Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010583

Physical Location & Seq

Genomic Coordinates Reverse (-)

16584208 .. 16585192

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGAATCTTTGTGGCCAACTTGCCAGAGAAAGATCAAATGAATAATAACCAGGCAAGTCAATCTTCTTCAACCAAAATTGAAAGGAGGGTTGTAGAGAAGAATAGGAGAAATCTTATGAAACTTCTTTACTCCAACCTCTTCTCTCTCCTCCCTAACCAAAATCCTAAGGAGCCATTAACTCTGCCCGAACAAATAGATGAGGCCATCAACTACATAAAAAGCAAAGAGTCGAAGCTGCAGAAATCAAGGGAGAAGAAGGAGAGTTTGGTGGGCACTAGAAAAAGATCACATGCTACATCATTCATAAATGCTGAGAGCATGGAACCAAAAAACTTAAGTATTGAGAGCGTAAGGAGCACAAAAGCACCCCAAATCCAAATCCATGAGACAGGCTCCACAGTAGAGGTGGTACTGACTACTGGCTTAGACAATCATCAGTTCATCTTCTACGAAATTCTTCGCATACTTGACGAAGAACAGGTGGACGTCGTGCATGCTAGCTTTTCAACTTTGGGAGACACTGTATTTCATGTAGTACGTGCAGAGATGCGCAAGTCTGTGTTGGATTTTGGGGCTGCAAGAATAACTGAAAAGCTTAATAGATTTGTCAATGGATCCACCAGAGACCAAGAATTACAGCAAGATTGCTTTTGGGACTTCGAATTGGAGCCTGTGGCAATAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

230

Amino Acids

26.22

Weight (kDa)

