FvH4_6g28210

Transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
21723288 .. 21727230
3943 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28210.t2

Sequence Viewer

Length: 1497 bp
ATGGAAATGGAGGCAGACTCTCAGGAAAGAGAAGCTCTCCACCATGAAGCCCAGAACAAAAAGGAGAAGTTTTCTGTGAAGGGTCTCTGGGATTTGCTATGGAGTCCCATAAATTGGGTCAAAATGCTCAGTAGGGAGTTGCATTGGAGCTTTGTGATCAGTGTGGTCATGGTGTATGGAATCAGTCAGGGTCTGAGTATGGGATTGAGTAGAATTAGCATACAGTATTACTTGAAAGATGAGCAGAAAGTGCAGCCCTCTGAGGCCCAAGTGTACTTGGGGATCATTCAAATTCCATGGATGGTTAAACCACTTTGGGGTCTTTTCACTGATGCTCTTCCTATTCTTGGGTACCGCAGAAAGCCTTACTTTGTTTTTGCTGGTCTAATTGGAGTTGTCTCCATGCTTGTGCTATCACTGGACAAGAAATTAGATCTCACAATGTCCCTGTTGTCTCTCATGGTGGGGAGTGCTGGAGTAGCAATAGCAGATGTGACAATTGATGCTTGTGTTACAGAAAACAGTATTAGTCACCCATCCCTTGCTGGTGACATGCAAAGCTTGTGTGGACTGACCTCTTCAGTTGGGGCACTGGTGGGATTCTCAGTTAGTGGATTTTTTGTTCACCTACTAGGGCCTAAGGGTGTGTTTGGGTTGCTCAGCATCCCTCCGGCACTGGTCATTTTTGTAGGGATGATGCTTAGAGAATCCCATTTGCACAACTTTTCTCATAGACGGGTCAGTGAAAAGTTCGTGGATTCTGGAAAGGCTATGTGGACAACCCTAAAATGCAGCAGTGTATGGAGACCTTGTTTGTATATGTATTTGTCACTTGCTTTGAGCTTGAGTGTTCGTGAAGGAATGTTTTACTGGTACACAGATGCAAAGGGGGGTCCATCTTTTTCAAAGGAGGTTGTTGGGTCTATATTCTCTATTGGTGCTCTTGGCTCCCTTTTTGGGGTCCTCCTCTACCAGAACTTTTTTAAAAGTTACCCTTTCCGTGATGTGCTCTTCTGGACTCAGTTACTCTATGGTTTATCAGGATTGCTAGACTTGGTATTCGTGTTGCGCATAAATTTGAAACTTGGTTTACCAGACTATCTTTTTGTTGTGATCGATGAAGCAGTTTCTCAGATGATTGGGCGTCTTAAGTGGATGCCTCTTCTTGTACTTAGTTCAAAACTCTGCCCTGCGGGTATAGAGGGCACTTTCTTTGCTCTGCTCATGTCCATTGATCATGTTGGCATTCTCTCATCTACTTGGGCTGGAGGCCTCCTACTCCACATCTTAAATATCACACGGACACAGTTTGAAAATCTTTGGATGGCCATTTTAATAAGGAGCATATTGAGAATTTTGCCAATTGCACTGCTTTTCTTAATACCTCGAGCTGATCCAAGTTCCTCTATTCTTCCATCTGAGATGTTGAGGACCAAAAAAGGTGATGATCTTGAGTCTGAAAATGTTGAAATGGCCTCCCTTGTCAATGGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

499

Amino Acids

55.44

Weight (kDa)

