Rh2BG362700

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006493
Physical Location & Seq
Forward (+)
50282708 .. 50289697
6990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG362700.1

Sequence Viewer

Length: 1179 bp
ATGGCTTATTTACCAGAAGGCTATTCCCCTCTTTTGCTTTATTTTTTTTCCTTTCTCTTTCCAGGTGTAATTGGGGTTGTCTCCATGCTTGTGCTATCACTGGACAAGAAATTAGATCTTACAATGTCCCTGTTGTCCCTGATGGTGGGGAGTGCTGGAGTAGCAATAGCAGATGTGACAATTGATGCTTGTGTTACAGAAAACAGTATTAGTCACCCATCCCTTGCTGGTGACATGCAAAGCTTGTGTGGACTGACCTCTTCAGTTGGGGCACTGGTGGGATTCTCACTTAGTGGATTTTTTGTTCACCTATTAGGGCCTAAGGGTGTGTTTGGGTTGCTCAGCATTCCTCCGGGGCTGGTCATTTTCGTTGGGATGATGCTTAGGGAATCCCATTTGCACAGCTTTTCTCATAGACGGGTCAGTGAAAAGTTTCTGGATTCTGGAAAGGCTATGTGGACAACCCTGAAATGCAGCAGTGTGTGGAGGCCTTGTTTGTACATGTATTTGTCACTTGCTTTGAGCTTGAGTGTCCGTGAAGGAATGTTTTACTGGTACACAGATGCAAAAGGGGGGCCAACTTTCTCAAAGGAGGTTGTTGGGTCCATATTCTCTATTGGTGCTCTTGGCTCCCTTTTTGGGGTCCTCCTCTACCAAAACTTCTTGAAAAGTTACCCTTTCCGTGATGTGCTTTTCTGGACTCAGTTACTCTATGGTATATCAGGATTGCTAGACTTGGTATTCGTGCTGCGCATAAATTTGAAACTCGGTTTACCAGACTATCTTTTTGTTGTGATTGATGAAGCAGTTTCTCAGATGATTGGGCGCCTTAAGTGGATGCCTCTTCTTGTACTTAGTTCAAAACTCTGCCCTGCGGGTATAGAAGGCACTTTCTTTGCTTTGCTCATGTCCATTGATCATGTTGGGATTCTCTCATCTACTTGGGCTGGAGGCCTCTTACTCCACATCTTGAATATCACACGGACACAGTTCGAAAATCTTTGGATGGCCATTTTGATTCGGAGCATATTGAGAATTTTGCCAATTGCACTACTTTTCTTAATACCTCGAACTGATCCGAACTCCTCTATTCTTCCATCTGAGATGTTGAGGACCAAAAAAGGTGATGATCTTGAGTCTGAAAATCTTGAAATGGCCTCCCTTGTCAATGGTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BT1

Protein Analysis

392

Amino Acids

43.08

Weight (kDa)

