Rh2DG379600

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006493
Physical Location & Seq
Forward (+)
54509741 .. 54516662
6922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG379600.1

Sequence Viewer

Length: 1140 bp
ATGTTTTTTTCCTTTCTCTTTCCAGGTGTAATTGGGGTTGTCTCCATGCTTGTGCTATCACTGGACAAGAAATTAGATCTTACAATGTCCCTGTTGTCCCTGATGGTGGGGAGTGCTGGAGTAGCAATAGCAGATGTGACAATTGATGCTTGTGTTACAGAAAACAGTATTAGTCACCCATCCCTTGCTGGTGACATGCAAAGCTTGTGTGGACTGACCTCTTCAGTTGGGGCACTGGTGGGATTCTCACTTAGTGGATTTTTCGTTCACCTATTAGGGCCTAAGGGTGTGTTTGGGTTGCTCAGCATTCCTCCGGGGCTGGTCATTTTCGTTGGGATGATGCTTAGGGAATCCCATTTGCACAGCTTTTCTCATAGACGGGTCAGTGAAAAGTTTCTGGATTCTGGAAAGGCTATGTGGACAACCCTAAAATGCAGCAGTGTATGGAGGCCTTGTTTGTACATGTATTTGTCACTTGCTTTGAGCTTGAGTGTCCGTGAAGGAATGTTTTACTGGTACACAGATGCAAAGGGGGGGCCAACTTTCTCAAAGGAGGTTGTTGGGTCCATATTCTCTATTGGTGCTCTTGGCTCCCTTTTTGGGGTCCTCCTCTACCAAAACTTCTTGAAAAGTTACCCTTTCCGTGATGTGCTTTTCTGGACTCAGTTACTCTATGGTATATCAGGATTGCTAGACTTGGTATTCGTGTTGCGCATAAATTTGAAACTCGGTTTACCAGACTATCTTTTTGTTGTGATTGATGAAGCAGTTTCTCAGATGATTGGGCGCCTTAAGTGGATGCCTCTTCTTGTACTTAGTTCAAAACTCTGCCCTGCGGGTATAGAAGGCACTTTCTTTGCTTTGCTCATGTCCATTGATCATGTTGGGATTCTCTCATCTACTTGGGCTGGAGGCCTCTTACTCCACATCTTGAATATCACACGGACACGGTTTGAAAATCTTTGGATGGCCATTTTGATTCGGAGCATATTGAGAATTTTGCCAATTGCACTACTTTTCTTAATACCTCGAACTGATCCAAACTCCTCTATTCTTCCATCTGAGATGTTGAGGACCAAAAAAGGTGATGATCTTGAGTCTGAAAATCTTGAAATGGCCTCCCTTGTCAATGGTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BT1

Protein Analysis

379

Amino Acids

41.62

Weight (kDa)

