Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006493

Physical Location & Seq

Genomic Coordinates Forward (+)

24503259 .. 24508031

Gene Structure 4773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCTTGTGCTATCATTGGACAAGAAATTAGATCTTACAATGTCCCTGTTGTCCCTGATGGTGGGGAGTGCTGGAGTAGCAATAGCAGATGTGACAATTGATGCTTGTGTTACAGAAAACAGTATTAGTCACCCATCCCTTGCTGGTGACATGCAAAGCTTGTGTGGACTGACCTCTTCAGTAGGGGCACTGGTGGGATTCTCACTTAGTGGATTTTTCGTTCACCTATTAGGGCCTAAGGGTGTGTTTGGGTTGCTCAGCATTCCTCCGGGGCTGGTCATTTTCGTTGGGATGATGCTTAGGGAATCCCATTTGCACAGCTTTTCTCATAGACGGGTCAGTGAAAAGTTTCTGGATTCTGGAAAGGCTATGTGGACAACCCTAAAATGCAGCAGTGTATGGAGGCCTTGTTTGTACATGTATTTGTCACTTGCTTTGAGCTTGAGTGTCCGTGAAGGAATGTTTTACTGGTATACAGACGCAAAGGGGGGCCATCTTTCTCAAAGGAGGTTGTTGGGGTCCATATTCTCTATTGGTGCTCTTGGCTCCCTTTCTGGGGTTCTCCTCTACCAAAACTTCTTGAAAAGTTACCCTTTCCGTGATGTGCTTTTCTGGACTCAGTTACTCTATGGCATATCAGGATTGCTAGACTTGGTATTCGTGTTTCGCATAAATTTGAAACTCGGTTTACCAGACTATCTTTTTGTTGTGATTGATGAAGCAGTTTCTCAGATGATTGGGCGTCTTAAGTGGATGCCTCTTCTTGTACTTAGTTCAAAACTCTGCCCTGCGGGGTATTCCAGTGCAACAAAGCAGCACAGACTGTGGCTATTCCAGTGCATTGGACTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

284

Amino Acids

31.26

Weight (kDa)

