Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006493

Physical Location & Seq

Genomic Coordinates Reverse (-)

21384811 .. 21385923

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g23000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCTTGTGTTATCACTAGACAAGAATTTAAATCTCACAATGTCCTTGCTGGCTCTGATGGCGGGGAGTGCTGGAGTAGCAATTGCCGATGTAACAATTGATGCCTGTGTTACACAGAACAGTATAAGACATCCATCCCTTGCTGGTGACATGCAAAGCTTGTGTGGACTGAGCTCTTCAGTTGGGGCACTGGTCGGATTTTCACTTAGTGGGTTTCTTGTTCACCTTGTGGGCCCTAAGGGTGTGTTTGGGTTGCTCAGCATCCCTCCAGGGCTGGTCGTTTTGGTTGGGATAATGCATAGAGAATCTCATGTGCACAACTTTGCTTATAAACAGGTCAGTGTAAAGTTACTGGATGCTGGTCAGGCTATGTGGACAACATTAAAATGCGGTAGCGTATGGAGGCCTTGTTTATATATGTACTTGTCACTTGCTTTGGCCTTGAATGTTCGTGAAGGAATGTTTTATTGGTACACTGATGCAAAGGAGGGTCCATCTTTCTCTAAGGAGATTGTTGGATCCATATTCTCTATAGGTGCTGTTGGCTCCCTTTTGGGGGTCCTTCTCTACCAGAACTTTTTCAAAAAATTACCCTTTCAGGGATGTTCTTTTCTGGACTCAGTTGCTCTATGGTGTTTCAGGATTGCTAGATTTGGTATTGGTGTTGCGCATAAATTTGAAATTTGGTTTGCCAGATTATTTTTTTGTTGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

239

Amino Acids

25.88

Weight (kDa)

8.8

Isoelectric Point (pI)

