Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006493

Physical Location & Seq

Genomic Coordinates Reverse (-)

14476808 .. 14480835

Gene Structure 4028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g14730.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAAATGGAAGCAGAAGAACATGAAAAAGAAAGTCTTCACCCTGAGTCAGAGAACCAAAAGCAGAAAACTCCAGTAAAGAGTGTCCGAGATTTGCTATGGACACCCATAAATTGGTTCAGAATGCTGAGCAGCGAGTTGCAGTGCAGCTTTGTGGTGGGTGTGGTGATTGTGTACGGCATCAGTCAGGGTCTAAGCATGGGACTGAGTAGAATTAGCATACAGTATTACTTGAAAGATGATCAGAAAGTGCAGCCTTCTGAGGCACAAGTCTACTTTGGGATCATCCAAATTCCTTGGATTGTGAAGCCTTTCTGGGGCCTTCTCACTGACACTCTTCCTGTTCTTGGCTACCGCCGAAAACCATACTTTGTTTTTGCTGGTTTACTTGGGGTGATCTCCATGCTTGTGTTATCACTAGACAAGAATTTAAATCTGACAATGTCCTTGCTGGCTCTAATGGCGGGGAGTGCTGGAGTTGCAATTGCCGATGTAACAATTGATGCCTGTGTTACACAGAACAGTATAAGACATCCATCCCTTGCCGGTGACATGCAGAGCTTGTGTGGACTGAGCTCTTCGGTCGGGGCACTGGTGGGTTTTTCACTTAGTGGGTTTCTTGTTCACCTTGTGGGCCCTAAGGGTGTGTTTGGGTTGCTCAGCATCCCTCCGGGGCTTGTCATTTTGGTTGGGATAATGCATAGAGAATCTTGTGCGCGCAACTTTGCTTATAAACAGGTCAGTGTAAAGTTACTGGATGCTGGCAAGGTTATGTGGACAACATTAAAATGCGGTAGTGTATGGAGGCCTTGCTTATACATGTACTTGTCACTTGCTCTGGCCTTGAATGTTCGTGAAGGAATGTTTTATTGGTACACTGATGCAAAGGGGGGTCCGTCTTTCTCCAAGGAGGTTGTCGGATCCATATTCTCTATTGGTGCTGTTGGTTCCCTTTTTGGGGTCCTTCTCTACCAGAATTTTTTAAAAAGTTACCCTTTCAGGGATGTTCTGTTCTGGACTCAGTTGCTCTATGGTGCTTCAGGAATGCTAGACTTGGGATGCTGTCATCTACTTGGGCTGGAGGCCTCTTACTCCACATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

368

Amino Acids

40.35

Weight (kDa)

8.04

Isoelectric Point (pI)