7.67

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 61 - 349 4.9e-10 Major Facilitator Superfamily
BT1 PF03092 63 - 465 5.1e-121 BT1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1070
Acc65I GGTACC 1 cut(s) 351
AccB1I GGYRCC 1 cut(s) 351
AccB7I CCANNNNNTGG 1 cut(s) 114
AciI CCGC 2 cut(s) 355, 1193
AclWI GGATC 2 cut(s) 290, 1388
AcoI YGGCCR 1 cut(s) 1326
AcsI RAATTY 3 cut(s) 291, 1075, 1353
AcuI CTGAAG 1 cut(s) 564
AcyI GRCGYC 1 cut(s) 1144
AfaI GTAC 4 cut(s) 275, 353, 875, 1170
AfiI CCNNNNNNNGG 5 cut(s) 114, 317, 347, 957, 958
AflII CTTAAG 1 cut(s) 1148
AgsI TTSAA 7 cut(s) 235, 290, 906, 1081, 1179, 1313, 1469
AloI GAACNNNNNNTCC 2 cut(s) 606, 638
AluBI AGCT 5 cut(s) 35, 150, 561, 843, 1391
AluI AGCT 5 cut(s) 35, 150, 561, 843, 1391
Alw21I GWGCWC 2 cut(s) 943, 1011
Alw26I GTCTC 4 cut(s) 89, 403, 459, 799
AlwI GGATC 2 cut(s) 290, 1388
AlwNI CAGNNNCTG 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 1386
AoxI GGCC 5 cut(s) 264, 635, 1270, 1326, 1473
ApeKI GCWGC 2 cut(s) 253, 792
ApoI RAATTY 3 cut(s) 291, 1075, 1353
ArsI GACNNNNNNTTYG 4 cut(s) 1043, 1075, 1088, 1120
Asp718I GGTACC 1 cut(s) 351
AspLEI GCGC 1 cut(s) 1071
AspS9I GGNCC 5 cut(s) 265, 635, 893, 961, 1431
AsuHPI GGTGA 4 cut(s) 524, 560, 617, 1454
AvaI CYCGRG 1 cut(s) 1386
AvaII GGWCC 3 cut(s) 893, 961, 1431
AxyI CCTNAGG 1 cut(s) 639
BaeGI GKGCMC 2 cut(s) 592, 1208
BalI TGGCCA 1 cut(s) 1328
BanI GGYRCC 1 cut(s) 351
Bbv12I GWGCWC 2 cut(s) 943, 1011
BbvI GCAGC 2 cut(s) 265, 804
BccI CCATC 5 cut(s) 295, 544, 904, 1318, 1423
BclI TGATCA 2 cut(s) 156, 1234
BcoDI GTCTC 4 cut(s) 89, 403, 459, 799
BfaI CTAG 2 cut(s) 632, 1049
BfrI CTTAAG 1 cut(s) 1148
BglII AGATCT 1 cut(s) 433
BisI GCNGC 2 cut(s) 254, 793
BlpI GCTNAGC 1 cut(s) 659
BlsI GCNGC 2 cut(s) 255, 794
Bme18I GGWCC 3 cut(s) 893, 961, 1431
BmeT110I CYCGRG 1 cut(s) 1386
BmgT120I GGNCC 5 cut(s) 265, 635, 893, 961, 1431
BmiI GGNNCC 4 cut(s) 353, 894, 949, 962
BmsI GCATC 6 cut(s) 322, 493, 672, 687, 871, 1146
BplI GAGNNNNNCTC 3 cut(s) 34, 21, 53
BpmI CTGGAG 2 cut(s) 495, 1287
Bpu1102I GCTNAGC 1 cut(s) 659
BpuEI CTTGAG 2 cut(s) 865, 1472
Bsa29I ATCGAT 1 cut(s) 1116
BsaHI GRCGYC 1 cut(s) 1144
BsaI GGTCTC 2 cut(s) 89, 799
BsaJI CCNNGG 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 796, 826
Bsc4I CCNNNNNNNGG 5 cut(s) 114, 317, 347, 957, 958
Bse1I ACTGG 4 cut(s) 423, 597, 681, 875
Bse21I CCTNAGG 1 cut(s) 639
BseCI ATCGAT 1 cut(s) 1116
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 6 cut(s) 306, 536, 663, 699, 1161, 1329
BseLI CCNNNNNNNGG 5 cut(s) 114, 317, 347, 957, 958
BseMII CTCAG 9 cut(s) 35, 142, 185, 252, 618, 673, 1034, 1145, 1410
BseNI ACTGG 4 cut(s) 423, 597, 681, 875
BseRI GAGGAG 1 cut(s) 956
BseSI GKGCMC 2 cut(s) 592, 1208