26.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79710 AT1G79710 AT1G79710
fragaria_vesca	FvH4_6g28210 FvH4_6g28210
malus_domestica	MD09G1228300.v1.1 MD17G1226600.v1.1
prunus_persica	Prupe.3G104000_v2.0.a1 Prupe.3G104000_v2.0.a1
pyrus_communis	pycom09g14730 pycom17g23000
rosa_chinensis	RchiOBHm_Chr2g0132271
rosa_laevigata	RLG00000019242
rosa_multiflora	Rmu_co8174094.1_g000001 Rmu_sc0002403.1_g000007
rosa_roxburghii	Rroxscaffold_1G00012850 Rroxscaffold_2G00102370 Rroxscaffold_2G00112210 Rroxscaffold_3G00267220 Rroxscaffold_3G00267230
rosa_rugosa	Rorug02G0303300
rosa_samantha	Rh2AG356300 Rh2BG362700 Rh2CG339800 Rh2DG379600
rosa_wichuraiana	Rw2G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
Acc16I	TGCGCA	1 cut(s)	669
AciI	CCGC	2 cut(s)	62, 390
AclWI	GGATC	2 cut(s)	513, 526
AcsI	RAATTY	3 cut(s)	25, 674, 681
AcuI	CTGAAG	1 cut(s)	162
AdeI	CACNNNGTG	2 cut(s)	209, 229
AfaI	GTAC	2 cut(s)	422, 473
AfiI	CCNNNNNNNGG	3 cut(s)	555, 556, 599
AgsI	TTSAA	3 cut(s)	445, 583, 680
AjnI	CCWGG	1 cut(s)	268
AjuI	GAANNNNNNNTTGG	2 cut(s)	451, 483
AluBI	AGCT	2 cut(s)	159, 174
AluI	AGCT	2 cut(s)	159, 174
Alw21I	GWGCWC	2 cut(s)	176, 318
Alw44I	GTGCAC	1 cut(s)	314
AlwI	GGATC	2 cut(s)	513, 526
AoxI	GGCC	3 cut(s)	232, 404, 438
ApaI	GGGCCC	1 cut(s)	236
ApaLI	GTGCAC	1 cut(s)	314
ApoI	RAATTY	3 cut(s)	25, 674, 681
Asp700I	GAANNNNTTC	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	4 cut(s)	232, 233, 491, 559
AsuHPI	GGTGA	2 cut(s)	158, 215
AvaII	GGWCC	2 cut(s)	491, 559
AxyI	CCTNAGG	1 cut(s)	237
BaeGI	GKGCMC	3 cut(s)	190, 236, 318
BamHI	GGATCC	1 cut(s)	518
BanII	GRGCYC	2 cut(s)	176, 236
Bbv12I	GWGCWC	2 cut(s)	176, 318
BccI	CCATC	3 cut(s)	52, 142, 502
BciT130I	CCWGG	1 cut(s)	270
BfaI	CTAG	2 cut(s)	17, 648
BfmI	CTRYAG	1 cut(s)	531
BlpI	GCTNAGC	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	2 cut(s)	491, 559
BmgT120I	GGNCC	4 cut(s)	232, 233, 491, 559
BmiI	GGNNCC	5 cut(s)	234, 492, 520, 547, 560
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	4 cut(s)	91, 270, 346, 469
BpmI	CTGGAG	2 cut(s)	93, 252
Bpu1102I	GCTNAGC	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	3 cut(s)	555, 556, 599
Bse1I	ACTGG	2 cut(s)	195, 357
Bse21I	CCTNAGG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	5 cut(s)	130, 134, 261, 361, 608
BseLI	CCNNNNNNNGG	3 cut(s)	555, 556, 599
BseMII	CTCAG	3 cut(s)	161, 271, 633
BseNI	ACTGG	2 cut(s)	195, 357
BseSI	GKGCMC	3 cut(s)	190, 236, 318
BshFI	GGCC	3 cut(s)	234, 406, 440
BsiHKAI	GWGCWC	2 cut(s)	176, 318
BslI	CCNNNNNNNGG	3 cut(s)	555, 556, 599
BsnI	GGCC	3 cut(s)	234, 406, 440
Bsp120I	GGGCCC	1 cut(s)	232
Bsp1286I	GDGCHC	4 cut(s)	176, 190, 236, 318
Bsp143I	GATC	1 cut(s)	518
Bsp1720I	GCTNAGC	1 cut(s)	257
BspACI	CCGC	2 cut(s)	62, 390
BspANI	GGCC	3 cut(s)	234, 406, 440
BspCNI	CTCAG	3 cut(s)	162, 270, 632
BspLI	GGNNCC	5 cut(s)	234, 492, 520, 547, 560
BspPI	GGATC	2 cut(s)	513, 526
BspQI	GCTCTTC	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	195, 357
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	1 cut(s)	518
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	6 cut(s)	170, 206, 237, 257, 504, 619
BstF5I	GGATG	5 cut(s)	130, 134, 261, 361, 608
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	1 cut(s)	521
BstMBI	GATC	1 cut(s)	518
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 68, 77, 365
BstNI	CCWGG	1 cut(s)	270
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	3 cut(s)	190, 236, 318
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	234, 406, 440
BtsCI	GGATG	5 cut(s)	130, 134, 261, 361, 608
BtsIMutI	CAGTG	3 cut(s)	188, 346, 474
Cac8I	GCNNGC	1 cut(s)	51
CfoI	GCGC	1 cut(s)	670
Cfr13I	GGNCC	4 cut(s)	232, 233, 491, 559
Csp6I	GTAC	2 cut(s)	421, 472
CviAII	CATG	2 cut(s)	151, 311
CviJI	RGCY	9 cut(s)	53, 159, 174, 234, 274, 368, 406, 440, 546
CviKI_1	RGCY	9 cut(s)	53, 159, 174, 234, 274, 368, 406, 440, 546
CviQI	GTAC	2 cut(s)	421, 472
DdeI	CTNAG	6 cut(s)	170, 206, 237, 257, 504, 619
DpnI	GATC	1 cut(s)	520
DpnII	GATC	1 cut(s)	518
DraI	TTTAAA	1 cut(s)	30
DraIII	CACNNNGTG	2 cut(s)	209, 229
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	174