25.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79710 AT1G79710 AT1G79710
fragaria_vesca	FvH4_6g28210 FvH4_6g28210
malus_domestica	MD09G1228300.v1.1 MD17G1226600.v1.1
prunus_persica	Prupe.3G104000_v2.0.a1 Prupe.3G104000_v2.0.a1
pyrus_communis	pycom09g14730 pycom17g23000
rosa_chinensis	RchiOBHm_Chr2g0132271
rosa_laevigata	RLG00000019242
rosa_multiflora	Rmu_co8174094.1_g000001 Rmu_sc0002403.1_g000007
rosa_roxburghii	Rroxscaffold_1G00012850 Rroxscaffold_2G00102370 Rroxscaffold_2G00112210 Rroxscaffold_3G00267220 Rroxscaffold_3G00267230
rosa_rugosa	Rorug02G0303300
rosa_samantha	Rh2AG356300 Rh2BG362700 Rh2CG339800 Rh2DG379600
rosa_wichuraiana	Rw2G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	732
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	718
AciI	CCGC	3 cut(s)	355, 464, 792
AclWI	GGATC	3 cut(s)	290, 915, 928
AcsI	RAATTY	3 cut(s)	291, 427, 976
AcuI	CTGAAG	1 cut(s)	1023
AdeI	CACNNNGTG	2 cut(s)	611, 631
AfaI	GTAC	3 cut(s)	176, 824, 875
AfiI	CCNNNNNNNGG	6 cut(s)	114, 317, 347, 957, 958, 1000
AflIII	ACRYGT	1 cut(s)	819
AgsI	TTSAA	2 cut(s)	235, 847
AjuI	GAANNNNNNNTTGG	2 cut(s)	853, 885
AloI	GAACNNNNNNTCC	2 cut(s)	995, 1027
AluBI	AGCT	3 cut(s)	150, 561, 576
AluI	AGCT	3 cut(s)	150, 561, 576
Alw21I	GWGCWC	1 cut(s)	578
AlwI	GGATC	3 cut(s)	290, 915, 928
AoxI	GGCC	5 cut(s)	319, 634, 806, 840, 1083
ApaI	GGGCCC	1 cut(s)	638
ApeKI	GCWGC	3 cut(s)	132, 147, 253
ApoI	RAATTY	3 cut(s)	291, 427, 976
Asp700I	GAANNNNTTC	2 cut(s)	36, 311
AspLEI	GCGC	2 cut(s)	718, 720
AspS9I	GGNCC	5 cut(s)	319, 634, 635, 893, 961
AsuC2I	CCSGG	1 cut(s)	672
AsuHPI	GGTGA	5 cut(s)	32, 178, 406, 560, 617
AvaII	GGWCC	2 cut(s)	893, 961
AxyI	CCTNAGG	1 cut(s)	639
BaeGI	GKGCMC	2 cut(s)	592, 638
BamHI	GGATCC	1 cut(s)	920
BanII	GRGCYC	2 cut(s)	578, 638
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	578
BbvI	GCAGC	3 cut(s)	144, 159, 265
BccI	CCATC	1 cut(s)	544
BceAI	ACGGC	1 cut(s)	193
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	672
BfaI	CTAG	2 cut(s)	419, 1049
BisI	GCNGC	3 cut(s)	133, 148, 254
BlpI	GCTNAGC	2 cut(s)	128, 659
BlsI	GCNGC	3 cut(s)	134, 149, 255
Bme1390I	CCNGG	1 cut(s)	672
Bme18I	GGWCC	2 cut(s)	893, 961
BmgT120I	GGNCC	5 cut(s)	319, 634, 635, 893, 961
BmiI	GGNNCC	6 cut(s)	320, 636, 894, 922, 949, 962
BmrFI	CCNGG	1 cut(s)	672
BmsI	GCATC	6 cut(s)	189, 493, 672, 748, 871, 1049
BpiI	GAAGAC	1 cut(s)	29
BpmI	CTGGAG	3 cut(s)	57, 495, 1100
Bpu1102I	GCTNAGC	2 cut(s)	128, 659
BpuMI	CCSGG	1 cut(s)	672
BsaJI	CCNNGG	3 cut(s)	296, 671, 906
Bsc4I	CCNNNNNNNGG	6 cut(s)	114, 317, 347, 957, 958, 1000
Bse118I	RCCGGY	1 cut(s)	545
Bse1I	ACTGG	3 cut(s)	74, 597, 759
Bse21I	CCTNAGG	1 cut(s)	639
BseDI	CCNNGG	3 cut(s)	296, 671, 906
