Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000007.1

Orthogroup ID

OG0010583

Physical Location & Seq

Genomic Coordinates Forward (+)

97233 .. 98426

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000007.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgacgatctcatatagcgtagctcatccattaatcactacaggcttgtgcttcatcatcatcatcatcatcaagaaaattcaaccctcgcccctactgcccgacgtcaaacaagtaatggataatactcgagcaacaacatcaggaaccaaagtagaacggagggttattgagaagaacaggagaaaccacatgaaaatcctctactcccacctcaactctctcctcccaaaccaaaattccaaggaacctctgagtctgcctgaacaaatagatgaggcaattaactacatcaaaaccctggagtcgaatctgcagaaatccaagcagaaaagggacaacctaaagtttggtaggaaaagatcatatgaattatgcagcagcacctttgagaccagatcagctgcccccacaaaatcgccgcaaattcaaatccatgagaatggttccaccctagaggttgttttgagtactggcctacacaatcagttcatcttctacgatatcattcgcatacttgaccaagaacaagcagatgtagtacatgctagcttttcaacttccggagactctatacttcacctagtccgtgcagagctgggcaagtcgatgcttgattttggggcagcaagaataactgagaagctgaaaagaattgtcaatggatccgcaagcgatgaagaactacagcatgatgatcaagactacttttgggacttccaaatccatcctcagatgtgggatttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

249

Amino Acids

28.5

Weight (kDa)

