Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006493

Physical Location & Seq

Genomic Coordinates Reverse (-)

37205908 .. 37210020

Gene Structure 4113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00112210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGAAATGGAGGCAGACTCTCAGGAAAGAGAAGCTCTCCACCATGAAGCCCAGAACAAAAAGGAGAAGTTTTCAGTAAAGGGTATCTGGGATTTGCTATGGTCTCCCATAAATTGGTTCAAAATGCTCAGTAGTGAGTTGCATTGGAGCTTTGTGATCAGCGTGGTCATAGTTTACGGTATCAGTCAGGGTCTGAGTATGGGATTGAGTAGAATTAGCATACAGTATTACTTGAAAGATGAGCAGAAAGTGCAGCCCTCTGAGGCCCAAGTGTACCTGGGAATCATTCAAATTCCATGGATGGTTAAACCACTTTGGGGTCTTTTCACTGATACTCTTCCTATTCTTGGGTACCGCAGAAAGCCTTACTTTGTTTTTGCTGGTGTAATTGGGGTTGTCTCCATGCTTGTGCTATCACTGGACAAGAAATTAGATCTTACAATGTCCCTGTTGTCCCTGATGGTGGGGAGTGCTGGAGTAGCAATAGCAGATGTGACAATTGATGCTTGTGTTACAGAAAACAGTATTAGTCACCCATCCCTTGCTGGTGACATGCAAAGCTTGTGTGGACTGACCTCTTCAGTAGGGGCACTGGTGGGATTCTCACTTAGTGGATTTTTCGTTCACCTATTAGGGCCTAAGGGTGTGTTTGGATTGCTCAGCATTCCTCCGGGGCTGGTCATTTTCGTTGGGATGATGCTTAGGGAATCCCATTTGCACAGCTTTTCTCATAGACGGGAGGTTGTTGGGTCCATATTCTCTATTGGTGCTCTTGGCTCCCTTTTTGGGGTCCTCCTCTACCAAAACTTCTTGAAAAGTTACCCTTTCCGTGATGTGCTTTTCTGGACTCAGTTACTCTATGGCATATCAGGATTGCTAGACTTGGTATTCGTGTTGCGCATAAATTTGAAACTCGGTTTACCAGACTATCTTTTTGTTGTGATTGATGAAGCAGTTTCTCAGATGATTGGGCGTCTTAAGTGGATGCCTCTTCTTGTACTTAGTTCAAAACTCTGCCCTGTGGGTATAGAAGGCACTTTCTTTGCTTTGCTCATGTCCATTGATCATGTTGGGATTCTCTCATCTACTTGGGCTGGAGGCCTCTTACTCCACATCTTGAATATCACACGGACACAATTTGAAAATCTTTGGATGGCCATTTTGATTCGGAGCATATTGAGAATTTTACCAATTGCACTGCTTTTCTTAATACCTCGAACTGATCCGAACTCCTCCATTCTTCCATCTGAGATGTTGAGGACCAAAAAAGGTGATGATCTTGAGTCTGAAAATCTTGAAATGGCCTCCCTTGTCAATGGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

441

Amino Acids

48.98

Weight (kDa)

