Rh2BG330100

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0010583
Physical Location & Seq
Forward (+)
43332724 .. 43334601
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG330100.1

Sequence Viewer

Length: 537 bp
ATGGGAATTTTGGTGCTTAATTTGCAGCCCGACGTCAAACAAGTAATGGATAATACTCGAGCAACAACATCAGGAACCAAAGTAGAACGGAGGGTTATTGAGAAGAACAGGAGAAACCACATGAAAATCCTCTACTCCCACCTCAACTCTCTCCTCCCAAACCAAAATTCCAAGGAACCTCTGAGTCTGCCTGAACAAATAGATGAGGCAATTAACTATATCAAAACCCTGGAGTCGAATCTGCAGAAATCCAAGCAGAAAAGGGACAACCTAAAGTTTGGTAGGAAAAGATCATATGAATTATGCAGCAGCACCTTTGAGACCAGATCAGCTGCCCCCACAAAATCGCCGCAAATTCAAATCCATGAGAATGGTTCCACCCTAGAGGTTGTTTTGAGTACTGGCCTACACAATCAGTTCATCTTCTACGATATCATTCGCATACTTGACCAAGAACAAGCAGATGTAGTACATGCTAGCTTTTCAACTTCCGGAGACTCCATACTTCACCTAGTCCGTGCAGAGGTACGTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

178

Amino Acids

20.3

Weight (kDa)

9.24

Isoelectric Point (pI)