7.13

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g26360 FvH4_6g26360
malus_domestica	MD09G1233000.v1.1 MD17G1237900.v1.1 MD17G1238500.v1.1 MD17G1238600.v1.1
prunus_persica	Prupe.3G131500_v2.0.a1
pyrus_communis	pycom09g16340 pycom17g24260
rosa_chinensis	RchiOBHm_Chr2g0126861
rosa_laevigata	RLG00000018923
rosa_multiflora	Rmu_sc0000007.1_g000017
rosa_roxburghii	Rroxscaffold_2G00116960
rosa_rugosa	Rorug02G0264800 Rorug02G0264900 Rorug02G0265000
rosa_samantha	Rh2AG322000 Rh2BG330100 Rh2CG310000 Rh2DG349400
rosa_wichuraiana	Rw2G026100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	108
AccIII	TCCGGA	1 cut(s)	563
AciI	CCGC	2 cut(s)	422, 669
AclWI	GGATC	2 cut(s)	660, 673
AcsI	RAATTY	3 cut(s)	78, 238, 426
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	2 cut(s)	472, 543
AgsI	TTSAA	3 cut(s)	83, 431, 558
AjnI	CCWGG	1 cut(s)	300
AjuI	GAANNNNNNNTTGG	2 cut(s)	223, 255
AluBI	AGCT	5 cut(s)	23, 404, 552, 598, 646
AluI	AGCT	5 cut(s)	23, 404, 552, 598, 646
Alw26I	GTCTC	2 cut(s)	386, 561
AlwI	GGATC	2 cut(s)	660, 673
Ama87I	CYCGRG	1 cut(s)	129
Aor13HI	TCCGGA	1 cut(s)	563
AoxI	GGCC	1 cut(s)	475
ApeKI	GCWGC	4 cut(s)	378, 381, 404, 626
ApoI	RAATTY	3 cut(s)	78, 238, 426
AseI	ATTAAT	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	572
AsuNHI	GCTAGC	1 cut(s)	548
AvaI	CYCGRG	1 cut(s)	129
BamHI	GGATCC	1 cut(s)	665
BbvI	GCAGC	4 cut(s)	390, 391, 393, 638
BccI	CCATC	1 cut(s)	735
BciT130I	CCWGG	1 cut(s)	302
BclI	TGATCA	1 cut(s)	697
BcoDI	GTCTC	2 cut(s)	386, 561
BfaI	CTAG	3 cut(s)	455, 549, 584
BfmI	CTRYAG	3 cut(s)	39, 314, 686
BisI	GCNGC	5 cut(s)	379, 382, 405, 422, 627
BlsI	GCNGC	5 cut(s)	380, 383, 406, 423, 628
BmcAI	AGTACT	1 cut(s)	472
Bme1390I	CCNGG	1 cut(s)	302
BmeT110I	CYCGRG	1 cut(s)	129
BmiI	GGNNCC	4 cut(s)	148, 249, 448, 667
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	1 cut(s)	600
BmtI	GCTAGC	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	386
BsaJI	CCNNGG	2 cut(s)	243, 300
BsaWI	WCCGGW	1 cut(s)	563
Bse1I	ACTGG	1 cut(s)	478
BseAI	TCCGGA	1 cut(s)	563
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	243, 300
BseGI	GGATG	2 cut(s)	25, 727
BseMII	CTCAG	3 cut(s)	245, 630, 746
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	4 cut(s)	390, 391, 393, 638
BseYI	CCCAGC	1 cut(s)	598
BsgI	GTGCAG	1 cut(s)	612
BshFI	GGCC	1 cut(s)	477
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	564
BslFI	GGGAC	2 cut(s)	350, 728
BsmAI	GTCTC	2 cut(s)	386, 561
BsmFI	GGGAC	2 cut(s)	350, 728
BsnI	GGCC	1 cut(s)	477
Bso31I	GGTCTC	1 cut(s)	386
BsoBI	CYCGRG	1 cut(s)	129
Bsp13I	TCCGGA	1 cut(s)	563
Bsp143I	GATC	5 cut(s)	6, 362, 398, 665, 697
BspACI	CCGC	2 cut(s)	422, 669
BspANI	GGCC	1 cut(s)	477
BspCNI	CTCAG	3 cut(s)	246, 631, 745
BspEI	TCCGGA	1 cut(s)	563
BspLI	GGNNCC	4 cut(s)	148, 249, 448, 667
BspMAI	CTGCAG	1 cut(s)	318
BspOI	GCTAGC	1 cut(s)	552
BspPI	GGATC	2 cut(s)	660, 673
BspTNI	GGTCTC	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	478
BssECI	CCNNGG	2 cut(s)	243, 300
BssMI	GATC	5 cut(s)	6, 362, 398, 665, 697
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	302
BstACI	GRCGYC	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	550, 673
BstDEI	CTNAG	3 cut(s)	254, 639, 732
BstF5I	GGATG	2 cut(s)	25, 727
BstKTI	GATC	5 cut(s)	9, 365, 401, 668, 700
BstMAI	GTCTC	2 cut(s)	386, 561
BstMBI	GATC	5 cut(s)	6, 362, 398, 665, 697
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNI	CCWGG	1 cut(s)	302
BstNSI	RCATGY	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	300
BstSFI	CTRYAG	3 cut(s)	39, 314, 686
BstV1I	GCAGC	4 cut(s)	390, 391, 393, 638
BstX2I	RGATCY	1 cut(s)	665
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	665
BsuRI	GGCC	1 cut(s)	477
BtgZI	GCGATG	1 cut(s)	690
BtsCI	GGATG	2 cut(s)	25, 727
Cac8I	GCNNGC	2 cut(s)	550, 673
Csp6I	GTAC	2 cut(s)	471, 542
CviAII	CATG	4 cut(s)	193, 437, 545, 692
CviJI	RGCY	7 cut(s)	23, 45, 404, 477, 552, 598, 646
CviKI_1	RGCY	7 cut(s)	23, 45, 404, 477, 552, 598, 646