6.37

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	61 - 235	1.5e-07	Major Facilitator Superfamily
BT1	PF03092	63 - 240	3.6e-48	BT1 family
BT1	PF03092	246 - 409	2.7e-55	BT1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79710 AT1G79710 AT1G79710
fragaria_vesca	FvH4_6g28210 FvH4_6g28210
malus_domestica	MD09G1228300.v1.1 MD17G1226600.v1.1
prunus_persica	Prupe.3G104000_v2.0.a1 Prupe.3G104000_v2.0.a1
pyrus_communis	pycom09g14730 pycom17g23000
rosa_chinensis	RchiOBHm_Chr2g0132271
rosa_laevigata	RLG00000019242
rosa_multiflora	Rmu_co8174094.1_g000001 Rmu_sc0002403.1_g000007
rosa_roxburghii	Rroxscaffold_1G00012850 Rroxscaffold_2G00102370 Rroxscaffold_2G00112210 Rroxscaffold_3G00267220 Rroxscaffold_3G00267230
rosa_rugosa	Rorug02G0303300
rosa_samantha	Rh2AG356300 Rh2BG362700 Rh2CG339800 Rh2DG379600
rosa_wichuraiana	Rw2G028970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	899
Acc65I	GGTACC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	351
AccB7I	CCANNNNNTGG	1 cut(s)	114
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	1 cut(s)	1217
AcoI	YGGCCR	1 cut(s)	1155
AcsI	RAATTY	3 cut(s)	291, 904, 1182
AcuI	CTGAAG	1 cut(s)	564
AcyI	GRCGYC	1 cut(s)	973
AdeI	CACNNNGTG	1 cut(s)	611
AfaI	GTAC	3 cut(s)	275, 353, 999
AfiI	CCNNNNNNNGG	6 cut(s)	114, 317, 347, 463, 786, 787
AflII	CTTAAG	1 cut(s)	977
AgsI	TTSAA	9 cut(s)	121, 235, 290, 814, 910, 1008, 1120, 1142, 1298
AjnI	CCWGG	1 cut(s)	276
AloI	GAACNNNNNNTCC	2 cut(s)	606, 638
AluBI	AGCT	4 cut(s)	35, 150, 561, 723
AluI	AGCT	4 cut(s)	35, 150, 561, 723
Alw21I	GWGCWC	1 cut(s)	772
Alw26I	GTCTC	2 cut(s)	108, 403
AlwI	GGATC	1 cut(s)	1217
AlwNI	CAGNNNCTG	1 cut(s)	193
AoxI	GGCC	5 cut(s)	264, 635, 1099, 1155, 1302
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	3 cut(s)	291, 904, 1182
ArsI	GACNNNNNNTTYG	4 cut(s)	872, 904, 917, 949
Asp718I	GGTACC	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	900
AspS9I	GGNCC	5 cut(s)	265, 635, 750, 790, 1260
AsuC2I	CCSGG	1 cut(s)	672
AsuHPI	GGTGA	4 cut(s)	524, 560, 617, 1283
AvaII	GGWCC	3 cut(s)	750, 790, 1260
AxyI	CCTNAGG	1 cut(s)	639
BaeGI	GKGCMC	1 cut(s)	592
BalI	TGGCCA	1 cut(s)	1157
BanI	GGYRCC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	772
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	5 cut(s)	295, 454, 544, 1147, 1252
BciT130I	CCWGG	1 cut(s)	278
BclI	TGATCA	2 cut(s)	156, 1063
BcnI	CCSGG	1 cut(s)	672
BcoDI	GTCTC	2 cut(s)	108, 403
BfaI	CTAG	1 cut(s)	878
BfrI	CTTAAG	1 cut(s)	977
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	1 cut(s)	254
BlpI	GCTNAGC	1 cut(s)	659
BlsI	GCNGC	1 cut(s)	255
Bme1390I	CCNGG	2 cut(s)	278, 672
Bme18I	GGWCC	3 cut(s)	750, 790, 1260
BmgT120I	GGNCC	5 cut(s)	265, 635, 750, 790, 1260
BmiI	GGNNCC	4 cut(s)	353, 751, 778, 791
BmrFI	CCNGG	2 cut(s)	278, 672
BmsI	GCATC	3 cut(s)	493, 687, 975
BplI	GAGNNNNNCTC	3 cut(s)	34, 21, 53
BpmI	CTGGAG	2 cut(s)	495, 1116
Bpu10I	CCTNAGC	1 cut(s)	701
Bpu1102I	GCTNAGC	1 cut(s)	659
BpuEI	CTTGAG	1 cut(s)	1301
BpuMI	CCSGG	1 cut(s)	672
BsaHI	GRCGYC	1 cut(s)	973
