Rh2DG349400

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010583
Physical Location & Seq
Forward (+)
48917957 .. 48919887
1931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG349400.1

Sequence Viewer

Length: 762 bp
ATGACGATCTCATATAGCGTAGCTCATCCATTAATCACTAAAGGCTTGTGCTTCATCATCATCATCATCATCATCATCATCATCAAGAAAATTCAACCCTCGCCCCTACTGCCCGACGTCAAACAAGTAATGGATAATACTCGAGCAACAACATCAGGAACCAAAGTAGAACGGAGGGTTATTGAGAAGAACAGGAGAAACCACATGAAAATCCTCTACTCCCACCTCAACTCTCTCCTCCCAAACCAAAATTCCAAGGAACCTCTGAGTCTGCCTGAACAAATAGATGAGGCAATTAACTACATCAAAACCCTGGAGTCGAATCTGCAGAAATCCAAGCAGAAAAGGGACAGCCTAAAGTTTGGTAGGAAAAGATCATATGAATTATGCAGCAGCACCTATGAGACCAGATCAGCTGCCCCCACAAAATCGCCGCAAATTCAAATCCATGAGAGTGGTTCCACCCTAGAGGTTGTTTTGAGTACTGGCCTACACAATCAGTTCATCTTCTACGATATCATTCGCATACTTGACCAAGAACAAGCAGATGTAGTACATGCTAGCTTTTCAACTTCCGGAGACTCTATACTTCACCTAGTCCGTGCAGAGCTGGGCAAGTCGATGCTTGATTTTGGGGCAGCAAGAATAACTGAGAAGCTGAAAAGAATTGTCAATGGATCCGCAAGCGATGAAGAACTACAGCATGATGATCAAGACTACTTTTGGGACTTCCAAATCCATCCTCAGATGTGGGATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

253

Amino Acids

28.94

Weight (kDa)