7.67

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BT1 PF03092 9 - 347 5.2e-93 BT1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 713
AccB1I GGYRCC 1 cut(s) 786
AciI CCGC 1 cut(s) 836
AclWI GGATC 1 cut(s) 1031
AcoI YGGCCR 1 cut(s) 969
AcsI RAATTY 2 cut(s) 718, 996
AcuI CTGAAG 1 cut(s) 207
AcyI GRCGYC 1 cut(s) 787
AdeI CACNNNGTG 1 cut(s) 254
AfaI GTAC 3 cut(s) 461, 518, 813
AfiI CCNNNNNNNGG 3 cut(s) 106, 600, 601
AflII CTTAAG 1 cut(s) 791
AflIII ACRYGT 1 cut(s) 462
AgsI TTSAA 6 cut(s) 628, 724, 822, 934, 956, 1112
AjnI CCWGG 1 cut(s) 22
AloI GAACNNNNNNTCC 2 cut(s) 249, 281
AluBI AGCT 3 cut(s) 204, 366, 486
AluI AGCT 3 cut(s) 204, 366, 486
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 1 cut(s) 1031
AoxI GGCC 6 cut(s) 278, 449, 536, 913, 969, 1116
ApeKI GCWGC 1 cut(s) 435
ApoI RAATTY 2 cut(s) 718, 996
ArsI GACNNNNNNTTYG 4 cut(s) 686, 718, 731, 763
Asp700I GAANNNNTTC 1 cut(s) 393
AspLEI GCGC 2 cut(s) 714, 789
AspS9I GGNCC 5 cut(s) 278, 536, 564, 604, 1074
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 4 cut(s) 167, 203, 260, 1097
AvaII GGWCC 3 cut(s) 564, 604, 1074
AxyI CCTNAGG 1 cut(s) 282
BaeGI GKGCMC 1 cut(s) 235
BalI TGGCCA 1 cut(s) 971
BanI GGYRCC 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 1 cut(s) 447
BccI CCATC 4 cut(s) 97, 187, 961, 1066
BciT130I CCWGG 1 cut(s) 24
BclI TGATCA 1 cut(s) 877
BcnI CCSGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 1 cut(s) 692
BfoI RGCGCY 1 cut(s) 790
BfrI CTTAAG 1 cut(s) 791
BglII AGATCT 1 cut(s) 76
BisI GCNGC 1 cut(s) 436
BlpI GCTNAGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 437
Bme1390I CCNGG 2 cut(s) 24, 315
Bme18I GGWCC 3 cut(s) 564, 604, 1074
BmgT120I GGNCC 5 cut(s) 278, 536, 564, 604, 1074
BmiI GGNNCC 5 cut(s) 537, 565, 592, 605, 788
BmrFI CCNGG 2 cut(s) 24, 315
BmsI GCATC 4 cut(s) 136, 330, 514, 789
BpmI CTGGAG 2 cut(s) 138, 930
Bpu10I CCTNAGC 1 cut(s) 344
Bpu1102I GCTNAGC 1 cut(s) 302
BpuEI CTTGAG 2 cut(s) 508, 1115
BpuMI CCSGG 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 787
BsaJI CCNNGG 1 cut(s) 314
BsaXI ACNNNNNCTCC 2 cut(s) 439, 469
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 600, 601
Bse1I ACTGG 3 cut(s) 66, 240, 518
Bse21I CCTNAGG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 314
BseGI GGATG 4 cut(s) 179, 342, 804, 972
BseLI CCNNNNNNNGG 3 cut(s) 106, 600, 601
BseMII CTCAG 4 cut(s) 316, 677, 788, 1053
BseNI ACTGG 3 cut(s) 66, 240, 518
BseRI GAGGAG 2 cut(s) 599, 1036
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 1 cut(s) 447
BshFI GGCC 6 cut(s) 280, 451, 538, 915, 971, 1118
BshNI GGYRCC 1 cut(s) 786
BsiHKAI GWGCWC 1 cut(s) 586
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 2 cut(s) 73, 82
BslI CCNNNNNNNGG 3 cut(s) 106, 600, 601
BsmAI GTCTC 1 cut(s) 46
BsmFI GGGAC 2 cut(s) 73, 82
BsmI GAATGC 1 cut(s) 306
BsnI GGCC 6 cut(s) 280, 451, 538, 915, 971, 1118
Bsp1286I GDGCHC 2 cut(s) 235, 586
Bsp1407I TGTACA 1 cut(s) 459
Bsp143I GATC 4 cut(s) 76, 877, 1036, 1090
Bsp1720I GCTNAGC 1 cut(s) 302
BspACI CCGC 1 cut(s) 836
BspANI GGCC 6 cut(s) 280, 451, 538, 915, 971, 1118
BspCNI CTCAG 4 cut(s) 315, 676, 787, 1054
BspLI GGNNCC 5 cut(s) 537, 565, 592, 605, 788
BspPI GGATC 1 cut(s) 1031
BspT107I GGYRCC 1 cut(s) 786
BspTI CTTAAG 1 cut(s) 791