9.14

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BT1	PF03092	7 - 268	6.6e-66	BT1 family
MFS_1	PF07690	15 - 223	2.5e-06	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79710 AT1G79710 AT1G79710
fragaria_vesca	FvH4_6g28210 FvH4_6g28210
malus_domestica	MD09G1228300.v1.1 MD17G1226600.v1.1
prunus_persica	Prupe.3G104000_v2.0.a1 Prupe.3G104000_v2.0.a1
pyrus_communis	pycom09g14730 pycom17g23000
rosa_chinensis	RchiOBHm_Chr2g0132271
rosa_laevigata	RLG00000019242
rosa_multiflora	Rmu_co8174094.1_g000001 Rmu_sc0002403.1_g000007
rosa_roxburghii	Rroxscaffold_1G00012850 Rroxscaffold_2G00102370 Rroxscaffold_2G00112210 Rroxscaffold_3G00267220 Rroxscaffold_3G00267230
rosa_rugosa	Rorug02G0303300
rosa_samantha	Rh2AG356300 Rh2BG362700 Rh2CG339800 Rh2DG379600
rosa_wichuraiana	Rw2G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	473
AciI	CCGC	1 cut(s)	791
AcsI	RAATTY	1 cut(s)	673
AcuI	CTGAAG	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	742
AdeI	CACNNNGTG	1 cut(s)	209
AfaI	GTAC	2 cut(s)	416, 768
AfiI	CCNNNNNNNGG	3 cut(s)	61, 555, 556
AflII	CTTAAG	1 cut(s)	746
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	3 cut(s)	583, 679, 777
AloI	GAACNNNNNNTCC	2 cut(s)	204, 236
AluBI	AGCT	3 cut(s)	159, 321, 441
AluI	AGCT	3 cut(s)	159, 321, 441
Alw21I	GWGCWC	1 cut(s)	541
AoxI	GGCC	3 cut(s)	233, 404, 490
ApeKI	GCWGC	2 cut(s)	390, 814
ApoI	RAATTY	1 cut(s)	673
ArsI	GACNNNNNNTTYG	4 cut(s)	641, 673, 686, 718
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	3 cut(s)	233, 490, 519
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	3 cut(s)	122, 158, 215
AvaII	GGWCC	1 cut(s)	519
AxyI	CCTNAGG	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	2 cut(s)	402, 826
BccI	CCATC	3 cut(s)	52, 142, 501
BcgI	CGANNNNNNTGC	1 cut(s)	829
BcnI	CCSGG	1 cut(s)	270
BfaI	CTAG	1 cut(s)	647
BfrI	CTTAAG	1 cut(s)	746
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	2 cut(s)	391, 815
BlpI	GCTNAGC	1 cut(s)	257
BlsI	GCNGC	2 cut(s)	392, 816
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	519
BmgT120I	GGNCC	3 cut(s)	233, 490, 519
BmiI	GGNNCC	3 cut(s)	491, 520, 547
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	3 cut(s)	91, 285, 744
BpmI	CTGGAG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	299
Bpu1102I	GCTNAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	463
BpuMI	CCSGG	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	742
BsaJI	CCNNGG	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 555, 556
Bse1I	ACTGG	4 cut(s)	195, 473, 801, 835
Bse21I	CCTNAGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	3 cut(s)	134, 297, 759
BseLI	CCNNNNNNNGG	3 cut(s)	61, 555, 556
BseMII	CTCAG	3 cut(s)	271, 632, 743
BseNI	ACTGG	4 cut(s)	195, 473, 801, 835
BseRI	GAGGAG	1 cut(s)	554
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	402, 826
BshFI	GGCC	3 cut(s)	235, 406, 492
BsiHKAI	GWGCWC	1 cut(s)	541
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	2 cut(s)	28, 37
BslI	CCNNNNNNNGG	3 cut(s)	61, 555, 556
BsmFI	GGGAC	2 cut(s)	28, 37
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	3 cut(s)	235, 406, 492
Bsp1286I	GDGCHC	2 cut(s)	190, 541
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	1 cut(s)	31
Bsp1720I	GCTNAGC	1 cut(s)	257
BspACI	CCGC	1 cut(s)	791
BspANI	GGCC	3 cut(s)	235, 406, 492
BspCNI	CTCAG	3 cut(s)	270, 631, 742
BspLI	GGNNCC	3 cut(s)	491, 520, 547
BspTI	CTTAAG	1 cut(s)	746
BsrGI	TGTACA	1 cut(s)	414
BsrI	ACTGG	4 cut(s)	195, 473, 801, 835
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	1 cut(s)	31
BssNAI	GTATAC	1 cut(s)	474
BssNI	GRCGYC	1 cut(s)	742
Bst1107I	GTATAC	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	122, 825
Bst6I	CTCTTC	2 cut(s)	181, 765
BstACI	GRCGYC	1 cut(s)	742
BstAFI	CTTAAG	1 cut(s)	746
BstAUI	TGTACA	1 cut(s)	414
BstDEI	CTNAG	7 cut(s)	206, 237, 257, 299, 618, 729, 770
BstF5I	GGATG	3 cut(s)	134, 297, 759
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNSI	RCATGY	2 cut(s)	154, 421
BstSCI	CCNGG	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	190
BstV1I	GCAGC	2 cut(s)	402, 826
BstX2I	RGATCY	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	842
BstYI	RGATCY	1 cut(s)	31
BstZ17I	GTATAC	1 cut(s)	474
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	235, 406, 492
