Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010583

Physical Location & Seq

Genomic Coordinates Reverse (-)

22565550 .. 22566618

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g24260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCTGATGTAACTTGGATGACGAGTAGAGTAGCTGAGACTCATATTATATGTTTCTGTGTGTGTGTGTGTGTGTGTCTATTTATATATGGTATTTTTACTTATTTGTGGCCAACTTGCCAGAGAATGGATCGTAATCAAGCAAATGAATCTTCTTCAACCAAAGTTGAAAGGAGGGTTGTTGAGAAGAACAGGAGAAATCGTATGAAACTTTTTTACTCCAATCTCTACTCCCTCCTCCCTAAACAAACTTTTAAGGAGCCACTAAGTCAGACAGAACAAATAGATGAAGCCATAAAGTACATAAAAAGCCAAGAGTCGAAGCTGCAGAAGTTAAAGGAGAAGAAGGAGAGCTTAATGCGCACTAGAAAAAGATCATATGCTACAGCATGCGTAAATGTTGAGAGCACAAGGAGCGCAAAAGCACCCCAAATCAAAATCCATGAGATAGACTCCACGCTAGAGGTAGTACTGATAAGTGGCTTAGAAAATCATCAGTTCATGTTCTACGAAATCATTCGCCTGCTTGACGCAGAACATGCCAACGTTGTGCATGCTAACTTTTCAACTTTGGGAGACTCAGTGTTTCACGGAGTCCGGGCAGAAATGGGCAAATCTATGTCCAAGTTTGGGGCTGCAAGAATAACTGAAAAACTTAACAGATTTGTCAATGGATCCACCAGCGACCAAGAATCACAGCAAGACTACTTTTGCGACTTCGAATTTCAGCCTGTGACGACATGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

250

Amino Acids

28.91

Weight (kDa)