53.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 29 - 78 9.7e-09 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 36
AccIII TCCGGA 1 cut(s) 491
AciI CCGC 1 cut(s) 350
AcsI RAATTY 3 cut(s) 6, 166, 354
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 3 cut(s) 400, 471, 528
AfiI CCNNNNNNNGG 1 cut(s) 523
AflIII ACRYGT 1 cut(s) 529
AgsI TTSAA 2 cut(s) 359, 486
AjnI CCWGG 1 cut(s) 228
AjuI GAANNNNNNNTTGG 2 cut(s) 151, 183
AluBI AGCT 2 cut(s) 332, 480
AluI AGCT 2 cut(s) 332, 480
Alw26I GTCTC 2 cut(s) 314, 489
Ama87I CYCGRG 1 cut(s) 57
Aor13HI TCCGGA 1 cut(s) 491
AoxI GGCC 1 cut(s) 403
ApeKI GCWGC 4 cut(s) 25, 306, 309, 332
ApoI RAATTY 3 cut(s) 6, 166, 354
AsuHPI GGTGA 1 cut(s) 500
AsuNHI GCTAGC 1 cut(s) 476
AvaI CYCGRG 1 cut(s) 57
BbvI GCAGC 4 cut(s) 37, 318, 319, 321
BciT130I CCWGG 1 cut(s) 230
BcoDI GTCTC 2 cut(s) 314, 489
BfaI CTAG 4 cut(s) 383, 477, 512, 535
BfmI CTRYAG 1 cut(s) 242
BisI GCNGC 5 cut(s) 26, 307, 310, 333, 350
BlsI GCNGC 5 cut(s) 27, 308, 311, 334, 351
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 230
BmeT110I CYCGRG 1 cut(s) 57
BmiI GGNNCC 3 cut(s) 76, 177, 376
BmrFI CCNGG 1 cut(s) 230
BmtI GCTAGC 1 cut(s) 480
BpmI CTGGAG 1 cut(s) 251
BsaAI YACGTR 1 cut(s) 530
BsaHI GRCGYC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 171, 228
BsaWI WCCGGW 1 cut(s) 491
Bsc4I CCNNNNNNNGG 1 cut(s) 523
Bse1I ACTGG 1 cut(s) 406
BseAI TCCGGA 1 cut(s) 491
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 171, 228
BseLI CCNNNNNNNGG 1 cut(s) 523
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 406
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 4 cut(s) 37, 318, 319, 321
BshFI GGCC 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 492
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 523
BsmAI GTCTC 2 cut(s) 314, 489
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 1 cut(s) 405
Bso31I GGTCTC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 57
Bsp13I TCCGGA 1 cut(s) 491
Bsp143I GATC 2 cut(s) 290, 326
BspACI CCGC 1 cut(s) 350
BspANI GGCC 1 cut(s) 405
BspCNI CTCAG 1 cut(s) 174
BspEI TCCGGA 1 cut(s) 491
BspLI GGNNCC 3 cut(s) 76, 177, 376
BspMAI CTGCAG 1 cut(s) 246
BspOI GCTAGC 1 cut(s) 480
BspTNI GGTCTC 1 cut(s) 314
BsrI ACTGG 1 cut(s) 406
BssECI CCNNGG 2 cut(s) 171, 228
BssMI GATC 2 cut(s) 290, 326
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 230
BstACI GRCGYC 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 530
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 1 cut(s) 182
BstKTI GATC 2 cut(s) 293, 329
BstMAI GTCTC 2 cut(s) 314, 489
BstMBI GATC 2 cut(s) 290, 326
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstNI CCWGG 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 476
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 1 cut(s) 242
BstV1I GCAGC 4 cut(s) 37, 318, 319, 321
BstXI CCANNNNNNTGG 1 cut(s) 371
BsuRI GGCC 1 cut(s) 405
Cac8I GCNNGC 1 cut(s) 478
Csp6I GTAC 3 cut(s) 399, 470, 527
CviAII CATG 3 cut(s) 121, 365, 473
CviJI RGCY 4 cut(s) 28, 332, 405, 480
CviKI_1 RGCY 4 cut(s) 28, 332, 405, 480
CviQI GTAC 3 cut(s) 399, 470, 527
DdeI CTNAG 1 cut(s) 182
DpnI GATC 2 cut(s) 292, 328
DpnII GATC 2 cut(s) 290, 326
Eco130I CCWWGG 1 cut(s) 171
Eco31I GGTCTC 1 cut(s) 314
Eco32I GATATC 1 cut(s) 433
Eco88I CYCGRG 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 228
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 3 cut(s) 124, 368, 476
FaiI YATR 9 cut(s) 122, 219, 295, 297, 304, 366, 443, 474, 503
FaqI GGGAC 1 cut(s) 278
FatI CATG 3 cut(s) 120, 364, 472
FauNDI CATATG 1 cut(s) 295
Fnu4HI GCNGC 5 cut(s) 26, 307, 310, 333, 350
Fsp4HI GCNGC 5 cut(s) 26, 307, 310, 333, 350
FspBI CTAG 4 cut(s) 383, 477, 512, 535
GluI GCNGC 5 cut(s) 26, 307, 310, 333, 350
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 1 cut(s) 405
HapII CCGG 1 cut(s) 492
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 3 cut(s) 124, 368, 476
HinfI GANTC 4 cut(s) 184, 233, 238, 497
HpaII CCGG 1 cut(s) 492
HphI GGTGA 1 cut(s) 500
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 2 cut(s) 72, 492
Hpy99I CGWCG 1 cut(s) 35
HpyCH4IV ACGT 2 cut(s) 33, 529
HpyCH4V TGCA 4 cut(s) 25, 244, 306, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 2 cut(s) 33, 529
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 3 cut(s) 124, 368, 476
Kpn2I TCCGGA 1 cut(s) 491
Kzo9I GATC 2 cut(s) 290, 326
LpnPI CCDG 8 cut(s) 57, 94, 204, 215, 242, 337, 387, 505
Lsp1109I GCAGC 4 cut(s) 37, 318, 319, 321
MaeI CTAG 4 cut(s) 383, 477, 512, 535
MaeII ACGT 2 cut(s) 33, 529
MalI GATC 2 cut(s) 292, 328
MboI GATC 2 cut(s) 290, 326
MboII GAAGA 2 cut(s) 115, 415
MluCI AATT 6 cut(s) 6, 19, 166, 210, 299, 354
MlyI GAGTC 3 cut(s) 193, 242, 491
MnlI CCTC 8 cut(s) 84, 140, 152, 164, 189, 199, 379, 517
MroI TCCGGA 1 cut(s) 491
MseI TTAA 2 cut(s) 18, 213
MslI CAYNNNNRTG 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 1 cut(s) 492
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 22
NdeI CATATG 1 cut(s) 295
NdeII GATC 2 cut(s) 290, 326
NheI GCTAGC 1 cut(s) 476
NlaIII CATG 3 cut(s) 124, 368, 476
NlaIV GGNNCC 3 cut(s) 76, 177, 376
NspI RCATGY 1 cut(s) 476
PaeR7I CTCGAG 1 cut(s) 57
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 5 cut(s) 27, 308, 311, 334, 351
PleI GAGTC 3 cut(s) 192, 241, 491
PpsI GAGTC 3 cut(s) 192, 241, 491
Ppu21I YACGTR 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 3 cut(s) 76, 177, 376
PspXI VCTCGAGB 1 cut(s) 57
PstI CTGCAG 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 3 cut(s) 400, 471, 528
RsaNI GTAC 3 cut(s) 399, 470, 527
RseI CAYNNNNRTG 1 cut(s) 369
SaqAI TTAA 2 cut(s) 18, 213
SatI GCNGC 5 cut(s) 26, 307, 310, 333, 350
Sau3AI GATC 2 cut(s) 290, 326
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 3 cut(s) 193, 242, 491
ScrFI CCNGG 1 cut(s) 230
SfcI CTRYAG 1 cut(s) 242
Sfr274I CTCGAG 1 cut(s) 57
SlaI CTCGAG 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 6 cut(s) 6, 19, 166, 210, 299, 354
SsiI CCGC 1 cut(s) 350
SspMI CTAG 4 cut(s) 383, 477, 512, 535
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 171
TaiI ACGT 2 cut(s) 36, 532
TaqI TCGA 2 cut(s) 58, 236
TasI AATT 6 cut(s) 6, 19, 166, 210, 299, 354
TatI WGTACW 2 cut(s) 398, 469
TauI GCSGC 1 cut(s) 352
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 2 cut(s) 18, 213
Tru9I TTAA 2 cut(s) 18, 213
TseI GCWGC 4 cut(s) 25, 306, 309, 332
TspDTI ATGAA 3 cut(s) 137, 312, 409
TspGWI ACGGA 2 cut(s) 103, 506
XapI RAATTY 3 cut(s) 6, 166, 354
XceI RCATGY 1 cut(s) 476
XhoI CTCGAG 1 cut(s) 57
XspI CTAG 4 cut(s) 383, 477, 512, 535
ZraI GACGTC 1 cut(s) 34
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.