Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010583

Physical Location & Seq

Genomic Coordinates Forward (+)

41432994 .. 41434209

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49880

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGAATTTTGGTGCTTAATTTGCAGCCCGACGTCAAACAAGTAATGGATAATACTCGAGCAACAACATCAGGAACCAAAGTAGAACGGAGGGTTATTGAGAAGAACAGGAGAAACCACATGAAAATCCTCTACTCCCACCTCAACTCTCTCCTCCCAAACCAAAATTCCAAGGAACCTCTGAGTCTGCCTGAACAAATAGATGAGGCAATTAACTATATCAAAACCCTGGAGTCGAATCTGCAGAAATCCAAGCAGAAAAGGGACAACCTAAAGTTTGGTAGGAAAAGATCATATGAATTATGCAGCAGCACCTTTGAGACCAGATCAGCTGCCCCCACAAAATCGCCGCAAATTCAAATCCATGAGAATGGTTCCACCCTAGAGGTTGTTTTGAGTACTGGCCTACACAATCAGTTCATCTTCTACGATATCATTCGCATACTTGACCAAGAACAAGCAGATGTAGTACATGCTAGCTTTTCAACTTCCGGAGACTCCATACTTCACCTAGTCCGTGCAGAGCTGGGCAAGTCGATGCTTGATTTTGGGGCAGCAAGAATAACTGAGAAGCTGAAAAGAATTGTCAATGGATCCGCAAGCGATGAAGAACTACAGCATGATGATCAAGACTACTTTTGGGACTTCCAAATCCATCCTCAGATGTGGGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

225

Amino Acids

25.86

Weight (kDa)