BsaI	GGTCTC	1 cut(s)	108
BsaJI	CCNNGG	3 cut(s)	277, 296, 671
Bsc4I	CCNNNNNNNGG	6 cut(s)	114, 317, 347, 463, 786, 787
Bse1I	ACTGG	2 cut(s)	423, 597
Bse21I	CCTNAGG	1 cut(s)	639
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	3 cut(s)	277, 296, 671
BseGI	GGATG	5 cut(s)	306, 536, 699, 990, 1158
BseLI	CCNNNNNNNGG	6 cut(s)	114, 317, 347, 463, 786, 787
BseMII	CTCAG	8 cut(s)	35, 142, 185, 252, 673, 863, 974, 1239
BseNI	ACTGG	2 cut(s)	423, 597
BseRI	GAGGAG	2 cut(s)	785, 1222
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	1 cut(s)	265
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	5 cut(s)	266, 637, 1101, 1157, 1304
BshNI	GGYRCC	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	772
BsiSI	CCGG	1 cut(s)	671
BslFI	GGGAC	2 cut(s)	430, 439
BslI	CCNNNNNNNGG	6 cut(s)	114, 317, 347, 463, 786, 787
BsmAI	GTCTC	2 cut(s)	108, 403
BsmFI	GGGAC	2 cut(s)	430, 439
BsmI	GAATGC	1 cut(s)	663
BsnI	GGCC	5 cut(s)	266, 637, 1101, 1157, 1304
Bso31I	GGTCTC	1 cut(s)	108
Bsp1286I	GDGCHC	2 cut(s)	592, 772
Bsp143I	GATC	5 cut(s)	156, 433, 1063, 1222, 1276
Bsp1720I	GCTNAGC	1 cut(s)	659
Bsp19I	CCATGG	1 cut(s)	296
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	5 cut(s)	266, 637, 1101, 1157, 1304
BspCNI	CTCAG	8 cut(s)	34, 141, 186, 253, 672, 862, 973, 1240
BspLI	GGNNCC	4 cut(s)	353, 751, 778, 791
BspPI	GGATC	1 cut(s)	1217
BspT107I	GGYRCC	1 cut(s)	351
BspTI	CTTAAG	1 cut(s)	977
BspTNI	GGTCTC	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	423, 597
BssECI	CCNNGG	3 cut(s)	277, 296, 671
BssMI	GATC	5 cut(s)	156, 433, 1063, 1222, 1276
BssNI	GRCGYC	1 cut(s)	973
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	3 cut(s)	179, 225, 524
Bst6I	CTCTTC	3 cut(s)	342, 583, 996
BstACI	GRCGYC	1 cut(s)	973
BstAFI	CTTAAG	1 cut(s)	977
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstDSI	CCRYGG	1 cut(s)	296
BstF5I	GGATG	5 cut(s)	306, 536, 699, 990, 1158
BstHHI	GCGC	1 cut(s)	900
BstKTI	GATC	5 cut(s)	159, 436, 1066, 1225, 1279
BstMAI	GTCTC	2 cut(s)	108, 403
BstMBI	GATC	5 cut(s)	156, 433, 1063, 1222, 1276
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 479
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	2 cut(s)	276, 670
BstSLI	GKGCMC	1 cut(s)	592
BstV1I	GCAGC	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
Bsu36I	CCTNAGG	1 cut(s)	639
BsuRI	GGCC	5 cut(s)	266, 637, 1101, 1157, 1304
BtgI	CCRYGG	1 cut(s)	296
BtsCI	GGATG	5 cut(s)	306, 536, 699, 990, 1158
BtsI	GCAGTG	1 cut(s)	1196
BtsIMutI	CAGTG	4 cut(s)	327, 416, 590, 1196
CaiI	CAGNNNCTG	1 cut(s)	193
CfoI	GCGC	1 cut(s)	900
Cfr13I	GGNCC	5 cut(s)	265, 635, 750, 790, 1260
CseI	GACGC	1 cut(s)	962
Csp6I	GTAC	3 cut(s)	274, 352, 998
CviAII	CATG	6 cut(s)	44, 297, 403, 553, 1054, 1067
CviQI	GTAC	3 cut(s)	274, 352, 998
DpnI	GATC	5 cut(s)	158, 435, 1065, 1224, 1278
DpnII	GATC	5 cut(s)	156, 433, 1063, 1222, 1276
DraIII	CACNNNGTG	1 cut(s)	611
EaeI	YGGCCR	1 cut(s)	1155
Eam1104I	CTCTTC	3 cut(s)	342, 583, 996
EarI	CTCTTC	3 cut(s)	342, 583, 996
Eco130I	CCWWGG	1 cut(s)	296
Eco147I	AGGCCT	1 cut(s)	1101