BseGI	GGATG	7 cut(s)	285, 532, 536, 663, 763, 1009, 1064
BseLI	CCNNNNNNNGG	6 cut(s)	114, 317, 347, 957, 958, 1000
BseMII	CTCAG	7 cut(s)	36, 119, 197, 252, 563, 673, 1034
BseNI	ACTGG	3 cut(s)	74, 597, 759
BsePI	GCGCGC	1 cut(s)	716
BseSI	GKGCMC	2 cut(s)	592, 638
BseXI	GCAGC	3 cut(s)	144, 159, 265
BsgI	GTGCAG	2 cut(s)	166, 272
Bsh1236I	CGCG	1 cut(s)	718
Bsh1285I	CGRYCG	1 cut(s)	585
BshFI	GGCC	5 cut(s)	321, 636, 808, 842, 1085
BsiEI	CGRYCG	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	578
BsiSI	CCGG	2 cut(s)	546, 671
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	6 cut(s)	114, 317, 347, 957, 958, 1000
BsmFI	GGGAC	1 cut(s)	216
BsmI	GAATGC	2 cut(s)	129, 1050
BsnI	GGCC	5 cut(s)	321, 636, 808, 842, 1085
Bsp120I	GGGCCC	1 cut(s)	634
Bsp1286I	GDGCHC	3 cut(s)	578, 592, 638
Bsp143I	GATC	4 cut(s)	241, 282, 396, 920
Bsp1720I	GCTNAGC	2 cut(s)	128, 659
BspACI	CCGC	3 cut(s)	355, 464, 792
BspANI	GGCC	5 cut(s)	321, 636, 808, 842, 1085
BspCNI	CTCAG	7 cut(s)	37, 120, 198, 253, 564, 672, 1033
BspFNI	CGCG	1 cut(s)	718
BspLI	GGNNCC	6 cut(s)	320, 636, 894, 922, 949, 962
BspPI	GGATC	3 cut(s)	290, 915, 928
BspQI	GCTCTTC	1 cut(s)	583
BsrFI	RCCGGY	1 cut(s)	545
BsrI	ACTGG	3 cut(s)	74, 597, 759
BssAI	RCCGGY	1 cut(s)	545
BssECI	CCNNGG	3 cut(s)	296, 671, 906
BssHII	GCGCGC	1 cut(s)	716
BssMI	GATC	4 cut(s)	241, 282, 396, 920
BssT1I	CCWWGG	2 cut(s)	296, 906
Bst4CI	ACNGT	2 cut(s)	225, 524
Bst6I	CTCTTC	2 cut(s)	342, 583
BstC8I	GCNNGC	3 cut(s)	453, 718, 763
BstF5I	GGATG	7 cut(s)	285, 532, 536, 663, 763, 1009, 1064
BstFNI	CGCG	1 cut(s)	718
BstHHI	GCGC	2 cut(s)	718, 720
BstKTI	GATC	4 cut(s)	244, 285, 399, 923
BstMBI	GATC	4 cut(s)	241, 282, 396, 920
BstMCI	CGRYCG	1 cut(s)	585
BstMWI	GCNNNNNNNGC	3 cut(s)	461, 470, 479
BstNSI	RCATGY	2 cut(s)	556, 823
BstSCI	CCNGG	1 cut(s)	670
BstSLI	GKGCMC	2 cut(s)	592, 638
BstUI	CGCG	1 cut(s)	718
BstV1I	GCAGC	3 cut(s)	144, 159, 265
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	920
BstYI	RGATCY	1 cut(s)	920
Bsu36I	CCTNAGG	1 cut(s)	639
BsuRI	GGCC	5 cut(s)	321, 636, 808, 842, 1085
BtsCI	GGATG	7 cut(s)	285, 532, 536, 663, 763, 1009, 1064
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	5 cut(s)	149, 327, 590, 748, 876
Cac8I	GCNNGC	3 cut(s)	453, 718, 763
CfoI	GCGC	2 cut(s)	718, 720
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	5 cut(s)	319, 634, 635, 893, 961
Csp6I	GTAC	3 cut(s)	175, 823, 874
CviAII	CATG	5 cut(s)	23, 199, 403, 553, 820
CviQI	GTAC	3 cut(s)	175, 823, 874
DpnI	GATC	4 cut(s)	243, 284, 398, 922
DpnII	GATC	4 cut(s)	241, 282, 396, 920
DraI	TTTAAA	2 cut(s)	432, 984
DraIII	CACNNNGTG	2 cut(s)	611, 631
Eam1104I	CTCTTC	2 cut(s)	342, 583
EarI	CTCTTC	2 cut(s)	342, 583
Ecl136II	GAGCTC	1 cut(s)	576