6.25

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g26360 FvH4_6g26360
malus_domestica	MD09G1233000.v1.1 MD17G1237900.v1.1 MD17G1238500.v1.1 MD17G1238600.v1.1
prunus_persica	Prupe.3G131500_v2.0.a1
pyrus_communis	pycom09g16340 pycom17g24260
rosa_chinensis	RchiOBHm_Chr2g0126861
rosa_laevigata	RLG00000018923
rosa_multiflora	Rmu_sc0000007.1_g000017
rosa_roxburghii	Rroxscaffold_2G00116960
rosa_rugosa	Rorug02G0264800 Rorug02G0264900 Rorug02G0265000
rosa_samantha	Rh2AG322000 Rh2BG330100 Rh2CG310000 Rh2DG349400
rosa_wichuraiana	Rw2G026100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	492
Acc16I	TGCGCA	1 cut(s)	554
AclWI	GGATC	2 cut(s)	612, 625
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	456
AcyI	GRCGYC	1 cut(s)	489
AfaI	GTAC	2 cut(s)	414, 540
AflII	CTTAAG	1 cut(s)	337
AgsI	TTSAA	3 cut(s)	72, 83, 510
AjnI	CCWGG	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	3 cut(s)	238, 504, 598
AluI	AGCT	3 cut(s)	238, 504, 598
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	3 cut(s)	383, 513, 621
AlwI	GGATC	2 cut(s)	612, 625
AoxI	GGCC	2 cut(s)	15, 204
ApeKI	GCWGC	2 cut(s)	238, 578
ApoI	RAATTY	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	459
AspLEI	GCGC	1 cut(s)	555
AsuII	TTCGAA	1 cut(s)	663
AsuNHI	GCTAGC	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	617
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	225, 565
BccI	CCATC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	53
BcoDI	GTCTC	3 cut(s)	383, 513, 621
BfaI	CTAG	2 cut(s)	279, 501
BfmI	CTRYAG	1 cut(s)	239
BfrI	CTTAAG	1 cut(s)	337
BisI	GCNGC	2 cut(s)	239, 579
BlsI	GCNGC	2 cut(s)	240, 580
Bme1390I	CCNGG	1 cut(s)	53
BmiI	GGNNCC	5 cut(s)	174, 327, 397, 619, 672
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	540
BmtI	GCTAGC	1 cut(s)	504
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
Bpu14I	TTCGAA	1 cut(s)	663
BsaAI	YACGTR	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	621
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bse1I	ACTGG	1 cut(s)	427
Bse21I	CCTNAGG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	225, 565
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	2 cut(s)	17, 206
BsiHKAI	GWGCWC	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	671
BsmAI	GTCTC	3 cut(s)	383, 513, 621
BsmFI	GGGAC	1 cut(s)	671
BsnI	GGCC	2 cut(s)	17, 206
Bso31I	GGTCTC	1 cut(s)	621
Bsp119I	TTCGAA	1 cut(s)	663
Bsp1286I	GDGCHC	2 cut(s)	278, 362
Bsp143I	GATC	3 cut(s)	34, 287, 617
BspANI	GGCC	2 cut(s)	17, 206
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	5 cut(s)	174, 327, 397, 619, 672
BspMAI	CTGCAG	1 cut(s)	243
BspOI	GCTAGC	1 cut(s)	504
BspPI	GGATC	2 cut(s)	612, 625
BspT104I	TTCGAA	1 cut(s)	663
BspTI	CTTAAG	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	621
BsrI	ACTGG	1 cut(s)	427
BssMI	GATC	3 cut(s)	34, 287, 617
BssNI	GRCGYC	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	403, 526
Bst6I	CTCTTC	1 cut(s)	146
BstACI	GRCGYC	1 cut(s)	489
BstAFI	CTTAAG	1 cut(s)	337
BstBAI	YACGTR	1 cut(s)	542
BstBI	TTCGAA	1 cut(s)	663
BstC8I	GCNNGC	2 cut(s)	498, 502
BstDEI	CTNAG	3 cut(s)	168, 315, 427
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	3 cut(s)	37, 290, 620
BstMAI	GTCTC	3 cut(s)	383, 513, 621
BstMBI	GATC	3 cut(s)	34, 287, 617
BstMWI	GCNNNNNNNGC	1 cut(s)	357
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	2 cut(s)	296, 500
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	239
BstSLI	GKGCMC	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	225, 565
BstX2I	RGATCY	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	617
Bsu36I	CCTNAGG	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	17, 206
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	2 cut(s)	498, 502
CfoI	GCGC	1 cut(s)	555
Csp6I	GTAC	2 cut(s)	413, 539
CviAII	CATG	5 cut(s)	293, 322, 386, 497, 533
CviQI	GTAC	2 cut(s)	413, 539
DdeI	CTNAG	3 cut(s)	168, 315, 427
DpnI	GATC	3 cut(s)	36, 289, 619
DpnII	GATC	3 cut(s)	34, 287, 617
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	621
Eco81I	CCTNAGG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	51
FaeI	CATG	5 cut(s)	296, 325, 389, 500, 536
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	5 cut(s)	292, 321, 385, 496, 532
Fnu4HI	GCNGC	2 cut(s)	239, 579
Fsp4HI	GCNGC	2 cut(s)	239, 579
FspBI	CTAG	2 cut(s)	279, 501
FspI	TGCGCA	1 cut(s)	554
GlaI	GCGC	1 cut(s)	554
GluI	GCNGC	2 cut(s)	239, 579
HaeIII	GGCC	2 cut(s)	17, 206
HhaI	GCGC	1 cut(s)	555
Hin1I	GRCGYC	1 cut(s)	489
Hin1II	CATG	5 cut(s)	296, 325, 389, 500, 536
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	2 cut(s)	6, 230
Hpy166II	GTNNAC	1 cut(s)	487
Hpy8I	GTNNAC	1 cut(s)	487
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	2 cut(s)	403, 526
HpyCH4IV	ACGT	2 cut(s)	489, 541
HpyCH4V	TGCA	4 cut(s)	241, 496, 545, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	357
HpyF3I	CTNAG	3 cut(s)	168, 315, 427
HpySE526I	ACGT	2 cut(s)	489, 541
Hsp92I	GRCGYC	1 cut(s)	489
Hsp92II	CATG	5 cut(s)	296, 325, 389, 500, 536
HspAI	GCGC	1 cut(s)	553
Kzo9I	GATC	3 cut(s)	34, 287, 617
LmnI	GCTCC	4 cut(s)	172, 357, 401, 670
LpnPI	CCDG	7 cut(s)	38, 39, 65, 378, 408, 467, 637
Lsp1109I	GCAGC	2 cut(s)	225, 565
LweI	GCATC	1 cut(s)	540
MaeI	CTAG	2 cut(s)	279, 501
MaeII	ACGT	2 cut(s)	489, 541
MalI	GATC	3 cut(s)	36, 289, 619
MboI	GATC	3 cut(s)	34, 287, 617
MboII	GAAGA	8 cut(s)	57, 60, 112, 133, 268, 439, 452, 488
MflI	RGATCY	1 cut(s)	617
MhlI	GDGCHC	2 cut(s)	278, 362
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	4 cut(s)	78, 456, 635, 665
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	2 cut(s)	159, 546
MnlI	CCTC	5 cut(s)	81, 149, 161, 196, 400
Mox20I	TGGCCA	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	459
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	3 cut(s)	179, 338, 600
Msp20I	TGGCCA	1 cut(s)	17
MspCI	CTTAAG	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	357
NdeII	GATC	3 cut(s)	34, 287, 617
NheI	GCTAGC	1 cut(s)	500
NlaIII	CATG	5 cut(s)	296, 325, 389, 500, 536
NlaIV	GGNNCC	5 cut(s)	174, 327, 397, 619, 672
NsbI	TGCGCA	1 cut(s)	554
NspI	RCATGY	2 cut(s)	296, 500
NspV	TTCGAA	1 cut(s)	663
PaeI	GCATGC	1 cut(s)	500
PdmI	GAANNNNTTC	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	240, 580
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Ppu21I	YACGTR	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	5 cut(s)	174, 327, 397, 619, 672
PstI	CTGCAG	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	617
RsaI	GTAC	2 cut(s)	414, 540
RsaNI	GTAC	2 cut(s)	413, 539
SaqAI	TTAA	3 cut(s)	179, 338, 600
SatI	GCNGC	2 cut(s)	239, 579
Sau3AI	GATC	3 cut(s)	34, 287, 617
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	2 cut(s)	278, 362
SetI	ASST	8 cut(s)	141, 240, 411, 486, 492, 506, 544, 600
SfaNI	GCATC	1 cut(s)	540
SfcI	CTRYAG	1 cut(s)	239
SfuI	TTCGAA	1 cut(s)	663
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
SphI	GCATGC	1 cut(s)	500
Sse9I	AATT	4 cut(s)	78, 456, 635, 665
SspMI	CTAG	2 cut(s)	279, 501
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	403, 526
TaiI	ACGT	2 cut(s)	492, 544
TaqI	TCGA	2 cut(s)	233, 663
TasI	AATT	4 cut(s)	78, 456, 635, 665
TfiI	GAWTC	1 cut(s)	6
Tru1I	TTAA	3 cut(s)	179, 338, 600
Tru9I	TTAA	3 cut(s)	179, 338, 600
TscAI	CASTG	1 cut(s)	529
TseI	GCWGC	2 cut(s)	238, 578
TspDTI	ATGAA	5 cut(s)	56, 134, 295, 433, 521
TspRI	CASTG	1 cut(s)	529
Vha464I	CTTAAG	1 cut(s)	337
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	2 cut(s)	296, 500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	2 cut(s)	279, 501
ZraI	GACGTC	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.