Eco147I	AGGCCT	1 cut(s)	406
Eco24I	GRGCYC	2 cut(s)	176, 236
Eco47I	GGWCC	2 cut(s)	491, 559
Eco53kI	GAGCTC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	162
Eco81I	CCTNAGG	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	174
EcoO109I	RGGNCCY	2 cut(s)	233, 559
EcoRII	CCWGG	1 cut(s)	268
EcoT22I	ATGCAT	1 cut(s)	300
EcoT38I	GRGCYC	2 cut(s)	176, 236
FaeI	CATG	2 cut(s)	154, 314
FatI	CATG	2 cut(s)	150, 310
FauI	CCCGC	1 cut(s)	55
FokI	GGATG	5 cut(s)	117, 121, 248, 368, 615
FriOI	GRGCYC	2 cut(s)	176, 236
FspBI	CTAG	2 cut(s)	17, 648
FspI	TGCGCA	1 cut(s)	669
GlaI	GCGC	1 cut(s)	669
GsuI	CTGGAG	2 cut(s)	93, 252
HaeIII	GGCC	3 cut(s)	234, 406, 440
HhaI	GCGC	1 cut(s)	670
Hin1II	CATG	2 cut(s)	154, 314
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	2 cut(s)	305, 617
HphI	GGTGA	2 cut(s)	158, 215
Hpy166II	GTNNAC	5 cut(s)	167, 223, 316, 375, 474
Hpy188I	TCNGA	2 cut(s)	57, 197
Hpy188III	TCNNGA	3 cut(s)	452, 614, 640
Hpy8I	GTNNAC	5 cut(s)	167, 223, 316, 375, 474
HpyAV	CCTTC	2 cut(s)	449, 572
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	4 cut(s)	154, 298, 316, 482
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 68, 77, 365
HpyF3I	CTNAG	6 cut(s)	170, 206, 237, 257, 504, 619
Hsp92II	CATG	2 cut(s)	154, 314
HspAI	GCGC	1 cut(s)	668
Kzo9I	GATC	1 cut(s)	518
LguI	GCTCTTC	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	551
LweI	GCATC	4 cut(s)	91, 270, 346, 469
MaeI	CTAG	2 cut(s)	17, 648
MaeIII	GTNAC	5 cut(s)	91, 109, 146, 348, 426
MalI	GATC	1 cut(s)	520
MboI	GATC	1 cut(s)	518
MboII	GAAGA	1 cut(s)	168
MfeI	CAATTG	2 cut(s)	81, 96
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	4 cut(s)	176, 190, 236, 318
MluCI	AATT	6 cut(s)	25, 81, 96, 587, 674, 681
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	2 cut(s)	175, 496
MnlI	CCTC	3 cut(s)	276, 396, 481
Mph1103I	ATGCAT	1 cut(s)	300
MroXI	GAANNNNTTC	1 cut(s)	578
MseI	TTAA	2 cut(s)	29, 383
MslI	CAYNNNNRTG	1 cut(s)	385
MspR9I	CCNGG	1 cut(s)	270
MunI	CAATTG	2 cut(s)	81, 96
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	4 cut(s)	59, 68, 77, 365
NdeII	GATC	1 cut(s)	518
NlaIII	CATG	2 cut(s)	154, 314
NlaIV	GGNNCC	5 cut(s)	234, 492, 520, 547, 560
NmuCI	GTSAC	2 cut(s)	146, 426
NsbI	TGCGCA	1 cut(s)	669
NsiI	ATGCAT	1 cut(s)	300
NspI	RCATGY	1 cut(s)	154
PceI	AGGCCT	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	578
PfeI	GAWTC	1 cut(s)	305
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
PpuMI	RGGWCCY	1 cut(s)	559
PsiI	TTATAA	1 cut(s)	330
Psp124BI	GAGCTC	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	5 cut(s)	234, 492, 520, 547, 560
PspOMI	GGGCCC	1 cut(s)	232
PspPI	GGNCC	4 cut(s)	232, 233, 491, 559
PspPPI	RGGWCCY	1 cut(s)	559
PsuI	RGATCY	1 cut(s)	518
RsaI	GTAC	2 cut(s)	422, 473
RsaNI	GTAC	2 cut(s)	421, 472
RseI	CAYNNNNRTG	1 cut(s)	385
SacI	GAGCTC	1 cut(s)	176
SapI	GCTCTTC	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	29, 383
Sau3AI	GATC	1 cut(s)	518
Sau96I	GGNCC	4 cut(s)	232, 233, 491, 559
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	4 cut(s)	176, 190, 236, 318
SetI	ASST	5 cut(s)	161, 176, 228, 339, 538
SfaNI	GCATC	4 cut(s)	91, 270, 346, 469
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	2 cut(s)	491, 559
SmiI	ATTTAAAT	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	385
Sse9I	AATT	6 cut(s)	25, 81, 96, 587, 674, 681
SseBI	AGGCCT	1 cut(s)	406
SsiI	CCGC	2 cut(s)	62, 390
SspMI	CTAG	2 cut(s)	17, 648
SstI	GAGCTC	1 cut(s)	176
StuI	AGGCCT	1 cut(s)	406
StyD4I	CCNGG	1 cut(s)	268
SwaI	ATTTAAAT	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	122
TasI	AATT	6 cut(s)	25, 81, 96, 587, 674, 681
TatI	WGTACW	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	2 cut(s)	29, 383
Tru9I	TTAA	2 cut(s)	29, 383
TscAI	CASTG	3 cut(s)	195, 346, 481
TseFI	GTSAC	2 cut(s)	146, 426
Tsp45I	GTSAC	2 cut(s)	146, 426
TspRI	CASTG	3 cut(s)	195, 346, 481
VneI	GTGCAC	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	491, 559
XapI	RAATTY	3 cut(s)	25, 674, 681
XceI	RCATGY	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	578
XspI	CTAG	2 cut(s)	17, 648
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.