BsrGI TGTACA 1 cut(s) 459
BsrI ACTGG 3 cut(s) 66, 240, 518
BssECI CCNNGG 1 cut(s) 314
BssMI GATC 4 cut(s) 76, 877, 1036, 1090
BssNI GRCGYC 1 cut(s) 787
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 167, 951
Bst6I CTCTTC 2 cut(s) 226, 810
BstACI GRCGYC 1 cut(s) 787
BstAFI CTTAAG 1 cut(s) 791
BstAUI TGTACA 1 cut(s) 459
BstDEI CTNAG 8 cut(s) 251, 282, 302, 344, 663, 774, 815, 1062
BstF5I GGATG 4 cut(s) 179, 342, 804, 972
BstH2I RGCGCY 1 cut(s) 790
BstHHI GCGC 2 cut(s) 714, 789
BstKTI GATC 4 cut(s) 79, 880, 1039, 1093
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 4 cut(s) 76, 877, 1036, 1090
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 2 cut(s) 199, 466
BstSCI CCNGG 2 cut(s) 22, 313
BstSLI GKGCMC 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 447
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
Bsu36I CCTNAGG 1 cut(s) 282
BsuRI GGCC 6 cut(s) 280, 451, 538, 915, 971, 1118
BtsCI GGATG 4 cut(s) 179, 342, 804, 972
BtsI GCAGTG 1 cut(s) 445
BtsIMutI CAGTG 4 cut(s) 59, 233, 391, 445
CfoI GCGC 2 cut(s) 714, 789
Cfr13I GGNCC 5 cut(s) 278, 536, 564, 604, 1074
Csp6I GTAC 3 cut(s) 460, 517, 812
CviAII CATG 5 cut(s) 46, 196, 463, 868, 881
CviQI GTAC 3 cut(s) 460, 517, 812
DdeI CTNAG 8 cut(s) 251, 282, 302, 344, 663, 774, 815, 1062
DinI GGCGCC 1 cut(s) 788
DpnI GATC 4 cut(s) 78, 879, 1038, 1092
DpnII GATC 4 cut(s) 76, 877, 1036, 1090
DraIII CACNNNGTG 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 969
Eam1104I CTCTTC 2 cut(s) 226, 810
EarI CTCTTC 2 cut(s) 226, 810
Eco147I AGGCCT 2 cut(s) 451, 915
Eco47I GGWCC 3 cut(s) 564, 604, 1074
Eco57I CTGAAG 1 cut(s) 207
Eco81I CCTNAGG 1 cut(s) 282
EcoO109I RGGNCCY 2 cut(s) 278, 604
EcoRII CCWGG 1 cut(s) 22
EgeI GGCGCC 1 cut(s) 788
EheI GGCGCC 1 cut(s) 788
FaeI CATG 5 cut(s) 49, 199, 466, 871, 884
FalI AAGNNNNNCTT 2 cut(s) 622, 654
FaqI GGGAC 2 cut(s) 73, 82
FatI CATG 5 cut(s) 45, 195, 462, 867, 880
FauI CCCGC 1 cut(s) 829
FbaI TGATCA 1 cut(s) 877
Fnu4HI GCNGC 1 cut(s) 436
FokI GGATG 4 cut(s) 166, 349, 811, 979
Fsp4HI GCNGC 1 cut(s) 436
FspBI CTAG 1 cut(s) 692
FspI TGCGCA 1 cut(s) 713
GlaI GCGC 2 cut(s) 713, 788
GluI GCNGC 1 cut(s) 436
GsuI CTGGAG 2 cut(s) 138, 930
HaeII RGCGCY 1 cut(s) 790
HaeIII GGCC 6 cut(s) 280, 451, 538, 915, 971, 1118
HapII CCGG 1 cut(s) 314
HhaI GCGC 2 cut(s) 714, 789
Hin1I GRCGYC 1 cut(s) 787
Hin1II CATG 5 cut(s) 49, 199, 466, 871, 884
Hin6I GCGC 2 cut(s) 712, 787
HinP1I GCGC 2 cut(s) 712, 787
HindIII AAGCTT 1 cut(s) 202
HinfI GANTC 7 cut(s) 243, 350, 401, 661, 889, 979, 1097
HpaII CCGG 1 cut(s) 314
HphI GGTGA 4 cut(s) 167, 203, 260, 1097
Hpy166II GTNNAC 5 cut(s) 212, 268, 420, 519, 734
Hpy188I TCNGA 5 cut(s) 777, 984, 1063, 1102, 1139
Hpy188III TCNNGA 8 cut(s) 398, 405, 625, 658, 684, 931, 1094, 1109
Hpy8I GTNNAC 5 cut(s) 212, 268, 420, 519, 734
HpyAV CCTTC 2 cut(s) 494, 839
HpyCH4III ACNGT 2 cut(s) 167, 951
HpyCH4V TGCA 5 cut(s) 199, 361, 435, 527, 1010
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 8 cut(s) 251, 282, 302, 344, 663, 774, 815, 1062
Hsp92I GRCGYC 1 cut(s) 787
Hsp92II CATG 5 cut(s) 49, 199, 466, 871, 884
HspAI GCGC 2 cut(s) 712, 787
KasI GGCGCC 1 cut(s) 786
Ksp22I TGATCA 1 cut(s) 877
Kzo9I GATC 4 cut(s) 76, 877, 1036, 1090
LmnI GCTCC 2 cut(s) 596, 984
