MD17G1238600.v1.1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0010583
Physical Location & Seq
Reverse (-)
28779955 .. 28781079
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1238600.v1.1.491

Sequence Viewer

Length: 702 bp
ATGGGAATCTCTGTGGCCAACTTGCCAGAGAAAGTTCAAATGAATAATAACCAAGCAAGTCAATCTTCTTCAACCAAAGTTGAAAGGAGGGTTGTAGAGAAGAACAGGAGAAATCATTTGAAACTTCTTTACTCCAAGCTCTACTCTCTCCTCCCTAACCAAAATCCTAAGGAGCCACCGAGTCTGAACGAACAAACAGATGAGGCCATCAACTACATAAAAAGCAAAGAGTCGAAGCTGCAGAAAGCAAAGGAGAAGAAAGAGAGCTTAATGGGCACTAGAAAAAGATCAAATGCTACAGCATTCGTAAACGTTGAGAGCATGGAACCAAAAACCTTAAACATTGAGAGCGTAAGGAGCACAAAAGCACCCCAAATCCAAATCCATGAGACAGGATCCACAGTTGAGGTAGTACTGACTAGTGGCTTAGAGAATCATCAGTTCATCTTCTACCAAATTATTCGCATACTTGACGAAGAACAGGCGGACATCGTGCATGCTAGCTTTTCAACTTTGGGAGACACTGTATTTCATGTAGTACGCGCAGAGATGGACAACTCTATGTTGGATTTTGGGGCTGCAAGAATAACTGAAAAGCTTAATACATTTGTCAATGGATCTACCAGCGACCAAGAATTACGGCAAGATTGCTTTTGGGACTGCGAATTCGAGCCTGCGGAAATAATATGGGATCAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

234

Amino Acids

26.54

Weight (kDa)