CviQI	GTAC	2 cut(s)	471, 542
DdeI	CTNAG	3 cut(s)	254, 639, 732
DpnI	GATC	5 cut(s)	8, 364, 400, 667, 699
DpnII	GATC	5 cut(s)	6, 362, 398, 665, 697
Eco130I	CCWWGG	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	386
Eco32I	GATATC	1 cut(s)	505
Eco88I	CYCGRG	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	300
EcoRV	GATATC	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	4 cut(s)	196, 440, 548, 695
FaqI	GGGAC	2 cut(s)	350, 728
FatI	CATG	4 cut(s)	192, 436, 544, 691
FauNDI	CATATG	1 cut(s)	367
FbaI	TGATCA	1 cut(s)	697
Fnu4HI	GCNGC	5 cut(s)	379, 382, 405, 422, 627
FokI	GGATG	2 cut(s)	12, 714
Fsp4HI	GCNGC	5 cut(s)	379, 382, 405, 422, 627
FspBI	CTAG	3 cut(s)	455, 549, 584
GluI	GCNGC	5 cut(s)	379, 382, 405, 422, 627
GsaI	CCCAGC	1 cut(s)	602
GsuI	CTGGAG	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	477
HapII	CCGG	1 cut(s)	564
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	4 cut(s)	196, 440, 548, 695
HinfI	GANTC	4 cut(s)	256, 305, 310, 569
HpaII	CCGG	1 cut(s)	564
HphI	GGTGA	1 cut(s)	572
Hpy188I	TCNGA	3 cut(s)	255, 735, 749
Hpy188III	TCNNGA	4 cut(s)	73, 144, 564, 701
Hpy99I	CGWCG	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	316, 378, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	3 cut(s)	254, 639, 732
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	4 cut(s)	196, 440, 548, 695
Kpn2I	TCCGGA	1 cut(s)	563
Ksp22I	TGATCA	1 cut(s)	697
Kzo9I	GATC	5 cut(s)	6, 362, 398, 665, 697
Lsp1109I	GCAGC	4 cut(s)	390, 391, 393, 638
LweI	GCATC	1 cut(s)	600
MaeI	CTAG	3 cut(s)	455, 549, 584
MaeII	ACGT	1 cut(s)	105
MalI	GATC	5 cut(s)	8, 364, 400, 667, 699
MboI	GATC	5 cut(s)	6, 362, 398, 665, 697
MboII	GAAGA	3 cut(s)	187, 487, 692
MflI	RGATCY	1 cut(s)	665
MluCI	AATT	6 cut(s)	78, 238, 282, 371, 426, 654
MlyI	GAGTC	3 cut(s)	265, 314, 563
MnlI	CCTC	9 cut(s)	97, 156, 212, 224, 236, 261, 271, 451, 741
MroI	TCCGGA	1 cut(s)	563
MseI	TTAA	2 cut(s)	32, 285
MslI	CAYNNNNRTG	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	1 cut(s)	564
MspR9I	CCNGG	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	5 cut(s)	6, 362, 398, 665, 697
NheI	GCTAGC	1 cut(s)	548
NlaIII	CATG	4 cut(s)	196, 440, 548, 695
NlaIV	GGNNCC	4 cut(s)	148, 249, 448, 667
NspI	RCATGY	1 cut(s)	548
PaeR7I	CTCGAG	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	5 cut(s)	380, 383, 406, 423, 628
PleI	GAGTC	3 cut(s)	264, 313, 563
PpsI	GAGTC	3 cut(s)	264, 313, 563
PshBI	ATTAAT	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	300
PspFI	CCCAGC	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	4 cut(s)	148, 249, 448, 667
PspXI	VCTCGAGB	1 cut(s)	129
PstI	CTGCAG	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	665
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	2 cut(s)	472, 543
RsaNI	GTAC	2 cut(s)	471, 542
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	2 cut(s)	32, 285
SatI	GCNGC	5 cut(s)	379, 382, 405, 422, 627
Sau3AI	GATC	5 cut(s)	6, 362, 398, 665, 697
ScaI	AGTACT	1 cut(s)	472
SchI	GAGTC	3 cut(s)	265, 314, 563
ScrFI	CCNGG	1 cut(s)	302
SfaNI	GCATC	1 cut(s)	600
SfcI	CTRYAG	3 cut(s)	39, 314, 686
Sfr274I	CTCGAG	1 cut(s)	129
SlaI	CTCGAG	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	6 cut(s)	78, 238, 282, 371, 426, 654
SsiI	CCGC	2 cut(s)	422, 669
SspMI	CTAG	3 cut(s)	455, 549, 584
StyD4I	CCNGG	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	3 cut(s)	130, 308, 608
TasI	AATT	6 cut(s)	78, 238, 282, 371, 426, 654
TatI	WGTACW	2 cut(s)	470, 541
TauI	GCSGC	1 cut(s)	424
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	2 cut(s)	32, 285
Tru9I	TTAA	2 cut(s)	32, 285
TseI	GCWGC	4 cut(s)	378, 381, 404, 626
TspDTI	ATGAA	5 cut(s)	43, 209, 384, 481, 693
TspGWI	ACGGA	2 cut(s)	175, 578
VspI	ATTAAT	1 cut(s)	32
XapI	RAATTY	3 cut(s)	78, 238, 426
XceI	RCATGY	1 cut(s)	548
XhoI	CTCGAG	1 cut(s)	129
XspI	CTAG	3 cut(s)	455, 549, 584
ZraI	GACGTC	1 cut(s)	106
ZrmI	AGTACT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.