6.65

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BT1 PF03092 21 - 360 2e-93 BT1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 752
AccB1I GGYRCC 1 cut(s) 825
AciI CCGC 1 cut(s) 875
AclWI GGATC 1 cut(s) 1070
AcoI YGGCCR 1 cut(s) 1008
AcsI RAATTY 2 cut(s) 757, 1035
AcuI CTGAAG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 826
AdeI CACNNNGTG 1 cut(s) 293
AfaI GTAC 3 cut(s) 500, 557, 852
AfiI CCNNNNNNNGG 3 cut(s) 145, 639, 640
AflII CTTAAG 1 cut(s) 830
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 5 cut(s) 667, 763, 861, 973, 1151
AjnI CCWGG 1 cut(s) 61
AloI GAACNNNNNNTCC 2 cut(s) 288, 320
AluBI AGCT 3 cut(s) 243, 405, 525
AluI AGCT 3 cut(s) 243, 405, 525
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 1 cut(s) 85
AlwI GGATC 1 cut(s) 1070
AoxI GGCC 6 cut(s) 317, 488, 575, 952, 1008, 1155
ApeKI GCWGC 2 cut(s) 474, 748
ApoI RAATTY 2 cut(s) 757, 1035
ArsI GACNNNNNNTTYG 4 cut(s) 725, 757, 770, 802
Asp700I GAANNNNTTC 1 cut(s) 432
AspLEI GCGC 2 cut(s) 753, 828
AspS9I GGNCC 5 cut(s) 317, 575, 603, 643, 1113
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 4 cut(s) 206, 242, 299, 1136
AsuII TTCGAA 1 cut(s) 993
AvaII GGWCC 3 cut(s) 603, 643, 1113
AxyI CCTNAGG 1 cut(s) 321
BaeGI GKGCMC 1 cut(s) 274
BalI TGGCCA 1 cut(s) 1010
BanI GGYRCC 1 cut(s) 825
Bbv12I GWGCWC 1 cut(s) 625
BbvI GCAGC 2 cut(s) 486, 735
BccI CCATC 4 cut(s) 136, 226, 1000, 1105
BciT130I CCWGG 1 cut(s) 63
BclI TGATCA 1 cut(s) 916
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 1 cut(s) 731
BfoI RGCGCY 1 cut(s) 829
BfrI CTTAAG 1 cut(s) 830
BglII AGATCT 1 cut(s) 115
BisI GCNGC 2 cut(s) 475, 749
BlpI GCTNAGC 1 cut(s) 341
BlsI GCNGC 2 cut(s) 476, 750
Bme1390I CCNGG 2 cut(s) 63, 354
Bme18I GGWCC 3 cut(s) 603, 643, 1113
BmgT120I GGNCC 5 cut(s) 317, 575, 603, 643, 1113
BmiI GGNNCC 5 cut(s) 576, 604, 631, 644, 827
BmrFI CCNGG 2 cut(s) 63, 354
BmsI GCATC 4 cut(s) 175, 369, 553, 828
BpmI CTGGAG 2 cut(s) 177, 969
Bpu10I CCTNAGC 1 cut(s) 383
Bpu1102I GCTNAGC 1 cut(s) 341
Bpu14I TTCGAA 1 cut(s) 993
BpuEI CTTGAG 2 cut(s) 547, 1154
BpuMI CCSGG 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 826
BsaJI CCNNGG 1 cut(s) 353
BsaXI ACNNNNNCTCC 2 cut(s) 478, 508
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 639, 640
Bse1I ACTGG 3 cut(s) 105, 279, 557
Bse21I CCTNAGG 1 cut(s) 321
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 4 cut(s) 218, 381, 843, 1011
BseLI CCNNNNNNNGG 3 cut(s) 145, 639, 640
BseMII CTCAG 4 cut(s) 355, 716, 827, 1092
BseNI ACTGG 3 cut(s) 105, 279, 557