Eco130I	CCWWGG	2 cut(s)	296, 906
Eco147I	AGGCCT	2 cut(s)	808, 1085
Eco24I	GRGCYC	2 cut(s)	578, 638
Eco47I	GGWCC	2 cut(s)	893, 961
Eco53kI	GAGCTC	1 cut(s)	576
Eco57I	CTGAAG	1 cut(s)	1023
Eco81I	CCTNAGG	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	576
EcoO109I	RGGNCCY	3 cut(s)	319, 635, 961
EcoT14I	CCWWGG	2 cut(s)	296, 906
EcoT22I	ATGCAT	1 cut(s)	702
EcoT38I	GRGCYC	2 cut(s)	578, 638
ErhI	CCWWGG	2 cut(s)	296, 906
FaeI	CATG	5 cut(s)	26, 202, 406, 556, 823
FalI	AAGNNNNNCTT	4 cut(s)	21, 53, 979, 1011
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	5 cut(s)	22, 198, 402, 552, 819
FauI	CCCGC	1 cut(s)	457
FbaI	TGATCA	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	133, 148, 254
FokI	GGATG	7 cut(s)	272, 519, 523, 650, 770, 1016, 1071
FriOI	GRGCYC	2 cut(s)	578, 638
Fsp4HI	GCNGC	3 cut(s)	133, 148, 254
FspBI	CTAG	2 cut(s)	419, 1049
GlaI	GCGC	2 cut(s)	717, 719
GluI	GCNGC	3 cut(s)	133, 148, 254
GsuI	CTGGAG	3 cut(s)	57, 495, 1100
HaeIII	GGCC	5 cut(s)	321, 636, 808, 842, 1085
HapII	CCGG	2 cut(s)	546, 671
HhaI	GCGC	2 cut(s)	718, 720
Hin1II	CATG	5 cut(s)	26, 202, 406, 556, 823
Hin6I	GCGC	2 cut(s)	716, 718
HinP1I	GCGC	2 cut(s)	716, 718
HinfI	GANTC	3 cut(s)	47, 707, 1018
HpaII	CCGG	2 cut(s)	546, 671
HphI	GGTGA	5 cut(s)	32, 178, 406, 560, 617
Hpy166II	GTNNAC	7 cut(s)	175, 274, 386, 569, 625, 777, 876
Hpy188I	TCNGA	7 cut(s)	52, 89, 122, 246, 262, 438, 920
Hpy188III	TCNNGA	4 cut(s)	854, 1015, 1041, 1101
Hpy8I	GTNNAC	7 cut(s)	175, 274, 386, 569, 625, 777, 876
HpyAV	CCTTC	4 cut(s)	267, 332, 851, 974
HpyCH4III	ACNGT	2 cut(s)	225, 524
HpyCH4V	TGCA	7 cut(s)	142, 147, 253, 482, 556, 700, 884
HpyF10VI	GCNNNNNNNGC	3 cut(s)	461, 470, 479
Hsp92II	CATG	5 cut(s)	26, 202, 406, 556, 823
HspAI	GCGC	2 cut(s)	716, 718
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	241, 282, 396, 920
LguI	GCTCTTC	1 cut(s)	583
Lsp1109I	GCAGC	3 cut(s)	144, 159, 265
LweI	GCATC	6 cut(s)	189, 493, 672, 748, 871, 1049
MaeI	CTAG	2 cut(s)	419, 1049
MaeIII	GTNAC	6 cut(s)	493, 511, 548, 750, 828, 989
MalI	GATC	4 cut(s)	243, 284, 398, 922
MboI	GATC	4 cut(s)	241, 282, 396, 920
MboII	GAAGA	4 cut(s)	29, 29, 329, 570
MfeI	CAATTG	2 cut(s)	483, 498
MflI	RGATCY	1 cut(s)	920
MhlI	GDGCHC	3 cut(s)	578, 592, 638
MluCI	AATT	7 cut(s)	112, 213, 291, 427, 483, 498, 976
MlyI	GAGTC	2 cut(s)	56, 1012
MmeI	TCCRAC	1 cut(s)	898
MnlI	CCTC	6 cut(s)	256, 678, 798, 904, 1075, 1096
Mph1103I	ATGCAT	1 cut(s)	702
MroXI	GAANNNNTTC	2 cut(s)	36, 311
MseI	TTAA	3 cut(s)	431, 785, 983
MslI	CAYNNNNRTG	2 cut(s)	407, 787
MspI	CCGG	2 cut(s)	546, 671
MspR9I	CCNGG	1 cut(s)	672
MunI	CAATTG	2 cut(s)	483, 498
Mva1269I	GAATGC	2 cut(s)	129, 1050
MvnI	CGCG	1 cut(s)	718
MwoI	GCNNNNNNNGC	3 cut(s)	461, 470, 479