7.8

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 57 - 106 1.8e-08 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 575
AciI CCGC 2 cut(s) 434, 681
AclWI GGATC 2 cut(s) 672, 685
AcsI RAATTY 3 cut(s) 90, 250, 438
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 2 cut(s) 484, 555
AgsI TTSAA 3 cut(s) 95, 443, 570
AjnI CCWGG 1 cut(s) 312
AjuI GAANNNNNNNTTGG 2 cut(s) 235, 267
AluBI AGCT 5 cut(s) 23, 416, 564, 610, 658
AluI AGCT 5 cut(s) 23, 416, 564, 610, 658
Alw26I GTCTC 2 cut(s) 398, 573
AlwI GGATC 2 cut(s) 672, 685
Ama87I CYCGRG 1 cut(s) 141
Aor13HI TCCGGA 1 cut(s) 575
AoxI GGCC 1 cut(s) 487
ApeKI GCWGC 4 cut(s) 390, 393, 416, 638
ApoI RAATTY 3 cut(s) 90, 250, 438
AseI ATTAAT 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 584
AsuNHI GCTAGC 1 cut(s) 560
AvaI CYCGRG 1 cut(s) 141
BamHI GGATCC 1 cut(s) 677
BbvI GCAGC 4 cut(s) 402, 403, 405, 650
BccI CCATC 1 cut(s) 747
BciT130I CCWGG 1 cut(s) 314
BclI TGATCA 1 cut(s) 709
BcoDI GTCTC 2 cut(s) 398, 573
BfaI CTAG 3 cut(s) 467, 561, 596
BfmI CTRYAG 2 cut(s) 326, 698
BisI GCNGC 5 cut(s) 391, 394, 417, 434, 639
BlsI GCNGC 5 cut(s) 392, 395, 418, 435, 640
BmcAI AGTACT 1 cut(s) 484
Bme1390I CCNGG 1 cut(s) 314
BmeT110I CYCGRG 1 cut(s) 141
BmiI GGNNCC 4 cut(s) 160, 261, 460, 679
BmrFI CCNGG 1 cut(s) 314
BmsI GCATC 1 cut(s) 612
BmtI GCTAGC 1 cut(s) 564
BpmI CTGGAG 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 2 cut(s) 255, 312
BsaWI WCCGGW 1 cut(s) 575
Bse1I ACTGG 1 cut(s) 490
BseAI TCCGGA 1 cut(s) 575
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 255, 312
BseGI GGATG 2 cut(s) 25, 739
BseMII CTCAG 3 cut(s) 257, 642, 758
BseNI ACTGG 1 cut(s) 490
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 4 cut(s) 402, 403, 405, 650
BseYI CCCAGC 1 cut(s) 610
BsgI GTGCAG 1 cut(s) 624
BshFI GGCC 1 cut(s) 489
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 1 cut(s) 576
BslFI GGGAC 2 cut(s) 362, 740
BsmAI GTCTC 2 cut(s) 398, 573
BsmFI GGGAC 2 cut(s) 362, 740
BsnI GGCC 1 cut(s) 489
Bso31I GGTCTC 1 cut(s) 398
BsoBI CYCGRG 1 cut(s) 141
Bsp13I TCCGGA 1 cut(s) 575
Bsp143I GATC 5 cut(s) 6, 374, 410, 677, 709
BspACI CCGC 2 cut(s) 434, 681
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 3 cut(s) 258, 643, 757
BspEI TCCGGA 1 cut(s) 575
BspLI GGNNCC 4 cut(s) 160, 261, 460, 679
BspMAI CTGCAG 1 cut(s) 330
BspOI GCTAGC 1 cut(s) 564
BspPI GGATC 2 cut(s) 672, 685
BspTNI GGTCTC 1 cut(s) 398
BsrI ACTGG 1 cut(s) 490
BssECI CCNNGG 2 cut(s) 255, 312
BssMI GATC 5 cut(s) 6, 374, 410, 677, 709
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 314
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 562, 685
BstDEI CTNAG 3 cut(s) 266, 651, 744
BstF5I GGATG 2 cut(s) 25, 739
BstKTI GATC 5 cut(s) 9, 377, 413, 680, 712
BstMAI GTCTC 2 cut(s) 398, 573
BstMBI GATC 5 cut(s) 6, 374, 410, 677, 709
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNI CCWGG 1 cut(s) 314
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 1 cut(s) 312
BstSFI CTRYAG 2 cut(s) 326, 698
BstV1I GCAGC 4 cut(s) 402, 403, 405, 650
BstX2I RGATCY 1 cut(s) 677
BstXI CCANNNNNNTGG 1 cut(s) 455
BstYI RGATCY 1 cut(s) 677
BsuRI GGCC 1 cut(s) 489
BtgZI GCGATG 1 cut(s) 702
BtsCI GGATG 2 cut(s) 25, 739
Cac8I GCNNGC 2 cut(s) 562, 685
Csp6I GTAC 2 cut(s) 483, 554
CviAII CATG 4 cut(s) 205, 449, 557, 704
CviJI RGCY 8 cut(s) 23, 45, 354, 416, 489, 564, 610, 658
CviKI_1 RGCY 8 cut(s) 23, 45, 354, 416, 489, 564, 610, 658
CviQI GTAC 2 cut(s) 483, 554
DdeI CTNAG 3 cut(s) 266, 651, 744
DpnI GATC 5 cut(s) 8, 376, 412, 679, 711
DpnII GATC 5 cut(s) 6, 374, 410, 677, 709
Eco130I CCWWGG 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 398
Eco32I GATATC 1 cut(s) 517
Eco88I CYCGRG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 312