6.45

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	29 - 78	1.5e-08	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g26360 FvH4_6g26360
malus_domestica	MD09G1233000.v1.1 MD17G1237900.v1.1 MD17G1238500.v1.1 MD17G1238600.v1.1
prunus_persica	Prupe.3G131500_v2.0.a1
pyrus_communis	pycom09g16340 pycom17g24260
rosa_chinensis	RchiOBHm_Chr2g0126861
rosa_laevigata	RLG00000018923
rosa_multiflora	Rmu_sc0000007.1_g000017
rosa_roxburghii	Rroxscaffold_2G00116960
rosa_rugosa	Rorug02G0264800 Rorug02G0264900 Rorug02G0265000
rosa_samantha	Rh2AG322000 Rh2BG330100 Rh2CG310000 Rh2DG349400
rosa_wichuraiana	Rw2G026100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	36
AccIII	TCCGGA	1 cut(s)	491
AciI	CCGC	2 cut(s)	350, 597
AclWI	GGATC	2 cut(s)	588, 601
AcsI	RAATTY	3 cut(s)	6, 166, 354
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	2 cut(s)	400, 471
AgsI	TTSAA	2 cut(s)	359, 486
AjnI	CCWGG	1 cut(s)	228
AjuI	GAANNNNNNNTTGG	2 cut(s)	151, 183
AluBI	AGCT	4 cut(s)	332, 480, 526, 574
AluI	AGCT	4 cut(s)	332, 480, 526, 574
Alw26I	GTCTC	2 cut(s)	314, 489
AlwI	GGATC	2 cut(s)	588, 601
Ama87I	CYCGRG	1 cut(s)	57
Aor13HI	TCCGGA	1 cut(s)	491
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	5 cut(s)	25, 306, 309, 332, 554
ApoI	RAATTY	3 cut(s)	6, 166, 354
AsuHPI	GGTGA	1 cut(s)	500
AsuNHI	GCTAGC	1 cut(s)	476
AvaI	CYCGRG	1 cut(s)	57
BamHI	GGATCC	1 cut(s)	593
BbvI	GCAGC	5 cut(s)	37, 318, 319, 321, 566
BccI	CCATC	1 cut(s)	663
BciT130I	CCWGG	1 cut(s)	230
BclI	TGATCA	1 cut(s)	625
BcoDI	GTCTC	2 cut(s)	314, 489
BfaI	CTAG	3 cut(s)	383, 477, 512
BfmI	CTRYAG	2 cut(s)	242, 614
BisI	GCNGC	6 cut(s)	26, 307, 310, 333, 350, 555
BlsI	GCNGC	6 cut(s)	27, 308, 311, 334, 351, 556
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	57
BmiI	GGNNCC	4 cut(s)	76, 177, 376, 595
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	528
BmtI	GCTAGC	1 cut(s)	480
BpmI	CTGGAG	1 cut(s)	251
BsaHI	GRCGYC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	171, 228
BsaWI	WCCGGW	1 cut(s)	491
Bse1I	ACTGG	1 cut(s)	406
BseAI	TCCGGA	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	2 cut(s)	171, 228
BseGI	GGATG	1 cut(s)	655
BseMII	CTCAG	3 cut(s)	173, 558, 674
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	5 cut(s)	37, 318, 319, 321, 566
BseYI	CCCAGC	1 cut(s)	526
BsgI	GTGCAG	1 cut(s)	540
BshFI	GGCC	1 cut(s)	405
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	492
BslFI	GGGAC	2 cut(s)	278, 656
BsmAI	GTCTC	2 cut(s)	314, 489
BsmFI	GGGAC	2 cut(s)	278, 656
BsnI	GGCC	1 cut(s)	405
Bso31I	GGTCTC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	57
Bsp13I	TCCGGA	1 cut(s)	491
Bsp143I	GATC	4 cut(s)	290, 326, 593, 625
BspACI	CCGC	2 cut(s)	350, 597
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	3 cut(s)	174, 559, 673
BspEI	TCCGGA	1 cut(s)	491
BspLI	GGNNCC	4 cut(s)	76, 177, 376, 595
BspMAI	CTGCAG	1 cut(s)	246
BspOI	GCTAGC	1 cut(s)	480
BspPI	GGATC	2 cut(s)	588, 601
BspTNI	GGTCTC	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	2 cut(s)	171, 228
BssMI	GATC	4 cut(s)	290, 326, 593, 625
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	230
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	478, 601
BstDEI	CTNAG	3 cut(s)	182, 567, 660
BstF5I	GGATG	1 cut(s)	655
BstKTI	GATC	4 cut(s)	293, 329, 596, 628
BstMAI	GTCTC	2 cut(s)	314, 489
BstMBI	GATC	4 cut(s)	290, 326, 593, 625
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNI	CCWGG	1 cut(s)	230
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	2 cut(s)	242, 614
BstV1I	GCAGC	5 cut(s)	37, 318, 319, 321, 566
BstX2I	RGATCY	1 cut(s)	593
BstXI	CCANNNNNNTGG	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	1 cut(s)	405
BtgZI	GCGATG	1 cut(s)	618
BtsCI	GGATG	1 cut(s)	655
Cac8I	GCNNGC	2 cut(s)	478, 601
Csp6I	GTAC	2 cut(s)	399, 470
CviAII	CATG	4 cut(s)	121, 365, 473, 620
CviJI	RGCY	6 cut(s)	28, 332, 405, 480, 526, 574
CviKI_1	RGCY	6 cut(s)	28, 332, 405, 480, 526, 574