BseXI GCAGC 2 cut(s) 265, 804
BsgI GTGCAG 1 cut(s) 272
BshFI GGCC 5 cut(s) 266, 637, 1272, 1328, 1475
BshNI GGYRCC 1 cut(s) 351
BshVI ATCGAT 1 cut(s) 1116
BsiHKAI GWGCWC 2 cut(s) 943, 1011
BsiHKCI CYCGRG 1 cut(s) 1386
BsiSI CCGG 1 cut(s) 671
BslFI GGGAC 2 cut(s) 90, 430
BslI CCNNNNNNNGG 5 cut(s) 114, 317, 347, 957, 958
BsmAI GTCTC 4 cut(s) 89, 403, 459, 799
BsmFI GGGAC 2 cut(s) 90, 430
BsmI GAATGC 1 cut(s) 1245
BsnI GGCC 5 cut(s) 266, 637, 1272, 1328, 1475
Bso31I GGTCTC 2 cut(s) 89, 799
BsoBI CYCGRG 1 cut(s) 1386
Bsp1286I GDGCHC 4 cut(s) 592, 943, 1011, 1208
Bsp143I GATC 7 cut(s) 156, 282, 433, 1113, 1234, 1393, 1447
Bsp1720I GCTNAGC 1 cut(s) 659
Bsp19I CCATGG 1 cut(s) 296
BspACI CCGC 2 cut(s) 355, 1193
BspANI GGCC 5 cut(s) 266, 637, 1272, 1328, 1475
BspCNI CTCAG 9 cut(s) 34, 141, 186, 253, 617, 672, 1033, 1144, 1411
BspDI ATCGAT 1 cut(s) 1116
BspLI GGNNCC 4 cut(s) 353, 894, 949, 962
BspPI GGATC 2 cut(s) 290, 1388
BspQI GCTCTTC 2 cut(s) 342, 1016
BspT107I GGYRCC 1 cut(s) 351
BspTI CTTAAG 1 cut(s) 1148
BspTNI GGTCTC 2 cut(s) 89, 799
BsrI ACTGG 4 cut(s) 423, 597, 681, 875
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 7 cut(s) 156, 282, 433, 1113, 1234, 1393, 1447
BssNI GRCGYC 1 cut(s) 1144
BssT1I CCWWGG 1 cut(s) 296
Bst4CI ACNGT 3 cut(s) 225, 524, 1308
Bst6I CTCTTC 4 cut(s) 342, 583, 1016, 1167
BstACI GRCGYC 1 cut(s) 1144
BstAFI CTTAAG 1 cut(s) 1148
BstAPI GCANNNNNTGC 1 cut(s) 250
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 6 cut(s) 306, 536, 663, 699, 1161, 1329
BstHHI GCGC 1 cut(s) 1071
BstKTI GATC 7 cut(s) 159, 285, 436, 1116, 1237, 1396, 1450
BstMAI GTCTC 4 cut(s) 89, 403, 459, 799
BstMBI GATC 7 cut(s) 156, 282, 433, 1113, 1234, 1393, 1447
BstMWI GCNNNNNNNGC 2 cut(s) 250, 479
BstNSI RCATGY 1 cut(s) 556
BstSLI GKGCMC 2 cut(s) 592, 1208
BstV1I GCAGC 2 cut(s) 265, 804
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
Bsu15I ATCGAT 1 cut(s) 1116
Bsu36I CCTNAGG 1 cut(s) 639
BsuRI GGCC 5 cut(s) 266, 637, 1272, 1328, 1475
BsuTUI ATCGAT 1 cut(s) 1116
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 6 cut(s) 306, 536, 663, 699, 1161, 1329
BtsI GCAGTG 2 cut(s) 802, 1367
BtsIMutI CAGTG 8 cut(s) 166, 327, 416, 590, 674, 748, 802, 1367
CaiI CAGNNNCTG 1 cut(s) 193
CfoI GCGC 1 cut(s) 1071
Cfr13I GGNCC 5 cut(s) 265, 635, 893, 961, 1431
ClaI ATCGAT 1 cut(s) 1116
CseI GACGC 1 cut(s) 1133
Csp6I GTAC 4 cut(s) 274, 352, 874, 1169
CviAII CATG 8 cut(s) 44, 169, 297, 403, 460, 553, 1225, 1238
CviQI GTAC 4 cut(s) 274, 352, 874, 1169
DpnI GATC 7 cut(s) 158, 284, 435, 1115, 1236, 1395, 1449
DpnII GATC 7 cut(s) 156, 282, 433, 1113, 1234, 1393, 1447
DraI TTTAAA 1 cut(s) 985
EaeI YGGCCR 1 cut(s) 1326
Eam1104I CTCTTC 4 cut(s) 342, 583, 1016, 1167
