Prupe.3G131500_v2.0.a1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0010583
Physical Location & Seq
Reverse (-)
13492784 .. 13493983
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G131500.1

Sequence Viewer

Length: 675 bp
ATGGGATCATTTGTTGCCAACTTGGAAGAGAGAGATCATCAAATTCAAATGGATCATAATCAAGGAAGTCAGTCTTCTTCAACCAAGGTAGAAAGGAGGGTGATAGAGAAGAACAGGAGAAACCAAATGAAAGTCCTCTACTCCAAGCTCAACTCTCTCCTCCCTCGCCAAAATTCCCAGGAGCCACTAAGTCTGCCTGATCAAATAGATGAAGCCATAAACTACATAAAAAGCCTAGAGACAAAGCTGCAGAAGTCCAAGGAGAAGAGGGATAGCTTAAAGGGAAAGAAAAAAAGATCACATACTGCATGCACAAACTTTGATAGCATGAGGTGCTCAAAACCACCGCAAATCGAAATCCATGAGATGGGGTCCACACTGGAGGTAGTATTGATCAGTGGGCTAGACAATCACCAGTTCATGTTCACCGAAATAATTCGTATAGTTCACGAAGAACAAGCAGATGTTGTGCATGCGAGCTTATCAACTTTGGGAGACTCAATATTTCACGTTATACGTGCAGAGGTAGGCAAGTCTATGATTGATTTTGGGGCTGCAAAAATAACTGAGAAATTGAGAAGATTCGTGAATGGATCCACCAGCGATGAAGAACTGCAGCGAGAGTACCTTTGGGACTTTGAAATCTATCCTGAGACATTATGGGATCAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

225

Amino Acids

25.93

Weight (kDa)

6.26

Isoelectric Point (pI)

