Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006493

Physical Location & Seq

Genomic Coordinates Forward (+)

60306311 .. 60307928

Gene Structure 1618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGACTCCTTCGTCCCTCGCCACGACGCCATGGCTACTCTGCGAGGCTCAAACGCCCGGTCCCATCGAGCCACCTCCACCTCTCCACGCGGCCACGCCTCCTCCTGTTTCTAAAGCCCAAGATTATTTCATTGCTTTTGGAGAATGGAGCGGATGTAAACTCCAGAAATTACTATGGGCAGGTGTAATTGGGGTTGTCTCCATGCTTGTGCTATCACTGGACAAGAAATTAGATCTTACAATGTCCCCGTTGTCCCCGATGGTGGGGAGTGCTGGAGTAGCAATAGCAGATGTGACAATTGATGCTTGTGTTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

105

Amino Acids

10.96

Weight (kDa)

4.7

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79710 AT1G79710 AT1G79710
fragaria_vesca	FvH4_6g28210 FvH4_6g28210
malus_domestica	MD09G1228300.v1.1 MD17G1226600.v1.1
prunus_persica	Prupe.3G104000_v2.0.a1 Prupe.3G104000_v2.0.a1
pyrus_communis	pycom09g14730 pycom17g23000
rosa_chinensis	RchiOBHm_Chr2g0132271
rosa_laevigata	RLG00000019242
rosa_multiflora	Rmu_co8174094.1_g000001 Rmu_sc0002403.1_g000007
rosa_roxburghii	Rroxscaffold_1G00012850 Rroxscaffold_2G00102370 Rroxscaffold_2G00112210 Rroxscaffold_3G00267220 Rroxscaffold_3G00267230
rosa_rugosa	Rorug02G0303300
rosa_samantha	Rh2AG356300 Rh2BG362700 Rh2CG339800 Rh2DG379600
rosa_wichuraiana	Rw2G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	170
AasI	GACNNNNNNGTC	1 cut(s)	10
Acc36I	ACCTGC	1 cut(s)	170
AccBSI	CCGCTC	1 cut(s)	150
AccII	CGCG	1 cut(s)	89
AciI	CCGC	2 cut(s)	89, 150
AcoI	YGGCCR	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	262, 263
Alw26I	GTCTC	1 cut(s)	202
AoxI	GGCC	1 cut(s)	90
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
AspS9I	GGNCC	1 cut(s)	59
AsuC2I	CCSGG	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	59
BccI	CCATC	2 cut(s)	71, 253
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	202
BfuAI	ACCTGC	1 cut(s)	170
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	292
BpmI	CTGGAG	2 cut(s)	146, 294
BpuMI	CCSGG	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	29
BsaXI	ACNNNNNCTCC	4 cut(s)	85, 115, 139, 169
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 263
Bse1I	ACTGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	158
BseLI	CCNNNNNNNGG	2 cut(s)	262, 263
BseMI	GCAATG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	3 cut(s)	45, 229, 238
BslI	CCNNNNNNNGG	2 cut(s)	262, 263
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	3 cut(s)	45, 229, 238
BsnI	GGCC	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	232
Bsp19I	CCATGG	1 cut(s)	29
BspACI	CCGC	2 cut(s)	89, 150
BspANI	GGCC	1 cut(s)	92
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	1 cut(s)	232
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	29
BstACI	GRCGYC	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	158
BstFNI	CGCG	1 cut(s)	89
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	55
BstSNI	TACGTA	1 cut(s)	315
BstUI	CGCG	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	92
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	215
BveI	ACCTGC	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	59
CseI	GACGC	1 cut(s)	34
CviAII	CATG	2 cut(s)	30, 202
CviJI	RGCY	5 cut(s)	34, 47, 70, 92, 116
CviKI_1	RGCY	5 cut(s)	34, 47, 70, 92, 116
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	90
Eco105I	TACGTA	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	2 cut(s)	33, 205
FaiI	YATR	3 cut(s)	31, 175, 203
FaqI	GGGAC	3 cut(s)	45, 229, 238
FatI	CATG	2 cut(s)	29, 201
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	90
GsuI	CTGGAG	2 cut(s)	146, 294
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	1 cut(s)	57
HgaI	GACGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	33, 205
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	57
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	158
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	18
HpyCH4IV	ACGT	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpySE526I	ACGT	1 cut(s)	314
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	33, 205
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	6 cut(s)	70, 117, 165, 176, 203, 258
LweI	GCATC	1 cut(s)	292
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	2 cut(s)	292, 310
MalI	GATC	1 cut(s)	234
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	1 cut(s)	232
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	4 cut(s)	167, 186, 227, 297
MnlI	CCTC	6 cut(s)	26, 37, 84, 90, 108, 111
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	57
MunI	CAATTG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	278
NciI	CCSGG	1 cut(s)	57
NcoI	CCATGG	1 cut(s)	29
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	33, 205
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	292
PaqCI	CACCTGC	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	91
Ppu21I	YACGTR	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	206
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	4 cut(s)	76, 82, 184, 317
SfaNI	GCATC	1 cut(s)	292
SinI	GGWCC	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	206
SnaBI	TACGTA	1 cut(s)	315
Sse9I	AATT	4 cut(s)	167, 186, 227, 297
SsiI	CCGC	2 cut(s)	89, 150
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	29
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	1 cut(s)	66
TasI	AATT	4 cut(s)	167, 186, 227, 297
TauI	GCSGC	1 cut(s)	92
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	118
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.