EarI CTCTTC 4 cut(s) 342, 583, 1016, 1167
Eco130I CCWWGG 1 cut(s) 296
Eco147I AGGCCT 1 cut(s) 1272
Eco31I GGTCTC 2 cut(s) 89, 799
Eco47I GGWCC 3 cut(s) 893, 961, 1431
Eco57I CTGAAG 1 cut(s) 564
Eco81I CCTNAGG 1 cut(s) 639
Eco88I CYCGRG 1 cut(s) 1386
EcoO109I RGGNCCY 2 cut(s) 635, 961
EcoT14I CCWWGG 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 8 cut(s) 47, 172, 300, 406, 463, 556, 1228, 1241
FalI AAGNNNNNCTT 4 cut(s) 353, 385, 979, 1011
FaqI GGGAC 2 cut(s) 90, 430
FatI CATG 8 cut(s) 43, 168, 296, 402, 459, 552, 1224, 1237
FauI CCCGC 1 cut(s) 1186
FbaI TGATCA 2 cut(s) 156, 1234
Fnu4HI GCNGC 2 cut(s) 254, 793
FokI GGATG 6 cut(s) 313, 523, 650, 706, 1168, 1336
Fsp4HI GCNGC 2 cut(s) 254, 793
FspBI CTAG 2 cut(s) 632, 1049
FspI TGCGCA 1 cut(s) 1070
GlaI GCGC 1 cut(s) 1070
GluI GCNGC 2 cut(s) 254, 793
GsuI CTGGAG 2 cut(s) 495, 1287
HaeIII GGCC 5 cut(s) 266, 637, 1272, 1328, 1475
HapII CCGG 1 cut(s) 671
HgaI GACGC 1 cut(s) 1133
HhaI GCGC 1 cut(s) 1071
Hin1I GRCGYC 1 cut(s) 1144
Hin1II CATG 8 cut(s) 47, 172, 300, 406, 463, 556, 1228, 1241
Hin6I GCGC 1 cut(s) 1069
HinP1I GCGC 1 cut(s) 1069
HindIII AAGCTT 1 cut(s) 559
HinfI GANTC 8 cut(s) 17, 103, 180, 600, 707, 758, 1018, 1454
HpaII CCGG 1 cut(s) 671
HphI GGTGA 4 cut(s) 524, 560, 617, 1454
Hpy166II GTNNAC 6 cut(s) 274, 569, 625, 777, 876, 1091
Hpy188I TCNGA 6 cut(s) 195, 262, 1134, 1420, 1459, 1496
Hpy188III TCNNGA 6 cut(s) 23, 762, 854, 1015, 1041, 1451
Hpy8I GTNNAC 6 cut(s) 274, 569, 625, 777, 876, 1091
HpyAV CCTTC 2 cut(s) 73, 851
HpyCH4III ACNGT 3 cut(s) 225, 524, 1308
HpyCH4V TGCA 7 cut(s) 142, 253, 556, 718, 792, 884, 1367
HpyF10VI GCNNNNNNNGC 2 cut(s) 250, 479
Hsp92I GRCGYC 1 cut(s) 1144
Hsp92II CATG 8 cut(s) 47, 172, 300, 406, 463, 556, 1228, 1241
HspAI GCGC 1 cut(s) 1069
KpnI GGTACC 1 cut(s) 355
Ksp22I TGATCA 2 cut(s) 156, 1234
Kzo9I GATC 7 cut(s) 156, 282, 433, 1113, 1234, 1393, 1447
LguI GCTCTTC 2 cut(s) 342, 1016
LmnI GCTCC 3 cut(s) 147, 953, 1341
Lsp1109I GCAGC 2 cut(s) 265, 804
LweI GCATC 6 cut(s) 322, 493, 672, 687, 871, 1146
MaeI CTAG 2 cut(s) 632, 1049
MaeIII GTNAC 7 cut(s) 493, 511, 530, 548, 828, 989, 1023
MalI GATC 7 cut(s) 158, 284, 435, 1115, 1236, 1395, 1449
MboI GATC 7 cut(s) 156, 282, 433, 1113, 1234, 1393, 1447
MboII GAAGA 5 cut(s) 329, 570, 1003, 1154, 1403
MfeI CAATTG 2 cut(s) 498, 1362
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 4 cut(s) 592, 943, 1011, 1208
MlsI TGGCCA 1 cut(s) 1328
MluCI AATT 9 cut(s) 112, 213, 291, 387, 428, 498, 1075, 1353, 1362
MluNI TGGCCA 1 cut(s) 1328
MlyI GAGTC 4 cut(s) 11, 112, 1012, 1463
Mox20I TGGCCA 1 cut(s) 1328
MscI TGGCCA 1 cut(s) 1328
MseI TTAA 6 cut(s) 306, 984, 1149, 1289, 1334, 1379
MslI CAYNNNNRTG 1 cut(s) 407
Msp20I TGGCCA 1 cut(s) 1328
MspCI CTTAAG 1 cut(s) 1148