EcoRV GATATC 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 4 cut(s) 208, 452, 560, 707
FaqI GGGAC 2 cut(s) 362, 740
FatI CATG 4 cut(s) 204, 448, 556, 703
FauNDI CATATG 1 cut(s) 379
FbaI TGATCA 1 cut(s) 709
Fnu4HI GCNGC 5 cut(s) 391, 394, 417, 434, 639
FokI GGATG 2 cut(s) 12, 726
Fsp4HI GCNGC 5 cut(s) 391, 394, 417, 434, 639
FspBI CTAG 3 cut(s) 467, 561, 596
GluI GCNGC 5 cut(s) 391, 394, 417, 434, 639
GsaI CCCAGC 1 cut(s) 614
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 1 cut(s) 489
HapII CCGG 1 cut(s) 576
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 4 cut(s) 208, 452, 560, 707
HinfI GANTC 4 cut(s) 268, 317, 322, 581
HpaII CCGG 1 cut(s) 576
HphI GGTGA 1 cut(s) 584
Hpy188I TCNGA 3 cut(s) 267, 747, 761
Hpy188III TCNNGA 4 cut(s) 85, 156, 576, 713
Hpy99I CGWCG 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 328, 390, 605
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 3 cut(s) 266, 651, 744
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 4 cut(s) 208, 452, 560, 707
Kpn2I TCCGGA 1 cut(s) 575
Ksp22I TGATCA 1 cut(s) 709
Kzo9I GATC 5 cut(s) 6, 374, 410, 677, 709
LpnPI CCDG 9 cut(s) 141, 178, 288, 299, 326, 421, 471, 589, 596
Lsp1109I GCAGC 4 cut(s) 402, 403, 405, 650
LweI GCATC 1 cut(s) 612
MaeI CTAG 3 cut(s) 467, 561, 596
MaeII ACGT 1 cut(s) 117
MalI GATC 5 cut(s) 8, 376, 412, 679, 711
MboI GATC 5 cut(s) 6, 374, 410, 677, 709
MboII GAAGA 3 cut(s) 199, 499, 704
MflI RGATCY 1 cut(s) 677
MluCI AATT 6 cut(s) 90, 250, 294, 383, 438, 666
MlyI GAGTC 3 cut(s) 277, 326, 575
MnlI CCTC 9 cut(s) 109, 168, 224, 236, 248, 273, 283, 463, 753
MroI TCCGGA 1 cut(s) 575
MseI TTAA 2 cut(s) 32, 297
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 1 cut(s) 576
MspR9I CCNGG 1 cut(s) 314
MvaI CCWGG 1 cut(s) 314
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeI CATATG 1 cut(s) 379
NdeII GATC 5 cut(s) 6, 374, 410, 677, 709
NheI GCTAGC 1 cut(s) 560
NlaIII CATG 4 cut(s) 208, 452, 560, 707
NlaIV GGNNCC 4 cut(s) 160, 261, 460, 679
NspI RCATGY 1 cut(s) 560
PaeR7I CTCGAG 1 cut(s) 141
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 5 cut(s) 392, 395, 418, 435, 640
PleI GAGTC 3 cut(s) 276, 325, 575
PpsI GAGTC 3 cut(s) 276, 325, 575
PshBI ATTAAT 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 312
PspFI CCCAGC 1 cut(s) 610
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 4 cut(s) 160, 261, 460, 679
PspXI VCTCGAGB 1 cut(s) 141
PstI CTGCAG 1 cut(s) 330
PsuI RGATCY 1 cut(s) 677
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 2 cut(s) 484, 555
RsaNI GTAC 2 cut(s) 483, 554
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 2 cut(s) 32, 297
SatI GCNGC 5 cut(s) 391, 394, 417, 434, 639
Sau3AI GATC 5 cut(s) 6, 374, 410, 677, 709
ScaI AGTACT 1 cut(s) 484
SchI GAGTC 3 cut(s) 277, 326, 575
ScrFI CCNGG 1 cut(s) 314
SfaNI GCATC 1 cut(s) 612
SfcI CTRYAG 2 cut(s) 326, 698
Sfr274I CTCGAG 1 cut(s) 141
SlaI CTCGAG 1 cut(s) 141
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
Sse9I AATT 6 cut(s) 90, 250, 294, 383, 438, 666
SsiI CCGC 2 cut(s) 434, 681
SspMI CTAG 3 cut(s) 467, 561, 596
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 1 cut(s) 255
TaiI ACGT 1 cut(s) 120
TaqI TCGA 3 cut(s) 142, 320, 620
TasI AATT 6 cut(s) 90, 250, 294, 383, 438, 666
TatI WGTACW 2 cut(s) 482, 553
TauI GCSGC 1 cut(s) 436
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 2 cut(s) 32, 297
Tru9I TTAA 2 cut(s) 32, 297
TseI GCWGC 4 cut(s) 390, 393, 416, 638
TspDTI ATGAA 5 cut(s) 43, 221, 396, 493, 705
TspGWI ACGGA 2 cut(s) 187, 590
VspI ATTAAT 1 cut(s) 32
XapI RAATTY 3 cut(s) 90, 250, 438
XceI RCATGY 1 cut(s) 560
XhoI CTCGAG 1 cut(s) 141
XspI CTAG 3 cut(s) 467, 561, 596
ZraI GACGTC 1 cut(s) 118
ZrmI AGTACT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.