5.65

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 543
AciI CCGC 2 cut(s) 485, 677
AclI AACGTT 1 cut(s) 312
AclWI GGATC 4 cut(s) 390, 403, 625, 699
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 1 cut(s) 665
AfaI GTAC 2 cut(s) 414, 540
AgsI TTSAA 5 cut(s) 38, 72, 83, 121, 510
AhlI ACTAGT 1 cut(s) 419
AluBI AGCT 5 cut(s) 139, 238, 267, 504, 598
AluI AGCT 5 cut(s) 139, 238, 267, 504, 598
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 2 cut(s) 383, 513
AlwI GGATC 4 cut(s) 390, 403, 625, 699
AoxI GGCC 2 cut(s) 15, 204
ApeKI GCWGC 2 cut(s) 238, 578
ApoI RAATTY 1 cut(s) 665
ArsI GACNNNNNNTTYG 2 cut(s) 650, 682
AspLEI GCGC 1 cut(s) 545
AsuNHI GCTAGC 1 cut(s) 500
AxyI CCTNAGG 1 cut(s) 168
BaeGI GKGCMC 1 cut(s) 278
BalI TGGCCA 1 cut(s) 17
BamHI GGATCC 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 362
BbvI GCAGC 2 cut(s) 225, 565
BccI CCATC 2 cut(s) 215, 544
BceAI ACGGC 1 cut(s) 656
BcoDI GTCTC 2 cut(s) 383, 513
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 3 cut(s) 279, 420, 501
BfmI CTRYAG 2 cut(s) 239, 297
BisI GCNGC 2 cut(s) 239, 579
BlsI GCNGC 2 cut(s) 240, 580
BmcAI AGTACT 1 cut(s) 414
BmiI GGNNCC 3 cut(s) 174, 327, 397
BmtI GCTAGC 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bse21I CCTNAGG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 278
BseXI GCAGC 2 cut(s) 225, 565
Bsh1236I CGCG 1 cut(s) 543
BshFI GGCC 2 cut(s) 17, 206
BsiHKAI GWGCWC 1 cut(s) 362
BslFI GGGAC 1 cut(s) 671
BsmAI GTCTC 2 cut(s) 383, 513
BsmFI GGGAC 1 cut(s) 671
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 2 cut(s) 17, 206
Bsp1286I GDGCHC 2 cut(s) 278, 362
Bsp143I GATC 4 cut(s) 287, 395, 617, 691
BspACI CCGC 2 cut(s) 485, 677
BspANI GGCC 2 cut(s) 17, 206
BspFNI CGCG 1 cut(s) 543
BspLI GGNNCC 3 cut(s) 174, 327, 397
BspMAI CTGCAG 1 cut(s) 243
BspOI GCTAGC 1 cut(s) 504
BspPI GGATC 4 cut(s) 390, 403, 625, 699
BssMI GATC 4 cut(s) 287, 395, 617, 691
Bst4CI ACNGT 2 cut(s) 403, 526
BstC8I GCNNGC 3 cut(s) 498, 502, 675
BstDEI CTNAG 2 cut(s) 168, 427
BstFNI CGCG 1 cut(s) 543
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 4 cut(s) 290, 398, 620, 694
BstMAI GTCTC 2 cut(s) 383, 513
BstMBI GATC 4 cut(s) 287, 395, 617, 691
BstMWI GCNNNNNNNGC 2 cut(s) 273, 357
BstNSI RCATGY 1 cut(s) 500
BstSFI CTRYAG 2 cut(s) 239, 297
BstSLI GKGCMC 1 cut(s) 278
BstUI CGCG 1 cut(s) 543
BstV1I GCAGC 2 cut(s) 225, 565
BstX2I RGATCY 2 cut(s) 395, 617
BstYI RGATCY 2 cut(s) 395, 617
Bsu36I CCTNAGG 1 cut(s) 168
BsuRI GGCC 2 cut(s) 17, 206
BtsIMutI CAGTG 1 cut(s) 522
Cac8I GCNNGC 3 cut(s) 498, 502, 675
CfoI GCGC 1 cut(s) 545
Csp6I GTAC 2 cut(s) 413, 539
CviAII CATG 4 cut(s) 322, 386, 497, 533
CviQI GTAC 2 cut(s) 413, 539
DdeI CTNAG 2 cut(s) 168, 427
DpnI GATC 4 cut(s) 289, 397, 619, 693
DpnII GATC 4 cut(s) 287, 395, 617, 691
EaeI YGGCCR 1 cut(s) 15
EciI GGCGGA 1 cut(s) 500
Eco81I CCTNAGG 1 cut(s) 168
EcoRI GAATTC 1 cut(s) 665
FaeI CATG 4 cut(s) 325, 389, 500, 536
FaiI YATR 8 cut(s) 218, 323, 387, 467, 498, 534, 563, 688
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FaqI GGGAC 1 cut(s) 671
FatI CATG 4 cut(s) 321, 385, 496, 532
Fnu4HI GCNGC 2 cut(s) 239, 579
Fsp4HI GCNGC 2 cut(s) 239, 579
FspBI CTAG 3 cut(s) 279, 420, 501
GlaI GCGC 1 cut(s) 544
GluI GCNGC 2 cut(s) 239, 579
HaeIII GGCC 2 cut(s) 17, 206
HhaI GCGC 1 cut(s) 545
Hin1II CATG 4 cut(s) 325, 389, 500, 536
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 4 cut(s) 6, 181, 230, 433
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 186
Hpy8I GTNNAC 1 cut(s) 310
HpyCH4III ACNGT 2 cut(s) 403, 526
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 3 cut(s) 241, 496, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 273, 357
HpyF3I CTNAG 2 cut(s) 168, 427
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 4 cut(s) 325, 389, 500, 536
HspAI GCGC 1 cut(s) 543
Kzo9I GATC 4 cut(s) 287, 395, 617, 691
LmnI GCTCC 2 cut(s) 172, 357
LpnPI CCDG 7 cut(s) 39, 91, 378, 467, 637, 680, 687
Lsp1109I GCAGC 2 cut(s) 225, 565
MaeI CTAG 3 cut(s) 279, 420, 501
MaeII ACGT 1 cut(s) 312
MalI GATC 4 cut(s) 289, 397, 619, 693
MboI GATC 4 cut(s) 287, 395, 617, 691
MboII GAAGA 6 cut(s) 57, 60, 112, 268, 439, 488
MflI RGATCY 2 cut(s) 395, 617
MhlI GDGCHC 2 cut(s) 278, 362
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 3 cut(s) 456, 635, 665
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 2 cut(s) 190, 239
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 4 cut(s) 81, 161, 196, 400
Mox20I TGGCCA 1 cut(s) 17
MscI TGGCCA 1 cut(s) 17
MseI TTAA 3 cut(s) 269, 338, 600
Msp20I TGGCCA 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 302
MvnI CGCG 1 cut(s) 543
MwoI GCNNNNNNNGC 2 cut(s) 273, 357
NdeII GATC 4 cut(s) 287, 395, 617, 691
NheI GCTAGC 1 cut(s) 500
NlaIII CATG 4 cut(s) 325, 389, 500, 536
NlaIV GGNNCC 3 cut(s) 174, 327, 397
NspI RCATGY 1 cut(s) 500
PaeI GCATGC 1 cut(s) 500
PctI GAATGC 1 cut(s) 302
PfeI GAWTC 2 cut(s) 6, 433
PkrI GCNGC 2 cut(s) 240, 580
PleI GAGTC 2 cut(s) 189, 238
PpsI GAGTC 2 cut(s) 189, 238
Psp1406I AACGTT 1 cut(s) 312
PspN4I GGNNCC 3 cut(s) 174, 327, 397
PstI CTGCAG 1 cut(s) 243
PsuI RGATCY 2 cut(s) 395, 617
RsaI GTAC 2 cut(s) 414, 540
RsaNI GTAC 2 cut(s) 413, 539
SaqAI TTAA 3 cut(s) 269, 338, 600
SatI GCNGC 2 cut(s) 239, 579
Sau3AI GATC 4 cut(s) 287, 395, 617, 691
ScaI AGTACT 1 cut(s) 414
SchI GAGTC 2 cut(s) 190, 239
SduI GDGCHC 2 cut(s) 278, 362
SetI ASST 9 cut(s) 141, 240, 269, 315, 338, 411, 506, 600, 699
SfcI CTRYAG 2 cut(s) 239, 297
SpeI ACTAGT 1 cut(s) 419
SphI GCATGC 1 cut(s) 500
Sse9I AATT 3 cut(s) 456, 635, 665
SsiI CCGC 2 cut(s) 485, 677
SspMI CTAG 3 cut(s) 279, 420, 501
TaaI ACNGT 2 cut(s) 403, 526
TaiI ACGT 1 cut(s) 315
TaqI TCGA 2 cut(s) 233, 669
TasI AATT 3 cut(s) 456, 635, 665
TatI WGTACW 1 cut(s) 412
TfiI GAWTC 2 cut(s) 6, 433
Tru1I TTAA 3 cut(s) 269, 338, 600
Tru9I TTAA 3 cut(s) 269, 338, 600
TscAI CASTG 1 cut(s) 529
TseI GCWGC 2 cut(s) 238, 578
TspDTI ATGAA 3 cut(s) 56, 433, 521
TspRI CASTG 1 cut(s) 529
XapI RAATTY 1 cut(s) 665
XceI RCATGY 1 cut(s) 500
XspI CTAG 3 cut(s) 279, 420, 501
ZrmI AGTACT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.