51.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 367
AciI CCGC 1 cut(s) 347
AclWI GGATC 5 cut(s) 13, 60, 588, 601, 672
AcsI RAATTY 2 cut(s) 42, 172
AfaI GTAC 1 cut(s) 626
AfiI CCNNNNNNNGG 1 cut(s) 367
AgsI TTSAA 3 cut(s) 47, 81, 641
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 4 cut(s) 148, 247, 276, 480
AluI AGCT 4 cut(s) 148, 247, 276, 480
Alw21I GWGCWC 1 cut(s) 338
Alw26I GTCTC 3 cut(s) 233, 489, 647
AlwI GGATC 5 cut(s) 13, 60, 588, 601, 672
ApeKI GCWGC 3 cut(s) 247, 554, 616
ApoI RAATTY 2 cut(s) 42, 172
Asp700I GAANNNNTTC 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 372
AsuHPI GGTGA 3 cut(s) 112, 404, 418
AvaII GGWCC 1 cut(s) 372
BamHI GGATCC 1 cut(s) 593
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 338
BbvI GCAGC 3 cut(s) 234, 541, 628
BccI CCATC 1 cut(s) 361
BciT130I CCWGG 1 cut(s) 179
BclI TGATCA 2 cut(s) 199, 393
BcoDI GTCTC 3 cut(s) 233, 489, 647
BfaI CTAG 2 cut(s) 236, 404
BfmI CTRYAG 2 cut(s) 248, 614
BisI GCNGC 3 cut(s) 248, 555, 617
BlsI GCNGC 3 cut(s) 249, 556, 618
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 372
BmiI GGNNCC 3 cut(s) 183, 373, 595
BmrFI CCNGG 1 cut(s) 179
BpiI GAAGAC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 401
BsaAI YACGTR 1 cut(s) 518
BsaBI GATNNNNATC 1 cut(s) 57
BsaJI CCNNGG 3 cut(s) 84, 177, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse1I ACTGG 2 cut(s) 384, 415
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 3 cut(s) 84, 177, 258
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 2 cut(s) 558, 642
BseNI ACTGG 2 cut(s) 384, 415
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 3 cut(s) 234, 541, 628
BsgI GTGCAG 1 cut(s) 540
BsiHKAI GWGCWC 1 cut(s) 338
BslFI GGGAC 1 cut(s) 647
BslI CCNNNNNNNGG 1 cut(s) 367
BsmAI GTCTC 3 cut(s) 233, 489, 647
BsmFI GGGAC 1 cut(s) 647
Bsp1286I GDGCHC 1 cut(s) 338
Bsp143I GATC 8 cut(s) 5, 34, 52, 199, 296, 393, 593, 664
BspACI CCGC 1 cut(s) 347
BspCNI CTCAG 2 cut(s) 559, 643
BspLI GGNNCC 3 cut(s) 183, 373, 595
BspMAI CTGCAG 2 cut(s) 252, 618
BspPI GGATC 5 cut(s) 13, 60, 588, 601, 672
BsrI ACTGG 2 cut(s) 384, 415
BssECI CCNNGG 3 cut(s) 84, 177, 258
BssMI GATC 8 cut(s) 5, 34, 52, 199, 296, 393, 593, 664
BssT1I CCWWGG 2 cut(s) 84, 258
Bst2UI CCWGG 1 cut(s) 179
Bst6I CTCTTC 2 cut(s) 21, 260
BstAPI GCANNNNNTGC 1 cut(s) 333
BstBAI YACGTR 1 cut(s) 518
BstC8I GCNNGC 3 cut(s) 310, 474, 478
BstDEI CTNAG 3 cut(s) 188, 567, 651
BstKTI GATC 8 cut(s) 8, 37, 55, 202, 299, 396, 596, 667
BstMAI GTCTC 3 cut(s) 233, 489, 647
BstMBI GATC 8 cut(s) 5, 34, 52, 199, 296, 393, 593, 664
BstMWI GCNNNNNNNGC 1 cut(s) 333
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 2 cut(s) 312, 476
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 2 cut(s) 248, 614
BstV1I GCAGC 3 cut(s) 234, 541, 628
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 593
BstYI RGATCY 1 cut(s) 593
BtgZI GCGATG 1 cut(s) 618
BtsIMutI CAGTG 2 cut(s) 377, 403
Cac8I GCNNGC 3 cut(s) 310, 474, 478
Cfr13I GGNCC 1 cut(s) 372
Csp6I GTAC 1 cut(s) 625
CviAII CATG 5 cut(s) 309, 328, 362, 421, 473
CviJI RGCY 9 cut(s) 148, 184, 215, 234, 247, 276, 403, 480, 554
CviKI_1 RGCY 9 cut(s) 148, 184, 215, 234, 247, 276, 403, 480, 554
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 3 cut(s) 188, 567, 651
DpnI GATC 8 cut(s) 7, 36, 54, 201, 298, 395, 595, 666
DpnII GATC 8 cut(s) 5, 34, 52, 199, 296, 393, 593, 664
