TTAA	2 cut(s)	53, 204
SatI	GCNGC	7 cut(s)	298, 301, 310, 324, 327, 350, 555
Sau3AI	GATC	6 cut(s)	65, 281, 317, 593, 625, 660
ScaI	AGTACT	2 cut(s)	337, 400
SchI	GAGTC	3 cut(s)	184, 233, 491
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	8 cut(s)	172, 264, 328, 390, 482, 490, 513, 576
SfcI	CTRYAG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SpeI	ACTAGT	1 cut(s)	332
Sse9I	AATT	7 cut(s)	6, 50, 87, 290, 354, 435, 582
SsiI	CCGC	2 cut(s)	350, 597
SspMI	CTAG	4 cut(s)	333, 383, 477, 512
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	162
TaqI	TCGA	1 cut(s)	227
TasI	AATT	7 cut(s)	6, 50, 87, 290, 354, 435, 582
TatI	WGTACW	2 cut(s)	335, 398
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	2 cut(s)	53, 204
Tru9I	TTAA	2 cut(s)	53, 204
TseI	GCWGC	6 cut(s)	297, 300, 309, 323, 326, 554
TspDTI	ATGAA	5 cut(s)	128, 210, 303, 409, 621
XapI	RAATTY	2 cut(s)	6, 354
XceI	RCATGY	1 cut(s)	476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	442
XspI	CTAG	4 cut(s)	333, 383, 477, 512
ZrmI	AGTACT	2 cut(s)	337, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.