Lsp1109I GCAGC 1 cut(s) 447
LweI GCATC 4 cut(s) 136, 330, 514, 789
MaeI CTAG 1 cut(s) 692
MaeIII GTNAC 7 cut(s) 136, 154, 173, 191, 471, 632, 666
MalI GATC 4 cut(s) 78, 879, 1038, 1092
MboI GATC 4 cut(s) 76, 877, 1036, 1090
MboII GAAGA 3 cut(s) 213, 797, 1046
MfeI CAATTG 2 cut(s) 141, 1005
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 2 cut(s) 235, 586
MlsI TGGCCA 1 cut(s) 971
MluCI AATT 6 cut(s) 30, 71, 141, 718, 996, 1005
MluNI TGGCCA 1 cut(s) 971
Mly113I GGCGCC 1 cut(s) 787
MlyI GAGTC 2 cut(s) 655, 1106
Mox20I TGGCCA 1 cut(s) 971
MroXI GAANNNNTTC 1 cut(s) 393
MscI TGGCCA 1 cut(s) 971
MseI TTAA 2 cut(s) 792, 1022
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 971
MspCI CTTAAG 1 cut(s) 791
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 2 cut(s) 24, 315
MunI CAATTG 2 cut(s) 141, 1005
Mva1269I GAATGC 1 cut(s) 306
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 122
NarI GGCGCC 1 cut(s) 787
NciI CCSGG 1 cut(s) 315
NdeII GATC 4 cut(s) 76, 877, 1036, 1090
NlaIII CATG 5 cut(s) 49, 199, 466, 871, 884
NlaIV GGNNCC 5 cut(s) 537, 565, 592, 605, 788
NmuCI GTSAC 4 cut(s) 136, 173, 191, 471
NsbI TGCGCA 1 cut(s) 713
NspI RCATGY 2 cut(s) 199, 466
PceI AGGCCT 2 cut(s) 451, 915
PciI ACATGT 1 cut(s) 462
PctI GAATGC 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 5 cut(s) 243, 350, 401, 889, 979
PkrI GCNGC 1 cut(s) 437
PleI GAGTC 2 cut(s) 655, 1105
PluTI GGCGCC 1 cut(s) 790
PpsI GAGTC 2 cut(s) 655, 1105
PpuMI RGGWCCY 1 cut(s) 604
PscI ACATGT 1 cut(s) 462
Psp5II RGGWCCY 1 cut(s) 604
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 5 cut(s) 537, 565, 592, 605, 788
PspPI GGNCC 5 cut(s) 278, 536, 564, 604, 1074
PspPPI RGGWCCY 1 cut(s) 604
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 3 cut(s) 461, 518, 813
RsaNI GTAC 3 cut(s) 460, 517, 812
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 2 cut(s) 792, 1022
SatI GCNGC 1 cut(s) 436
Sau3AI GATC 4 cut(s) 76, 877, 1036, 1090
Sau96I GGNCC 5 cut(s) 278, 536, 564, 604, 1074
SchI GAGTC 2 cut(s) 655, 1106
ScrFI CCNGG 2 cut(s) 24, 315
SduI GDGCHC 2 cut(s) 235, 586
SetI ASST 9 cut(s) 28, 206, 221, 273, 368, 488, 558, 1030, 1087
SfaNI GCATC 4 cut(s) 136, 330, 514, 789
SfoI GGCGCC 1 cut(s) 788
SinI GGWCC 3 cut(s) 564, 604, 1074
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 3 cut(s) 487, 791, 1094
SmoI CTYRAG 3 cut(s) 487, 791, 1094
Sse9I AATT 6 cut(s) 30, 71, 141, 718, 996, 1005
SseBI AGGCCT 2 cut(s) 451, 915
SsiI CCGC 1 cut(s) 836
SspDI GGCGCC 1 cut(s) 786
SspMI CTAG 1 cut(s) 692
StuI AGGCCT 2 cut(s) 451, 915
StyD4I CCNGG 2 cut(s) 22, 313
TaaI ACNGT 2 cut(s) 167, 951
TaqI TCGA 1 cut(s) 1030
TasI AATT 6 cut(s) 30, 71, 141, 718, 996, 1005
TatI WGTACW 2 cut(s) 459, 811
TfiI GAWTC 5 cut(s) 243, 350, 401, 889, 979
Tru1I TTAA 2 cut(s) 792, 1022
Tru9I TTAA 2 cut(s) 792, 1022
TscAI CASTG 4 cut(s) 66, 240, 391, 445
TseFI GTSAC 4 cut(s) 136, 173, 191, 471
TseI GCWGC 1 cut(s) 435
Tsp45I GTSAC 4 cut(s) 136, 173, 191, 471
TspDTI ATGAA 1 cut(s) 777
TspGWI ACGGA 3 cut(s) 485, 632, 958
TspRI CASTG 4 cut(s) 66, 240, 391, 445
Vha464I CTTAAG 1 cut(s) 791
VpaK11BI GGWCC 3 cut(s) 564, 604, 1074
XapI RAATTY 2 cut(s) 718, 996
XceI RCATGY 2 cut(s) 199, 466
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.