8.56

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g26360 FvH4_6g26360
malus_domestica	MD09G1233000.v1.1 MD17G1237900.v1.1 MD17G1238500.v1.1 MD17G1238600.v1.1
prunus_persica	Prupe.3G131500_v2.0.a1
pyrus_communis	pycom09g16340 pycom17g24260
rosa_chinensis	RchiOBHm_Chr2g0126861
rosa_laevigata	RLG00000018923
rosa_multiflora	Rmu_sc0000007.1_g000017
rosa_roxburghii	Rroxscaffold_2G00116960
rosa_rugosa	Rorug02G0264800 Rorug02G0264900 Rorug02G0265000
rosa_samantha	Rh2AG322000 Rh2BG330100 Rh2CG310000 Rh2DG349400
rosa_wichuraiana	Rw2G026100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	362
AccB7I	CCANNNNNTGG	1 cut(s)	127
AclI	AACGTT	1 cut(s)	546
AclWI	GGATC	3 cut(s)	138, 669, 682
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	722
AfaI	GTAC	2 cut(s)	302, 471
AfiI	CCNNNNNNNGG	2 cut(s)	127, 630
AgsI	TTSAA	3 cut(s)	159, 170, 567
AluBI	AGCT	3 cut(s)	35, 325, 354
AluI	AGCT	3 cut(s)	35, 325, 354
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	2 cut(s)	32, 570
AlwI	GGATC	3 cut(s)	138, 669, 682
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	325, 635
ApoI	RAATTY	1 cut(s)	722
Asp700I	GAANNNNTTC	1 cut(s)	516
AspLEI	GCGC	2 cut(s)	363, 419
AsuC2I	CCSGG	1 cut(s)	599
AsuII	TTCGAA	1 cut(s)	720
BalI	TGGCCA	1 cut(s)	112
BamHI	GGATCC	1 cut(s)	674
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	312, 622
BcnI	CCSGG	1 cut(s)	599
BcoDI	GTCTC	2 cut(s)	32, 570
BfaI	CTAG	2 cut(s)	366, 461
BfmI	CTRYAG	2 cut(s)	326, 384
BisI	GCNGC	2 cut(s)	326, 636
BlsI	GCNGC	2 cut(s)	327, 637
BmcAI	AGTACT	1 cut(s)	471
Bme1390I	CCNGG	1 cut(s)	599
BmiI	GGNNCC	2 cut(s)	261, 676
BmrFI	CCNGG	1 cut(s)	599
BplI	GAGNNNNNCTC	2 cut(s)	437, 469
Bpu14I	TTCGAA	1 cut(s)	720
BpuMI	CCSGG	1 cut(s)	599
BsaBI	GATNNNNATC	1 cut(s)	135
BsaXI	ACNNNNNCTCC	4 cut(s)	187, 217, 567, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 630
Bse8I	GATNNNNATC	1 cut(s)	135
BseGI	GGATG	1 cut(s)	24
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	127, 630
BseMII	CTCAG	2 cut(s)	27, 594
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	312, 622
BshFI	GGCC	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	598
BslI	CCNNNNNNNGG	2 cut(s)	127, 630
BsmAI	GTCTC	2 cut(s)	32, 570
BsnI	GGCC	1 cut(s)	112
Bsp119I	TTCGAA	1 cut(s)	720
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	3 cut(s)	130, 374, 674
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	2 cut(s)	28, 593
BspLI	GGNNCC	2 cut(s)	261, 676
BspMAI	CTGCAG	1 cut(s)	330
BspPI	GGATC	3 cut(s)	138, 669, 682
BspT104I	TTCGAA	1 cut(s)	720
BssMI	GATC	3 cut(s)	130, 374, 674
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstBI	TTCGAA	1 cut(s)	720
BstC8I	GCNNGC	3 cut(s)	391, 524, 555
BstDEI	CTNAG	4 cut(s)	36, 266, 484, 580
BstF5I	GGATG	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	363, 419
BstKTI	GATC	3 cut(s)	133, 377, 677
BstMAI	GTCTC	2 cut(s)	32, 570
BstMBI	GATC	3 cut(s)	130, 374, 674
BstMWI	GCNNNNNNNGC	3 cut(s)	360, 414, 539
BstNSI	RCATGY	3 cut(s)	393, 542, 557
BstSCI	CCNGG	1 cut(s)	597
BstSFI	CTRYAG	2 cut(s)	326, 384
BstV1I	GCAGC	2 cut(s)	312, 622
BstX2I	RGATCY	1 cut(s)	674
BstYI	RGATCY	1 cut(s)	674
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	3 cut(s)	391, 524, 555
CfoI	GCGC	2 cut(s)	363, 419
CseI	GACGC	1 cut(s)	539
Csp6I	GTAC	2 cut(s)	301, 470
CviAII	CATG	6 cut(s)	390, 443, 502, 539, 554, 741
CviQI	GTAC	2 cut(s)	301, 470
DdeI	CTNAG	4 cut(s)	36, 266, 484, 580
DpnI	GATC	3 cut(s)	132, 376, 676
DpnII	GATC	3 cut(s)	130, 374, 674
EaeI	YGGCCR	1 cut(s)	110
FaeI	CATG	6 cut(s)	393, 446, 505, 542, 557, 744
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	6 cut(s)	389, 442, 501, 538, 553, 740