BseRI GAGGAG 2 cut(s) 638, 1075
BseSI GKGCMC 1 cut(s) 274
BseXI GCAGC 2 cut(s) 486, 735
BshFI GGCC 6 cut(s) 319, 490, 577, 954, 1010, 1157
BshNI GGYRCC 1 cut(s) 825
BsiHKAI GWGCWC 1 cut(s) 625
BsiSI CCGG 1 cut(s) 353
BslFI GGGAC 2 cut(s) 112, 121
BslI CCNNNNNNNGG 3 cut(s) 145, 639, 640
BsmAI GTCTC 1 cut(s) 85
BsmFI GGGAC 2 cut(s) 112, 121
BsmI GAATGC 1 cut(s) 345
BsnI GGCC 6 cut(s) 319, 490, 577, 954, 1010, 1157
Bsp119I TTCGAA 1 cut(s) 993
Bsp1286I GDGCHC 2 cut(s) 274, 625
Bsp1407I TGTACA 1 cut(s) 498
Bsp143I GATC 4 cut(s) 115, 916, 1075, 1129
Bsp1720I GCTNAGC 1 cut(s) 341
BspACI CCGC 1 cut(s) 875
BspANI GGCC 6 cut(s) 319, 490, 577, 954, 1010, 1157
BspCNI CTCAG 4 cut(s) 354, 715, 826, 1093
BspLI GGNNCC 5 cut(s) 576, 604, 631, 644, 827
BspPI GGATC 1 cut(s) 1070
BspT104I TTCGAA 1 cut(s) 993
BspT107I GGYRCC 1 cut(s) 825
BspTI CTTAAG 1 cut(s) 830
BsrGI TGTACA 1 cut(s) 498
BsrI ACTGG 3 cut(s) 105, 279, 557
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 4 cut(s) 115, 916, 1075, 1129
BssNI GRCGYC 1 cut(s) 826
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 206, 990
Bst6I CTCTTC 2 cut(s) 265, 849
BstACI GRCGYC 1 cut(s) 826
BstAFI CTTAAG 1 cut(s) 830
BstAUI TGTACA 1 cut(s) 498
BstBI TTCGAA 1 cut(s) 993
BstDEI CTNAG 8 cut(s) 290, 321, 341, 383, 702, 813, 854, 1101
BstF5I GGATG 4 cut(s) 218, 381, 843, 1011
BstH2I RGCGCY 1 cut(s) 829
BstHHI GCGC 2 cut(s) 753, 828
BstKTI GATC 4 cut(s) 118, 919, 1078, 1132
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 4 cut(s) 115, 916, 1075, 1129
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 2 cut(s) 238, 505
BstSCI CCNGG 2 cut(s) 61, 352
BstSLI GKGCMC 1 cut(s) 274
BstV1I GCAGC 2 cut(s) 486, 735
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
Bsu36I CCTNAGG 1 cut(s) 321
BsuRI GGCC 6 cut(s) 319, 490, 577, 954, 1010, 1157
BtsCI GGATG 4 cut(s) 218, 381, 843, 1011
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 4 cut(s) 98, 272, 430, 484
CfoI GCGC 2 cut(s) 753, 828
Cfr13I GGNCC 5 cut(s) 317, 575, 603, 643, 1113
Csp6I GTAC 3 cut(s) 499, 556, 851
CviAII CATG 5 cut(s) 85, 235, 502, 907, 920
CviQI GTAC 3 cut(s) 499, 556, 851
DdeI CTNAG 8 cut(s) 290, 321, 341, 383, 702, 813, 854, 1101
DinI GGCGCC 1 cut(s) 827
DpnI GATC 4 cut(s) 117, 918, 1077, 1131
DpnII GATC 4 cut(s) 115, 916, 1075, 1129
DraIII CACNNNGTG 1 cut(s) 293
EaeI YGGCCR 1 cut(s) 1008
Eam1104I CTCTTC 2 cut(s) 265, 849
EarI CTCTTC 2 cut(s) 265, 849
Eco147I AGGCCT 2 cut(s) 490, 954
Eco47I GGWCC 3 cut(s) 603, 643, 1113
Eco57I CTGAAG 1 cut(s) 246
