Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006493

Physical Location & Seq

Genomic Coordinates Forward (+)

60308715 .. 60309848

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGTGCTTTTCTGGACTCGGTTTACTCTATGGCATATCGGGATTGCTAGACTTGGTATTCGTGTTGCGCATAAATTTGAAACTCGGTTTACCGGACTATCTTTTTGTTGTGATTGATGAAGCAGTTTCTCGGATGATTGGGCGTCTTAAGTGGATGCCTCTTCTTGTACTTAGTTCAAAACTCTGCCTGCGGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

65

Amino Acids

7.28

Weight (kDa)

9.24

Isoelectric Point (pI)

29.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BT1	PF03092	8 - 62	9e-17	BT1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0006493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79710 AT1G79710 AT1G79710
fragaria_vesca	FvH4_6g28210 FvH4_6g28210
malus_domestica	MD09G1228300.v1.1 MD17G1226600.v1.1
prunus_persica	Prupe.3G104000_v2.0.a1 Prupe.3G104000_v2.0.a1
pyrus_communis	pycom09g14730 pycom17g23000
rosa_chinensis	RchiOBHm_Chr2g0132271
rosa_laevigata	RLG00000019242
rosa_multiflora	Rmu_co8174094.1_g000001 Rmu_sc0002403.1_g000007
rosa_roxburghii	Rroxscaffold_1G00012850 Rroxscaffold_2G00102370 Rroxscaffold_2G00112210 Rroxscaffold_3G00267220 Rroxscaffold_3G00267230
rosa_rugosa	Rorug02G0303300
rosa_samantha	Rh2AG356300 Rh2BG362700 Rh2CG339800 Rh2DG379600
rosa_wichuraiana	Rw2G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	68
AciI	CCGC	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	142
AfaI	GTAC	1 cut(s)	168
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	79, 177
ApoI	RAATTY	1 cut(s)	73
ArsI	GACNNNNNNTTYG	4 cut(s)	41, 73, 86, 118
AspLEI	GCGC	1 cut(s)	69
BfaI	CTAG	1 cut(s)	47
BfrI	CTTAAG	1 cut(s)	146
BmsI	GCATC	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	142
BsaWI	WCCGGW	1 cut(s)	91
BseGI	GGATG	2 cut(s)	138, 159
BsiSI	CCGG	1 cut(s)	92
BspACI	CCGC	1 cut(s)	190
BspTI	CTTAAG	1 cut(s)	146
BssNI	GRCGYC	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	142
BstAFI	CTTAAG	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	138, 159
BstHHI	GCGC	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	138, 159
Cac8I	GCNNGC	1 cut(s)	188
CfoI	GCGC	1 cut(s)	69
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	167
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
FaiI	YATR	4 cut(s)	30, 35, 71, 196
FauI	CCCGC	1 cut(s)	183
FokI	GGATG	2 cut(s)	145, 166
FspBI	CTAG	1 cut(s)	47
FspI	TGCGCA	1 cut(s)	68
GlaI	GCGC	1 cut(s)	68
HapII	CCGG	1 cut(s)	92
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	23, 89
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	2 cut(s)	12, 39
Hpy8I	GTNNAC	2 cut(s)	23, 89
HpyF3I	CTNAG	1 cut(s)	170
Hsp92I	GRCGYC	1 cut(s)	142
HspAI	GCGC	1 cut(s)	67
LpnPI	CCDG	1 cut(s)	105
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	47
MboII	GAAGA	1 cut(s)	152
MluCI	AATT	1 cut(s)	73
MlyI	GAGTC	1 cut(s)	9
MnlI	CCTC	1 cut(s)	168
MseI	TTAA	1 cut(s)	147
MspCI	CTTAAG	1 cut(s)	146
MspI	CCGG	1 cut(s)	92
NsbI	TGCGCA	1 cut(s)	68
PleI	GAGTC	1 cut(s)	9
PpsI	GAGTC	1 cut(s)	9
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	147
SchI	GAGTC	1 cut(s)	9
SfaNI	GCATC	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	1 cut(s)	190
SspMI	CTAG	1 cut(s)	47
TasI	AATT	1 cut(s)	73
TatI	WGTACW	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TspDTI	ATGAA	1 cut(s)	132
Vha464I	CTTAAG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	73
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.