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	2 cut(s)	326, 636
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	326, 636
FspAI	RTGCGCAY	1 cut(s)	362
FspBI	CTAG	2 cut(s)	366, 461
FspI	TGCGCA	1 cut(s)	362
GlaI	GCGC	2 cut(s)	362, 418
GluI	GCNGC	2 cut(s)	326, 636
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	1 cut(s)	598
HgaI	GACGC	1 cut(s)	539
HhaI	GCGC	2 cut(s)	363, 419
Hin1II	CATG	6 cut(s)	393, 446, 505, 542, 557, 744
Hin6I	GCGC	2 cut(s)	361, 417
HinP1I	GCGC	2 cut(s)	361, 417
HinfI	GANTC	7 cut(s)	40, 149, 317, 452, 578, 594, 692
HpaII	CCGG	1 cut(s)	598
Hpy188I	TCNGA	1 cut(s)	273
HpyAV	CCTTC	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	3 cut(s)	328, 553, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	360, 414, 539
HpyF3I	CTNAG	4 cut(s)	36, 266, 484, 580
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	6 cut(s)	393, 446, 505, 542, 557, 744
HspAI	GCGC	2 cut(s)	361, 417
Kzo9I	GATC	3 cut(s)	130, 374, 674
LmnI	GCTCC	2 cut(s)	259, 414
LpnPI	CCDG	6 cut(s)	134, 178, 536, 611, 694, 744
Lsp1109I	GCAGC	2 cut(s)	312, 622
MaeI	CTAG	2 cut(s)	366, 461
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	2 cut(s)	10, 733
MalI	GATC	3 cut(s)	132, 376, 676
MboI	GATC	3 cut(s)	130, 374, 674
MboII	GAAGA	4 cut(s)	144, 147, 199, 355
MflI	RGATCY	1 cut(s)	674
MhlI	GDGCHC	1 cut(s)	410
MlsI	TGGCCA	1 cut(s)	112
MluCI	AATT	1 cut(s)	722
MluNI	TGGCCA	1 cut(s)	112
MlyI	GAGTC	5 cut(s)	34, 326, 446, 572, 603
MnlI	CCTC	4 cut(s)	168, 245, 248, 457
Mox20I	TGGCCA	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	112
MseI	TTAA	4 cut(s)	255, 335, 356, 657
Msp20I	TGGCCA	1 cut(s)	112
MspI	CCGG	1 cut(s)	598
MspR9I	CCNGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	3 cut(s)	360, 414, 539
NciI	CCSGG	1 cut(s)	599
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	3 cut(s)	130, 374, 674
NlaIII	CATG	6 cut(s)	393, 446, 505, 542, 557, 744
NlaIV	GGNNCC	2 cut(s)	261, 676
NmuCI	GTSAC	1 cut(s)	733
NsbI	TGCGCA	1 cut(s)	362
NspI	RCATGY	3 cut(s)	393, 542, 557
NspV	TTCGAA	1 cut(s)	720
PaeI	GCATGC	2 cut(s)	393, 557
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	149, 692
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	327, 637
PleI	GAGTC	5 cut(s)	34, 325, 446, 572, 602
PpsI	GAGTC	5 cut(s)	34, 325, 446, 572, 602
Psp1406I	AACGTT	1 cut(s)	546
PspN4I	GGNNCC	2 cut(s)	261, 676
PstI	CTGCAG	1 cut(s)	330
PsuI	RGATCY	1 cut(s)	674
RsaI	GTAC	2 cut(s)	302, 471
RsaNI	GTAC	2 cut(s)	301, 470
SaqAI	TTAA	4 cut(s)	255, 335, 356, 657
SatI	GCNGC	2 cut(s)	326, 636
Sau3AI	GATC	3 cut(s)	130, 374, 674
ScaI	AGTACT	1 cut(s)	471
SchI	GAGTC	5 cut(s)	34, 326, 446, 572, 603
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	1 cut(s)	410
SetI	ASST	5 cut(s)	37, 327, 356, 468, 549
SfcI	CTRYAG	2 cut(s)	326, 384
SfuI	TTCGAA	1 cut(s)	720
SphI	GCATGC	2 cut(s)	393, 557
Sse9I	AATT	1 cut(s)	722
SspMI	CTAG	2 cut(s)	366, 461
StyD4I	CCNGG	1 cut(s)	597
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	2 cut(s)	320, 720
TasI	AATT	1 cut(s)	722
TatI	WGTACW	2 cut(s)	300, 469
TfiI	GAWTC	2 cut(s)	149, 692
Tru1I	TTAA	4 cut(s)	255, 335, 356, 657
Tru9I	TTAA	4 cut(s)	255, 335, 356, 657
TscAI	CASTG	1 cut(s)	588
TseFI	GTSAC	1 cut(s)	733
TseI	GCWGC	2 cut(s)	325, 635
Tsp45I	GTSAC	1 cut(s)	733
TspDTI	ATGAA	4 cut(s)	162, 221, 303, 490
TspGWI	ACGGA	1 cut(s)	606
TspRI	CASTG	1 cut(s)	588
Van91I	CCANNNNNTGG	1 cut(s)	127
XapI	RAATTY	1 cut(s)	722
XceI	RCATGY	3 cut(s)	393, 542, 557
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	2 cut(s)	366, 461
ZrmI	AGTACT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.