Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006493

Physical Location & Seq

Genomic Coordinates Forward (+)

15718845 .. 15722809

Gene Structure 3965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00012850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCTTGTGCTATCACTGGACAAGAAATTAGATCTTACAATGTCCCTGTTGTCCCTGATGGTGGGGAGTGCTGGAGTAGCAATAGCAGATGTGACAATTGATGCTTGTGTTACAGAAAACAGTATTAGTCACCCATCCCTTGCTGGTGACATGCAAAGCTTGTGTGGACTGACCTCTTCAGTAGGGGCACTGGTGGGATTCTCACTTAGTGGATTTTTCGTTCACCTATTAGGGCCTAAGGGTGTGTTTGGGTTGCTCAGCATTCCTCCGGGGCTGGTCATTTTCGTTGGGATGATGCTTAGGGAATCCCATTTGCACAGCTTTTCTCATAGACGGGTCAGTGAAAAGTTTCTGGATTCTGGAAAGGCTATGTGGACAACCCTAAAATGTAGCAGTGTATGGAGGCCTTGTTTGTACATGTATTTGTCACTTGCTTTGAGCTTGAGTGTCCGTGAAGGAATGTTTTACTGGTATACAGACGCAAAGGGGGGCCATCTTTCTCAAAGGAGGTTGTTGGGTCCATATTCTCTATTGGTGCTCTTGGCTCCCTTTTTGGGGTTCTCCTCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

190

Amino Acids

20.55

Weight (kDa)