Eco81I CCTNAGG 1 cut(s) 321
EcoO109I RGGNCCY 2 cut(s) 317, 643
EcoRII CCWGG 1 cut(s) 61
EgeI GGCGCC 1 cut(s) 827
EheI GGCGCC 1 cut(s) 827
FaeI CATG 5 cut(s) 88, 238, 505, 910, 923
FalI AAGNNNNNCTT 2 cut(s) 661, 693
FaqI GGGAC 2 cut(s) 112, 121
FatI CATG 5 cut(s) 84, 234, 501, 906, 919
FauI CCCGC 1 cut(s) 868
FbaI TGATCA 1 cut(s) 916
Fnu4HI GCNGC 2 cut(s) 475, 749
FokI GGATG 4 cut(s) 205, 388, 850, 1018
Fsp4HI GCNGC 2 cut(s) 475, 749
FspBI CTAG 1 cut(s) 731
FspI TGCGCA 1 cut(s) 752
GlaI GCGC 2 cut(s) 752, 827
GluI GCNGC 2 cut(s) 475, 749
GsuI CTGGAG 2 cut(s) 177, 969
HaeII RGCGCY 1 cut(s) 829
HaeIII GGCC 6 cut(s) 319, 490, 577, 954, 1010, 1157
HapII CCGG 1 cut(s) 353
HhaI GCGC 2 cut(s) 753, 828
Hin1I GRCGYC 1 cut(s) 826
Hin1II CATG 5 cut(s) 88, 238, 505, 910, 923
Hin6I GCGC 2 cut(s) 751, 826
HinP1I GCGC 2 cut(s) 751, 826
HindIII AAGCTT 1 cut(s) 241
HinfI GANTC 7 cut(s) 282, 389, 440, 700, 928, 1018, 1136
HpaII CCGG 1 cut(s) 353
HphI GGTGA 4 cut(s) 206, 242, 299, 1136
Hpy166II GTNNAC 5 cut(s) 251, 307, 459, 558, 773
Hpy188I TCNGA 6 cut(s) 816, 1023, 1080, 1102, 1141, 1178
Hpy188III TCNNGA 8 cut(s) 437, 444, 664, 697, 723, 970, 1133, 1148
Hpy8I GTNNAC 5 cut(s) 251, 307, 459, 558, 773
HpyAV CCTTC 3 cut(s) 11, 533, 878
HpyCH4III ACNGT 2 cut(s) 206, 990
HpyCH4V TGCA 5 cut(s) 238, 400, 474, 566, 1049
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 8 cut(s) 290, 321, 341, 383, 702, 813, 854, 1101
Hsp92I GRCGYC 1 cut(s) 826
Hsp92II CATG 5 cut(s) 88, 238, 505, 910, 923
HspAI GCGC 2 cut(s) 751, 826
KasI GGCGCC 1 cut(s) 825
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 4 cut(s) 115, 916, 1075, 1129
LmnI GCTCC 2 cut(s) 635, 1023
Lsp1109I GCAGC 2 cut(s) 486, 735
LweI GCATC 4 cut(s) 175, 369, 553, 828
MaeI CTAG 1 cut(s) 731
MaeIII GTNAC 7 cut(s) 175, 193, 212, 230, 510, 671, 705
MalI GATC 4 cut(s) 117, 918, 1077, 1131
MboI GATC 4 cut(s) 115, 916, 1075, 1129
MboII GAAGA 3 cut(s) 252, 836, 1085
MfeI CAATTG 2 cut(s) 180, 1044
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 2 cut(s) 274, 625
MlsI TGGCCA 1 cut(s) 1010
MluCI AATT 6 cut(s) 69, 110, 180, 757, 1035, 1044
MluNI TGGCCA 1 cut(s) 1010
Mly113I GGCGCC 1 cut(s) 826
MlyI GAGTC 2 cut(s) 694, 1145
Mox20I TGGCCA 1 cut(s) 1010
MroXI GAANNNNTTC 1 cut(s) 432
MscI TGGCCA 1 cut(s) 1010
MseI TTAA 2 cut(s) 831, 1061
MslI CAYNNNNRTG 1 cut(s) 89
Msp20I TGGCCA 1 cut(s) 1010
MspCI CTTAAG 1 cut(s) 830
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 2 cut(s) 63, 354
MunI CAATTG 2 cut(s) 180, 1044