Eam1104I CTCTTC 2 cut(s) 21, 260
EarI CTCTTC 2 cut(s) 21, 260
Eco130I CCWWGG 2 cut(s) 84, 258
Eco47I GGWCC 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 2 cut(s) 84, 258
ErhI CCWWGG 2 cut(s) 84, 258
FaeI CATG 5 cut(s) 312, 331, 365, 424, 476
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FaqI GGGAC 1 cut(s) 647
FatI CATG 5 cut(s) 308, 327, 361, 420, 472
FbaI TGATCA 2 cut(s) 199, 393
Fnu4HI GCNGC 3 cut(s) 248, 555, 617
Fsp4HI GCNGC 3 cut(s) 248, 555, 617
FspBI CTAG 2 cut(s) 236, 404
GluI GCNGC 3 cut(s) 248, 555, 617
GsuI CTGGAG 1 cut(s) 401
Hin1II CATG 5 cut(s) 312, 331, 365, 424, 476
HinfI GANTC 2 cut(s) 497, 582
HphI GGTGA 3 cut(s) 112, 404, 418
Hpy166II GTNNAC 3 cut(s) 375, 426, 448
Hpy188I TCNGA 1 cut(s) 674
Hpy188III TCNNGA 3 cut(s) 449, 586, 650
Hpy8I GTNNAC 3 cut(s) 375, 426, 448
HpyCH4IV ACGT 2 cut(s) 510, 517
HpyCH4V TGCA 7 cut(s) 250, 308, 312, 472, 521, 557, 616
HpyF10VI GCNNNNNNNGC 1 cut(s) 333
HpyF3I CTNAG 3 cut(s) 188, 567, 651
HpySE526I ACGT 2 cut(s) 510, 517
Hsp92II CATG 5 cut(s) 312, 331, 365, 424, 476
Ksp22I TGATCA 2 cut(s) 199, 393
Kzo9I GATC 8 cut(s) 5, 34, 52, 199, 296, 393, 593, 664
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 8 cut(s) 100, 164, 191, 210, 365, 428, 613, 663
Lsp1109I GCAGC 3 cut(s) 234, 541, 628
MaeI CTAG 2 cut(s) 236, 404
MaeII ACGT 2 cut(s) 510, 517
MalI GATC 8 cut(s) 7, 36, 54, 201, 298, 395, 595, 666
MboI GATC 8 cut(s) 5, 34, 52, 199, 296, 393, 593, 664
MboII GAAGA 8 cut(s) 38, 66, 69, 121, 277, 464, 591, 620
MflI RGATCY 1 cut(s) 593
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 4 cut(s) 42, 172, 435, 572
MlyI GAGTC 1 cut(s) 491
MnlI CCTC 8 cut(s) 90, 146, 170, 174, 261, 324, 376, 517
MroXI GAANNNNTTC 1 cut(s) 435
MseI TTAA 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 333
NdeII GATC 8 cut(s) 5, 34, 52, 199, 296, 393, 593, 664
NlaIII CATG 5 cut(s) 312, 331, 365, 424, 476
NlaIV GGNNCC 3 cut(s) 183, 373, 595
NspI RCATGY 2 cut(s) 312, 476
PaeI GCATGC 2 cut(s) 312, 476
PdmI GAANNNNTTC 1 cut(s) 435
PfeI GAWTC 1 cut(s) 582
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 3 cut(s) 249, 556, 618
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
Ppu21I YACGTR 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 3 cut(s) 183, 373, 595
PspPI GGNCC 1 cut(s) 372
PstI CTGCAG 2 cut(s) 252, 618
PsuI RGATCY 1 cut(s) 593
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 3 cut(s) 248, 555, 617
Sau3AI GATC 8 cut(s) 5, 34, 52, 199, 296, 393, 593, 664
Sau96I GGNCC 1 cut(s) 372
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 1 cut(s) 338
SfcI CTRYAG 2 cut(s) 248, 614
SinI GGWCC 1 cut(s) 372
SphI GCATGC 2 cut(s) 312, 476
Sse9I AATT 4 cut(s) 42, 172, 435, 572
SsiI CCGC 1 cut(s) 347
SspI AATATT 1 cut(s) 504
SspMI CTAG 2 cut(s) 236, 404
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 2 cut(s) 84, 258
TaiI ACGT 2 cut(s) 513, 520
TaqI TCGA 1 cut(s) 354
TasI AATT 4 cut(s) 42, 172, 435, 572
TfiI GAWTC 1 cut(s) 582
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 2 cut(s) 384, 403
TseI GCWGC 3 cut(s) 247, 554, 616
TspDTI ATGAA 4 cut(s) 143, 225, 409, 621
TspRI CASTG 2 cut(s) 384, 403
Van91I CCANNNNNTGG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 372
XapI RAATTY 2 cut(s) 42, 172
XceI RCATGY 2 cut(s) 312, 476
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 2 cut(s) 236, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.