CviQI	GTAC	2 cut(s)	399, 470
DdeI	CTNAG	3 cut(s)	182, 567, 660
DpnI	GATC	4 cut(s)	292, 328, 595, 627
DpnII	GATC	4 cut(s)	290, 326, 593, 625
Eco130I	CCWWGG	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	314
Eco32I	GATATC	1 cut(s)	433
Eco88I	CYCGRG	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	228
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	4 cut(s)	124, 368, 476, 623
FaqI	GGGAC	2 cut(s)	278, 656
FatI	CATG	4 cut(s)	120, 364, 472, 619
FauNDI	CATATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	625
Fnu4HI	GCNGC	6 cut(s)	26, 307, 310, 333, 350, 555
FokI	GGATG	1 cut(s)	642
Fsp4HI	GCNGC	6 cut(s)	26, 307, 310, 333, 350, 555
FspBI	CTAG	3 cut(s)	383, 477, 512
GluI	GCNGC	6 cut(s)	26, 307, 310, 333, 350, 555
GsaI	CCCAGC	1 cut(s)	530
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	1 cut(s)	492
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	4 cut(s)	124, 368, 476, 623
HinfI	GANTC	4 cut(s)	184, 233, 238, 497
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	1 cut(s)	500
Hpy188I	TCNGA	3 cut(s)	183, 663, 677
Hpy188III	TCNNGA	3 cut(s)	72, 492, 629
Hpy99I	CGWCG	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	4 cut(s)	25, 244, 306, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	3 cut(s)	182, 567, 660
HpySE526I	ACGT	1 cut(s)	33
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	124, 368, 476, 623
Kpn2I	TCCGGA	1 cut(s)	491
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	4 cut(s)	290, 326, 593, 625
LpnPI	CCDG	9 cut(s)	57, 94, 204, 215, 242, 337, 387, 505, 512
Lsp1109I	GCAGC	5 cut(s)	37, 318, 319, 321, 566
LweI	GCATC	1 cut(s)	528
MaeI	CTAG	3 cut(s)	383, 477, 512
MaeII	ACGT	1 cut(s)	33
MalI	GATC	4 cut(s)	292, 328, 595, 627
MboI	GATC	4 cut(s)	290, 326, 593, 625
MboII	GAAGA	3 cut(s)	115, 415, 620
MflI	RGATCY	1 cut(s)	593
MluCI	AATT	7 cut(s)	6, 19, 166, 210, 299, 354, 582
MlyI	GAGTC	3 cut(s)	193, 242, 491
MnlI	CCTC	8 cut(s)	84, 140, 152, 164, 189, 199, 379, 669
MroI	TCCGGA	1 cut(s)	491
MseI	TTAA	2 cut(s)	18, 213
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	22
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	4 cut(s)	290, 326, 593, 625
NheI	GCTAGC	1 cut(s)	476
NlaIII	CATG	4 cut(s)	124, 368, 476, 623
NlaIV	GGNNCC	4 cut(s)	76, 177, 376, 595
NspI	RCATGY	1 cut(s)	476
PaeR7I	CTCGAG	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	6 cut(s)	27, 308, 311, 334, 351, 556
PleI	GAGTC	3 cut(s)	192, 241, 491
PpsI	GAGTC	3 cut(s)	192, 241, 491
Psp6I	CCWGG	1 cut(s)	228
PspFI	CCCAGC	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	4 cut(s)	76, 177, 376, 595
PspXI	VCTCGAGB	1 cut(s)	57
PstI	CTGCAG	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	593
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	2 cut(s)	400, 471
RsaNI	GTAC	2 cut(s)	399, 470
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	18, 213
SatI	GCNGC	6 cut(s)	26, 307, 310, 333, 350, 555
Sau3AI	GATC	4 cut(s)	290, 326, 593, 625
ScaI	AGTACT	1 cut(s)	400
SchI	GAGTC	3 cut(s)	193, 242, 491
ScrFI	CCNGG	1 cut(s)	230
SfaNI	GCATC	1 cut(s)	528
SfcI	CTRYAG	2 cut(s)	242, 614
Sfr274I	CTCGAG	1 cut(s)	57
SlaI	CTCGAG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	7 cut(s)	6, 19, 166, 210, 299, 354, 582
SsiI	CCGC	2 cut(s)	350, 597
SspMI	CTAG	3 cut(s)	383, 477, 512
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	171
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	3 cut(s)	58, 236, 536
TasI	AATT	7 cut(s)	6, 19, 166, 210, 299, 354, 582
TatI	WGTACW	2 cut(s)	398, 469
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	2 cut(s)	18, 213
Tru9I	TTAA	2 cut(s)	18, 213
TseI	GCWGC	5 cut(s)	25, 306, 309, 332, 554
TspDTI	ATGAA	4 cut(s)	137, 312, 409, 621
TspGWI	ACGGA	2 cut(s)	103, 506
XapI	RAATTY	3 cut(s)	6, 166, 354
XceI	RCATGY	1 cut(s)	476
XhoI	CTCGAG	1 cut(s)	57
XspI	CTAG	3 cut(s)	383, 477, 512
ZraI	GACGTC	1 cut(s)	34
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.