MspI CCGG 1 cut(s) 671
MunI CAATTG 2 cut(s) 498, 1362
Mva1269I GAATGC 1 cut(s) 1245
MwoI GCNNNNNNNGC 2 cut(s) 250, 479
NcoI CCATGG 1 cut(s) 296
NdeII GATC 7 cut(s) 156, 282, 433, 1113, 1234, 1393, 1447
NlaIII CATG 8 cut(s) 47, 172, 300, 406, 463, 556, 1228, 1241
NlaIV GGNNCC 4 cut(s) 353, 894, 949, 962
NmuCI GTSAC 4 cut(s) 493, 530, 548, 828
NsbI TGCGCA 1 cut(s) 1070
NspI RCATGY 1 cut(s) 556
PaeR7I CTCGAG 1 cut(s) 1386
PceI AGGCCT 1 cut(s) 1272
PciSI GCTCTTC 2 cut(s) 342, 1016
PctI GAATGC 1 cut(s) 1245
PfeI GAWTC 4 cut(s) 180, 600, 707, 758
PflMI CCANNNNNTGG 1 cut(s) 114
PkrI GCNGC 2 cut(s) 255, 794
PleI GAGTC 4 cut(s) 11, 111, 1012, 1462
PpsI GAGTC 4 cut(s) 11, 111, 1012, 1462
PpuMI RGGWCCY 1 cut(s) 961
Psp5II RGGWCCY 1 cut(s) 961
PspN4I GGNNCC 4 cut(s) 353, 894, 949, 962
PspPI GGNCC 5 cut(s) 265, 635, 893, 961, 1431
PspPPI RGGWCCY 1 cut(s) 961
PspXI VCTCGAGB 1 cut(s) 1386
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 433
RsaI GTAC 4 cut(s) 275, 353, 875, 1170
RsaNI GTAC 4 cut(s) 274, 352, 874, 1169
RseI CAYNNNNRTG 1 cut(s) 407
SapI GCTCTTC 2 cut(s) 342, 1016
SaqAI TTAA 6 cut(s) 306, 984, 1149, 1289, 1334, 1379
SatI GCNGC 2 cut(s) 254, 793
Sau3AI GATC 7 cut(s) 156, 282, 433, 1113, 1234, 1393, 1447
Sau96I GGNCC 5 cut(s) 265, 635, 893, 961, 1431
SchI GAGTC 4 cut(s) 11, 112, 1012, 1463
SduI GDGCHC 4 cut(s) 592, 943, 1011, 1208
SfaNI GCATC 6 cut(s) 322, 493, 672, 687, 871, 1146
Sfr274I CTCGAG 1 cut(s) 1386
SinI GGWCC 3 cut(s) 893, 961, 1431
SlaI CTCGAG 1 cut(s) 1386
SmiMI CAYNNNNRTG 1 cut(s) 407
SmlI CTYRAG 4 cut(s) 844, 1148, 1386, 1451
SmoI CTYRAG 4 cut(s) 844, 1148, 1386, 1451
Sse9I AATT 9 cut(s) 112, 213, 291, 387, 428, 498, 1075, 1353, 1362
SseBI AGGCCT 1 cut(s) 1272
SsiI CCGC 2 cut(s) 355, 1193
SspMI CTAG 2 cut(s) 632, 1049
StuI AGGCCT 1 cut(s) 1272
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 3 cut(s) 225, 524, 1308
TaqI TCGA 2 cut(s) 1116, 1387
TasI AATT 9 cut(s) 112, 213, 291, 387, 428, 498, 1075, 1353, 1362
TatI WGTACW 2 cut(s) 273, 1168
TfiI GAWTC 4 cut(s) 180, 600, 707, 758
Tru1I TTAA 6 cut(s) 306, 984, 1149, 1289, 1334, 1379
Tru9I TTAA 6 cut(s) 306, 984, 1149, 1289, 1334, 1379
TscAI CASTG 8 cut(s) 166, 334, 423, 597, 681, 748, 802, 1374
TseFI GTSAC 4 cut(s) 493, 530, 548, 828
TseI GCWGC 2 cut(s) 253, 792
Tsp45I GTSAC 4 cut(s) 493, 530, 548, 828
TspDTI ATGAA 2 cut(s) 60, 1134
TspGWI ACGGA 2 cut(s) 989, 1315
TspRI CASTG 8 cut(s) 166, 334, 423, 597, 681, 748, 802, 1374
Van91I CCANNNNNTGG 1 cut(s) 114
Vha464I CTTAAG 1 cut(s) 1148
VpaK11BI GGWCC 3 cut(s) 893, 961, 1431
XapI RAATTY 3 cut(s) 291, 1075, 1353
XceI RCATGY 1 cut(s) 556
XhoI CTCGAG 1 cut(s) 1386
XspI CTAG 2 cut(s) 632, 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.