Mva1269I GAATGC 1 cut(s) 345
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 161
NarI GGCGCC 1 cut(s) 826
NciI CCSGG 1 cut(s) 354
NdeII GATC 4 cut(s) 115, 916, 1075, 1129
NlaIII CATG 5 cut(s) 88, 238, 505, 910, 923
NlaIV GGNNCC 5 cut(s) 576, 604, 631, 644, 827
NmuCI GTSAC 4 cut(s) 175, 212, 230, 510
NsbI TGCGCA 1 cut(s) 752
NspI RCATGY 2 cut(s) 238, 505
NspV TTCGAA 1 cut(s) 993
PceI AGGCCT 2 cut(s) 490, 954
PciI ACATGT 1 cut(s) 501
PctI GAATGC 1 cut(s) 345
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 5 cut(s) 282, 389, 440, 928, 1018
PkrI GCNGC 2 cut(s) 476, 750
PleI GAGTC 2 cut(s) 694, 1144
PluTI GGCGCC 1 cut(s) 829
PpsI GAGTC 2 cut(s) 694, 1144
PpuMI RGGWCCY 1 cut(s) 643
PscI ACATGT 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 643
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 5 cut(s) 576, 604, 631, 644, 827
PspPI GGNCC 5 cut(s) 317, 575, 603, 643, 1113
PspPPI RGGWCCY 1 cut(s) 643
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 3 cut(s) 500, 557, 852
RsaNI GTAC 3 cut(s) 499, 556, 851
RseI CAYNNNNRTG 1 cut(s) 89
SaqAI TTAA 2 cut(s) 831, 1061
SatI GCNGC 2 cut(s) 475, 749
Sau3AI GATC 4 cut(s) 115, 916, 1075, 1129
Sau96I GGNCC 5 cut(s) 317, 575, 603, 643, 1113
SchI GAGTC 2 cut(s) 694, 1145
ScrFI CCNGG 2 cut(s) 63, 354
SduI GDGCHC 2 cut(s) 274, 625
SetI ASST 9 cut(s) 67, 245, 260, 312, 407, 527, 597, 1069, 1126
SfaNI GCATC 4 cut(s) 175, 369, 553, 828
SfoI GGCGCC 1 cut(s) 827
SfuI TTCGAA 1 cut(s) 993
SinI GGWCC 3 cut(s) 603, 643, 1113
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 3 cut(s) 526, 830, 1133
SmoI CTYRAG 3 cut(s) 526, 830, 1133
Sse9I AATT 6 cut(s) 69, 110, 180, 757, 1035, 1044
SseBI AGGCCT 2 cut(s) 490, 954
SsiI CCGC 1 cut(s) 875
SspDI GGCGCC 1 cut(s) 825
SspMI CTAG 1 cut(s) 731
StuI AGGCCT 2 cut(s) 490, 954
StyD4I CCNGG 2 cut(s) 61, 352
TaaI ACNGT 2 cut(s) 206, 990
TaqI TCGA 2 cut(s) 993, 1069
TasI AATT 6 cut(s) 69, 110, 180, 757, 1035, 1044
TatI WGTACW 2 cut(s) 498, 850
TfiI GAWTC 5 cut(s) 282, 389, 440, 928, 1018
Tru1I TTAA 2 cut(s) 831, 1061
Tru9I TTAA 2 cut(s) 831, 1061
TscAI CASTG 4 cut(s) 105, 279, 430, 484
TseFI GTSAC 4 cut(s) 175, 212, 230, 510
TseI GCWGC 2 cut(s) 474, 748
Tsp45I GTSAC 4 cut(s) 175, 212, 230, 510
TspDTI ATGAA 1 cut(s) 816
TspGWI ACGGA 3 cut(s) 524, 671, 997
TspRI CASTG 4 cut(s) 105, 279, 430, 484
Vha464I CTTAAG 1 cut(s) 830
VpaK11BI GGWCC 3 cut(s) 603, 643, 1113
XapI RAATTY 2 cut(s) 757, 1035
XceI RCATGY 2 cut(s) 238, 505
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.