Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8174094.1

Orthogroup ID

OG0006493

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 677

Gene Structure 677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8174094.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 395 bp

gaagagtagaaccatggaaatggaggcagactctcaggaaagagaagctctccaccatgaagcccagaacaaaaaggagaagttttctgtacagggtctctgggatttgctatggtctcccataaattggttcaaaatgctcagtagtgagttgcattggagctttgtgatcagcgtggtcatagtttatggtatcagtcagggtctgagtatgggattgagtagaattagcatacagtattacttgaaagatgagcagaaagtgcagccctctgaggcccaagtgtacctggggatcattcaaattccatggatggttaaaccactttggggtcttttcactgatactcttcctattcttgggtaccgcagaaagccttactttgtttttgctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

131

Amino Acids

15.38

Weight (kDa)

8.14

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79710 AT1G79710 AT1G79710
fragaria_vesca	FvH4_6g28210 FvH4_6g28210
malus_domestica	MD09G1228300.v1.1 MD17G1226600.v1.1
prunus_persica	Prupe.3G104000_v2.0.a1 Prupe.3G104000_v2.0.a1
pyrus_communis	pycom09g14730 pycom17g23000
rosa_chinensis	RchiOBHm_Chr2g0132271
rosa_laevigata	RLG00000019242
rosa_multiflora	Rmu_co8174094.1_g000001 Rmu_sc0002403.1_g000007
rosa_roxburghii	Rroxscaffold_1G00012850 Rroxscaffold_2G00102370 Rroxscaffold_2G00112210 Rroxscaffold_3G00267220 Rroxscaffold_3G00267230
rosa_rugosa	Rorug02G0303300
rosa_samantha	Rh2AG356300 Rh2BG362700 Rh2CG339800 Rh2DG379600
rosa_wichuraiana	Rw2G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	364
AccB1I	GGYRCC	1 cut(s)	364
AccB7I	CCANNNNNTGG	1 cut(s)	127
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	304
AfaI	GTAC	3 cut(s)	91, 288, 366
AfiI	CCNNNNNNNGG	3 cut(s)	127, 330, 360
AgsI	TTSAA	3 cut(s)	134, 248, 303
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	2 cut(s)	48, 163
AluI	AGCT	2 cut(s)	48, 163
Alw26I	GTCTC	2 cut(s)	102, 121
AlwI	GGATC	1 cut(s)	303
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	304
Asp718I	GGTACC	1 cut(s)	364
AspS9I	GGNCC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	1 cut(s)	308
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	102, 121
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	291
BplI	GAGNNNNNCTC	4 cut(s)	15, 47, 34, 66
BsaI	GGTCTC	2 cut(s)	102, 121
BsaJI	CCNNGG	3 cut(s)	13, 290, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 330, 360
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	13, 290, 309
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	3 cut(s)	127, 330, 360
BseMII	CTCAG	4 cut(s)	48, 155, 198, 265
BseXI	GCAGC	1 cut(s)	278
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	279
BshNI	GGYRCC	1 cut(s)	364
BslI	CCNNNNNNNGG	3 cut(s)	127, 330, 360
BsmAI	GTCTC	2 cut(s)	102, 121
BsnI	GGCC	1 cut(s)	279
Bso31I	GGTCTC	2 cut(s)	102, 121
Bsp1407I	TGTACA	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	169, 295
Bsp19I	CCATGG	2 cut(s)	13, 309
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	4 cut(s)	47, 154, 199, 266
BspLI	GGNNCC	1 cut(s)	366
BspPI	GGATC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	364
BspTNI	GGTCTC	2 cut(s)	102, 121
BsrGI	TGTACA	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	13, 290, 309
BssMI	GATC	2 cut(s)	169, 295
BssT1I	CCWWGG	2 cut(s)	13, 309
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	355
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstAUI	TGTACA	1 cut(s)	89
BstDEI	CTNAG	4 cut(s)	34, 141, 207, 274
BstDSI	CCRYGG	2 cut(s)	13, 309
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	2 cut(s)	172, 298
BstMAI	GTCTC	2 cut(s)	102, 121
BstMBI	GATC	2 cut(s)	169, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	278
BstXI	CCANNNNNNTGG	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	279
BtgI	CCRYGG	2 cut(s)	13, 309
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	340
CaiI	CAGNNNCTG	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	278
Csp6I	GTAC	3 cut(s)	90, 287, 365
CviAII	CATG	3 cut(s)	14, 57, 310
CviJI	RGCY	6 cut(s)	48, 63, 163, 269, 279, 377
CviKI_1	RGCY	6 cut(s)	48, 63, 163, 269, 279, 377
CviQI	GTAC	3 cut(s)	90, 287, 365
DdeI	CTNAG	4 cut(s)	34, 141, 207, 274
DpnI	GATC	2 cut(s)	171, 297
DpnII	GATC	2 cut(s)	169, 295
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
Eco130I	CCWWGG	2 cut(s)	13, 309
Eco31I	GGTCTC	2 cut(s)	102, 121
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	13, 309
ErhI	CCWWGG	2 cut(s)	13, 309
FaeI	CATG	3 cut(s)	17, 60, 313
FaiI	YATR	9 cut(s)	15, 58, 113, 123, 183, 190, 213, 234, 311
FalI	AAGNNNNNCTT	1 cut(s)	366
FatI	CATG	3 cut(s)	13, 56, 309
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	267
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	17, 60, 313
HinfI	GANTC	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	2 cut(s)	208, 275
Hpy188III	TCNNGA	1 cut(s)	36
Hpy8I	GTNNAC	1 cut(s)	287
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	155, 266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	4 cut(s)	34, 141, 207, 274
Hsp92II	CATG	3 cut(s)	17, 60, 313
KpnI	GGTACC	1 cut(s)	368
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	169, 295
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	7 cut(s)	21, 78, 78, 86, 186, 276, 303
Lsp1109I	GCAGC	1 cut(s)	278
MalI	GATC	2 cut(s)	171, 297
MboI	GATC	2 cut(s)	169, 295
MboII	GAAGA	2 cut(s)	14, 342
MluCI	AATT	3 cut(s)	125, 226, 304
MlyI	GAGTC	1 cut(s)	24
MnlI	CCTC	3 cut(s)	17, 269, 281
MseI	TTAA	1 cut(s)	319
MslI	CAYNNNNRTG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	263
NcoI	CCATGG	2 cut(s)	13, 309
NdeII	GATC	2 cut(s)	169, 295
NlaIII	CATG	3 cut(s)	17, 60, 313
NlaIV	GGNNCC	1 cut(s)	366
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	278
PstNI	CAGNNNCTG	1 cut(s)	206
RsaI	GTAC	3 cut(s)	91, 288, 366
RsaNI	GTAC	3 cut(s)	90, 287, 365
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	319
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	2 cut(s)	169, 295
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	3 cut(s)	50, 165, 292
SmiMI	CAYNNNNRTG	1 cut(s)	18
Sse9I	AATT	3 cut(s)	125, 226, 304
SsiI	CCGC	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	13, 309
TaaI	ACNGT	1 cut(s)	238
TasI	AATT	3 cut(s)	125, 226, 304
TatI	WGTACW	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	319
Tru9I	TTAA	1 cut(s)	319
TscAI	CASTG	1 cut(s)	347
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	347
Van91I	CCANNNNNTGG	1 cut(s)	127
XapI	RAATTY	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.