8.73

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BT1	PF03092	7 - 168	2e-28	BT1 family
MFS_1	PF07690	14 - 184	9.5e-06	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79710 AT1G79710 AT1G79710
fragaria_vesca	FvH4_6g28210 FvH4_6g28210
malus_domestica	MD09G1228300.v1.1 MD17G1226600.v1.1
prunus_persica	Prupe.3G104000_v2.0.a1 Prupe.3G104000_v2.0.a1
pyrus_communis	pycom09g14730 pycom17g23000
rosa_chinensis	RchiOBHm_Chr2g0132271
rosa_laevigata	RLG00000019242
rosa_multiflora	Rmu_co8174094.1_g000001 Rmu_sc0002403.1_g000007
rosa_roxburghii	Rroxscaffold_1G00012850 Rroxscaffold_2G00102370 Rroxscaffold_2G00112210 Rroxscaffold_3G00267220 Rroxscaffold_3G00267230
rosa_rugosa	Rorug02G0303300
rosa_samantha	Rh2AG356300 Rh2BG362700 Rh2CG339800 Rh2DG379600
rosa_wichuraiana	Rw2G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	473
AcuI	CTGAAG	1 cut(s)	162
AdeI	CACNNNGTG	1 cut(s)	209
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	3 cut(s)	61, 554, 555
AflIII	ACRYGT	1 cut(s)	417
AloI	GAACNNNNNNTCC	2 cut(s)	204, 236
AluBI	AGCT	3 cut(s)	159, 321, 441
AluI	AGCT	3 cut(s)	159, 321, 441
Alw21I	GWGCWC	1 cut(s)	540
AoxI	GGCC	3 cut(s)	233, 404, 490
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	3 cut(s)	233, 490, 518
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	3 cut(s)	122, 158, 215
AvaII	GGWCC	1 cut(s)	518
AxyI	CCTNAGG	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	540
BccI	CCATC	3 cut(s)	52, 142, 501
BcnI	CCSGG	1 cut(s)	270
BglII	AGATCT	1 cut(s)	31
BlpI	GCTNAGC	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	3 cut(s)	233, 490, 518
BmiI	GGNNCC	3 cut(s)	491, 519, 546
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	91, 285
BpmI	CTGGAG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	299
Bpu1102I	GCTNAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	463
BpuMI	CCSGG	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 554, 555
Bse1I	ACTGG	3 cut(s)	21, 195, 473
Bse21I	CCTNAGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	2 cut(s)	134, 297
BseLI	CCNNNNNNNGG	3 cut(s)	61, 554, 555
BseMII	CTCAG	1 cut(s)	271
BseNI	ACTGG	3 cut(s)	21, 195, 473
BseRI	GAGGAG	1 cut(s)	553
BseSI	GKGCMC	1 cut(s)	190
BshFI	GGCC	3 cut(s)	235, 406, 492
BsiHKAI	GWGCWC	1 cut(s)	540
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	2 cut(s)	28, 37
BslI	CCNNNNNNNGG	3 cut(s)	61, 554, 555
BsmFI	GGGAC	2 cut(s)	28, 37
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	3 cut(s)	235, 406, 492
Bsp1286I	GDGCHC	2 cut(s)	190, 540
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	1 cut(s)	31
Bsp1720I	GCTNAGC	1 cut(s)	257
BspANI	GGCC	3 cut(s)	235, 406, 492
BspCNI	CTCAG	1 cut(s)	270
BspLI	GGNNCC	3 cut(s)	491, 519, 546
BsrGI	TGTACA	1 cut(s)	414
BsrI	ACTGG	3 cut(s)	21, 195, 473
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	1 cut(s)	31
BssNAI	GTATAC	1 cut(s)	474
Bst1107I	GTATAC	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	181
BstAUI	TGTACA	1 cut(s)	414
BstDEI	CTNAG	4 cut(s)	206, 237, 257, 299
BstF5I	GGATG	2 cut(s)	134, 297
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNSI	RCATGY	2 cut(s)	154, 421
BstSCI	CCNGG	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BstZ17I	GTATAC	1 cut(s)	474
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	235, 406, 492
BtsCI	GGATG	2 cut(s)	134, 297
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	4 cut(s)	14, 188, 346, 400
Cfr13I	GGNCC	3 cut(s)	233, 490, 518
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	2 cut(s)	151, 418
CviJI	RGCY	9 cut(s)	159, 235, 274, 321, 368, 406, 441, 492, 545
CviKI_1	RGCY	9 cut(s)	159, 235, 274, 321, 368, 406, 441, 492, 545
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	4 cut(s)	206, 237, 257, 299
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
DraIII	CACNNNGTG	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Eco147I	AGGCCT	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	162
Eco81I	CCTNAGG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	233
FaeI	CATG	2 cut(s)	154, 421
FaiI	YATR	7 cut(s)	152, 330, 371, 400, 419, 474, 523
FaqI	GGGAC	2 cut(s)	28, 37
FatI	CATG	2 cut(s)	150, 417
FblI	GTMKAC	1 cut(s)	473
FokI	GGATG	2 cut(s)	121, 304
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	235, 406, 492
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	1 cut(s)	488
Hin1II	CATG	2 cut(s)	154, 421
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	3 cut(s)	198, 305, 356
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	3 cut(s)	122, 158, 215
Hpy166II	GTNNAC	4 cut(s)	167, 223, 375, 474
Hpy188III	TCNNGA	2 cut(s)	353, 360
Hpy8I	GTNNAC	4 cut(s)	167, 223, 375, 474
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	154, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	4 cut(s)	206, 237, 257, 299
Hsp92II	CATG	2 cut(s)	154, 421
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	550
LweI	GCATC	2 cut(s)	91, 285
MaeIII	GTNAC	5 cut(s)	91, 109, 128, 146, 426
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	168
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	190, 540
MluCI	AATT	2 cut(s)	26, 96
MnlI	CCTC	4 cut(s)	184, 276, 396, 501
MroXI	GAANNNNTTC	1 cut(s)	348
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	270
MunI	CAATTG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	2 cut(s)	154, 421
NlaIV	GGNNCC	3 cut(s)	491, 519, 546
NmuCI	GTSAC	4 cut(s)	91, 128, 146, 426
NspI	RCATGY	2 cut(s)	154, 421
PceI	AGGCCT	1 cut(s)	406
PciI	ACATGT	1 cut(s)	417
PctI	GAATGC	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	3 cut(s)	198, 305, 356
PscI	ACATGT	1 cut(s)	417
PspN4I	GGNNCC	3 cut(s)	491, 519, 546
PspPI	GGNCC	3 cut(s)	233, 490, 518
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	3 cut(s)	233, 490, 518
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	2 cut(s)	190, 540
SetI	ASST	7 cut(s)	161, 176, 228, 323, 443, 512, 572
SfaNI	GCATC	2 cut(s)	91, 285
SinI	GGWCC	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
Sse9I	AATT	2 cut(s)	26, 96
SseBI	AGGCCT	1 cut(s)	406
StuI	AGGCCT	1 cut(s)	406
StyD4I	CCNGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	122
TasI	AATT	2 cut(s)	26, 96
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	3 cut(s)	198, 305, 356
TscAI	CASTG	4 cut(s)	21, 195, 346, 400
TseFI	GTSAC	4 cut(s)	91, 128, 146, 426
Tsp45I	GTSAC	4 cut(s)	91, 128, 146, 426
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	4 cut(s)	21, 195, 346, 400
VpaK11BI	GGWCC	1 cut(s)	518
XceI	RCATGY	2 cut(s)	154, 421
XmiI	GTMKAC	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.