NciI	CCSGG	1 cut(s)	672
NdeII	GATC	4 cut(s)	241, 282, 396, 920
NlaIII	CATG	5 cut(s)	26, 202, 406, 556, 823
NlaIV	GGNNCC	6 cut(s)	320, 636, 894, 922, 949, 962
NmuCI	GTSAC	2 cut(s)	548, 828
NsiI	ATGCAT	1 cut(s)	702
NspI	RCATGY	2 cut(s)	556, 823
PauI	GCGCGC	1 cut(s)	716
PceI	AGGCCT	2 cut(s)	808, 1085
PciI	ACATGT	1 cut(s)	819
PciSI	GCTCTTC	1 cut(s)	583
PctI	GAATGC	2 cut(s)	129, 1050
PdmI	GAANNNNTTC	2 cut(s)	36, 311
PfeI	GAWTC	1 cut(s)	707
PflFI	GACNNNGTC	1 cut(s)	442
PflMI	CCANNNNNTGG	1 cut(s)	114
PkrI	GCNGC	3 cut(s)	134, 149, 255
PleI	GAGTC	2 cut(s)	55, 1012
PpsI	GAGTC	2 cut(s)	55, 1012
PpuMI	RGGWCCY	1 cut(s)	961
PscI	ACATGT	1 cut(s)	819
PsiI	TTATAA	1 cut(s)	732
Psp124BI	GAGCTC	1 cut(s)	578
Psp5II	RGGWCCY	1 cut(s)	961
PspN4I	GGNNCC	6 cut(s)	320, 636, 894, 922, 949, 962
PspOMI	GGGCCC	1 cut(s)	634
PspPI	GGNCC	5 cut(s)	319, 634, 635, 893, 961
PspPPI	RGGWCCY	1 cut(s)	961
PsuI	RGATCY	1 cut(s)	920
PsyI	GACNNNGTC	1 cut(s)	442
PteI	GCGCGC	1 cut(s)	716
RsaI	GTAC	3 cut(s)	176, 824, 875
RsaNI	GTAC	3 cut(s)	175, 823, 874
RseI	CAYNNNNRTG	2 cut(s)	407, 787
SacI	GAGCTC	1 cut(s)	578
SapI	GCTCTTC	1 cut(s)	583
SaqAI	TTAA	3 cut(s)	431, 785, 983
SatI	GCNGC	3 cut(s)	133, 148, 254
Sau3AI	GATC	4 cut(s)	241, 282, 396, 920
Sau96I	GGNCC	5 cut(s)	319, 634, 635, 893, 961
SchI	GAGTC	2 cut(s)	56, 1012
ScrFI	CCNGG	1 cut(s)	672
SduI	GDGCHC	3 cut(s)	578, 592, 638
SetI	ASST	7 cut(s)	152, 563, 578, 630, 741, 771, 915
SfaNI	GCATC	6 cut(s)	189, 493, 672, 748, 871, 1049
SinI	GGWCC	2 cut(s)	893, 961
SmiI	ATTTAAAT	1 cut(s)	432
SmiMI	CAYNNNNRTG	2 cut(s)	407, 787
Sse9I	AATT	7 cut(s)	112, 213, 291, 427, 483, 498, 976
SseBI	AGGCCT	2 cut(s)	808, 1085
SsiI	CCGC	3 cut(s)	355, 464, 792
SspMI	CTAG	2 cut(s)	419, 1049
SstI	GAGCTC	1 cut(s)	578
StuI	AGGCCT	2 cut(s)	808, 1085
StyD4I	CCNGG	1 cut(s)	670
StyI	CCWWGG	2 cut(s)	296, 906
SwaI	ATTTAAAT	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	225, 524
TaqII	GACCGA	1 cut(s)	571
TasI	AATT	7 cut(s)	112, 213, 291, 427, 483, 498, 976
TatI	WGTACW	1 cut(s)	822
TfiI	GAWTC	1 cut(s)	707
Tru1I	TTAA	3 cut(s)	431, 785, 983
Tru9I	TTAA	3 cut(s)	431, 785, 983
TscAI	CASTG	5 cut(s)	149, 334, 597, 748, 883
TseFI	GTSAC	2 cut(s)	548, 828
TseI	GCWGC	3 cut(s)	132, 147, 253
Tsp45I	GTSAC	2 cut(s)	548, 828
TspDTI	ATGAA	1 cut(s)	39
TspGWI	ACGGA	1 cut(s)	885
TspRI	CASTG	5 cut(s)	149, 334, 597, 748, 883
Tth111I	GACNNNGTC	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	114
VpaK11BI	GGWCC	2 cut(s)	893, 961
XapI	RAATTY	3 cut(s)	291, 427, 976
XceI	RCATGY	2 cut(s)	556, 823
XmiI	GTMKAC	1 cut(s)	273
XmnI	GAANNNNTTC	2 cut(s)	36, 311
XspI	CTAG	2 cut(s)	419, 1049
Zsp2I	ATGCAT	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.