BtsCI	GGATG	3 cut(s)	134, 297, 759
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	5 cut(s)	188, 346, 400, 808, 842
Cfr13I	GGNCC	3 cut(s)	233, 490, 519
CseI	GACGC	2 cut(s)	488, 731
Csp6I	GTAC	2 cut(s)	415, 767
CviAII	CATG	2 cut(s)	151, 418
CviQI	GTAC	2 cut(s)	415, 767
DdeI	CTNAG	7 cut(s)	206, 237, 257, 299, 618, 729, 770
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
DraIII	CACNNNGTG	1 cut(s)	209
Eam1104I	CTCTTC	2 cut(s)	181, 765
EarI	CTCTTC	2 cut(s)	181, 765
Eco147I	AGGCCT	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	519
Eco57I	CTGAAG	1 cut(s)	162
Eco81I	CCTNAGG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	233
FaeI	CATG	2 cut(s)	154, 421
FalI	AAGNNNNNCTT	2 cut(s)	577, 609
FaqI	GGGAC	2 cut(s)	28, 37
FatI	CATG	2 cut(s)	150, 417
FauI	CCCGC	1 cut(s)	784
FblI	GTMKAC	1 cut(s)	473
Fnu4HI	GCNGC	2 cut(s)	391, 815
FokI	GGATG	3 cut(s)	121, 304, 766
Fsp4HI	GCNGC	2 cut(s)	391, 815
FspBI	CTAG	1 cut(s)	647
GluI	GCNGC	2 cut(s)	391, 815
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	235, 406, 492
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	2 cut(s)	488, 731
Hin1I	GRCGYC	1 cut(s)	742
Hin1II	CATG	2 cut(s)	154, 421
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	5 cut(s)	198, 305, 356, 616, 846
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	3 cut(s)	122, 158, 215
Hpy166II	GTNNAC	5 cut(s)	167, 223, 375, 474, 689
Hpy188I	TCNGA	1 cut(s)	732
Hpy188III	TCNNGA	5 cut(s)	353, 360, 580, 613, 639
Hpy8I	GTNNAC	5 cut(s)	167, 223, 375, 474, 689
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	2 cut(s)	122, 825
HpyCH4V	TGCA	5 cut(s)	154, 316, 390, 806, 840
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	7 cut(s)	206, 237, 257, 299, 618, 729, 770
Hsp92I	GRCGYC	1 cut(s)	742
Hsp92II	CATG	2 cut(s)	154, 421
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	2 cut(s)	402, 826
LweI	GCATC	3 cut(s)	91, 285, 744
MaeI	CTAG	1 cut(s)	647
MaeIII	GTNAC	7 cut(s)	91, 109, 128, 146, 426, 587, 621
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	2 cut(s)	168, 752
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	190, 541
MluCI	AATT	3 cut(s)	26, 96, 673
MlyI	GAGTC	2 cut(s)	610, 840
MnlI	CCTC	6 cut(s)	184, 276, 396, 501, 575, 768
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	2 cut(s)	747, 853
MspCI	CTTAAG	1 cut(s)	746
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	270
MunI	CAATTG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	2 cut(s)	154, 421
NlaIV	GGNNCC	3 cut(s)	491, 520, 547
NmuCI	GTSAC	4 cut(s)	91, 128, 146, 426
NspI	RCATGY	2 cut(s)	154, 421
PceI	AGGCCT	1 cut(s)	406
PciI	ACATGT	1 cut(s)	417
PctI	GAATGC	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	3 cut(s)	198, 305, 356
PkrI	GCNGC	2 cut(s)	392, 816
PleI	GAGTC	2 cut(s)	610, 840
PpsI	GAGTC	2 cut(s)	610, 840
PscI	ACATGT	1 cut(s)	417
PspN4I	GGNNCC	3 cut(s)	491, 520, 547
PspPI	GGNCC	3 cut(s)	233, 490, 519
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	2 cut(s)	416, 768
RsaNI	GTAC	2 cut(s)	415, 767
SaqAI	TTAA	2 cut(s)	747, 853
SatI	GCNGC	2 cut(s)	391, 815
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	3 cut(s)	233, 490, 519
SchI	GAGTC	2 cut(s)	610, 840
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	2 cut(s)	190, 541
SetI	ASST	6 cut(s)	161, 176, 228, 323, 443, 512
SfaNI	GCATC	3 cut(s)	91, 285, 744
SinI	GGWCC	1 cut(s)	519
SmlI	CTYRAG	2 cut(s)	442, 746
SmoI	CTYRAG	2 cut(s)	442, 746
Sse9I	AATT	3 cut(s)	26, 96, 673
SseBI	AGGCCT	1 cut(s)	406
SsiI	CCGC	1 cut(s)	791
SspMI	CTAG	1 cut(s)	647
StuI	AGGCCT	1 cut(s)	406
StyD4I	CCNGG	1 cut(s)	268
TaaI	ACNGT	2 cut(s)	122, 825
TasI	AATT	3 cut(s)	26, 96, 673
TatI	WGTACW	2 cut(s)	414, 766
TfiI	GAWTC	3 cut(s)	198, 305, 356
Tru1I	TTAA	2 cut(s)	747, 853
Tru9I	TTAA	2 cut(s)	747, 853
TscAI	CASTG	5 cut(s)	195, 346, 400, 808, 842
TseFI	GTSAC	4 cut(s)	91, 128, 146, 426
TseI	GCWGC	2 cut(s)	390, 814
Tsp45I	GTSAC	4 cut(s)	91, 128, 146, 426
TspDTI	ATGAA	1 cut(s)	732
TspGWI	ACGGA	2 cut(s)	440, 587
TspRI	CASTG	5 cut(s)	195, 346, 400, 808, 842
Vha464I	CTTAAG	1 cut(s)	746
VpaK11BI	GGWCC	1 cut(s)	519
XapI	RAATTY	1 cut(s)	673
XceI	RCATGY	2 cut(s)	154, 421
XmiI	GTMKAC	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.