Eco31I	GGTCTC	1 cut(s)	108
Eco47I	GGWCC	3 cut(s)	750, 790, 1260
Eco57I	CTGAAG	1 cut(s)	564
Eco81I	CCTNAGG	1 cut(s)	639
EcoO109I	RGGNCCY	2 cut(s)	635, 790
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	6 cut(s)	47, 300, 406, 556, 1057, 1070
FalI	AAGNNNNNCTT	4 cut(s)	353, 385, 808, 840
FaqI	GGGAC	2 cut(s)	430, 439
FatI	CATG	6 cut(s)	43, 296, 402, 552, 1053, 1066
FbaI	TGATCA	2 cut(s)	156, 1063
Fnu4HI	GCNGC	1 cut(s)	254
FokI	GGATG	5 cut(s)	313, 523, 706, 997, 1165
Fsp4HI	GCNGC	1 cut(s)	254
FspBI	CTAG	1 cut(s)	878
FspI	TGCGCA	1 cut(s)	899
GlaI	GCGC	1 cut(s)	899
GluI	GCNGC	1 cut(s)	254
GsuI	CTGGAG	2 cut(s)	495, 1116
HaeIII	GGCC	5 cut(s)	266, 637, 1101, 1157, 1304
HapII	CCGG	1 cut(s)	671
HgaI	GACGC	1 cut(s)	962
HhaI	GCGC	1 cut(s)	900
Hin1I	GRCGYC	1 cut(s)	973
Hin1II	CATG	6 cut(s)	47, 300, 406, 556, 1057, 1070
Hin6I	GCGC	1 cut(s)	898
HinP1I	GCGC	1 cut(s)	898
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	8 cut(s)	17, 282, 600, 707, 847, 1075, 1165, 1283
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	4 cut(s)	524, 560, 617, 1283
Hpy166II	GTNNAC	5 cut(s)	175, 274, 569, 625, 920
Hpy188I	TCNGA	8 cut(s)	195, 262, 963, 1170, 1227, 1249, 1288, 1325
Hpy188III	TCNNGA	7 cut(s)	23, 811, 844, 870, 1117, 1280, 1295
Hpy8I	GTNNAC	5 cut(s)	175, 274, 569, 625, 920
HpyAV	CCTTC	1 cut(s)	1025
HpyCH4III	ACNGT	3 cut(s)	179, 225, 524
HpyCH4V	TGCA	5 cut(s)	142, 253, 556, 718, 1196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 479
Hsp92I	GRCGYC	1 cut(s)	973
Hsp92II	CATG	6 cut(s)	47, 300, 406, 556, 1057, 1070
HspAI	GCGC	1 cut(s)	898
KpnI	GGTACC	1 cut(s)	355
Ksp22I	TGATCA	2 cut(s)	156, 1063
Kzo9I	GATC	5 cut(s)	156, 433, 1063, 1222, 1276
LmnI	GCTCC	3 cut(s)	147, 782, 1170
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	3 cut(s)	493, 687, 975
MaeI	CTAG	1 cut(s)	878
MaeIII	GTNAC	6 cut(s)	493, 511, 530, 548, 818, 852
MalI	GATC	5 cut(s)	158, 435, 1065, 1224, 1278
MboI	GATC	5 cut(s)	156, 433, 1063, 1222, 1276
MboII	GAAGA	4 cut(s)	329, 570, 983, 1232
MfeI	CAATTG	2 cut(s)	498, 1191
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	2 cut(s)	592, 772
MlsI	TGGCCA	1 cut(s)	1157
MluNI	TGGCCA	1 cut(s)	1157
MlyI	GAGTC	3 cut(s)	11, 841, 1292
Mox20I	TGGCCA	1 cut(s)	1157
MscI	TGGCCA	1 cut(s)	1157
MseI	TTAA	3 cut(s)	306, 978, 1208
MslI	CAYNNNNRTG	1 cut(s)	407
Msp20I	TGGCCA	1 cut(s)	1157
MspCI	CTTAAG	1 cut(s)	977
MspI	CCGG	1 cut(s)	671
MspR9I	CCNGG	2 cut(s)	278, 672
MunI	CAATTG	2 cut(s)	498, 1191
Mva1269I	GAATGC	1 cut(s)	663
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	250, 479
NciI	CCSGG	1 cut(s)	672
NcoI	CCATGG	1 cut(s)	296
NdeII	GATC	5 cut(s)	156, 433, 1063, 1222, 1276
NlaIII	CATG	6 cut(s)	47, 300, 406, 556, 1057, 1070
NlaIV	GGNNCC	4 cut(s)	353, 751, 778, 791
NmuCI	GTSAC	3 cut(s)	493, 530, 548
NsbI	TGCGCA	1 cut(s)	899
NspI	RCATGY	1 cut(s)	556
PceI	AGGCCT	1 cut(s)	1101
PctI	GAATGC	1 cut(s)	663
PfeI	GAWTC	5 cut(s)	282, 600, 707, 1075, 1165
PflMI	CCANNNNNTGG	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	255
PleI	GAGTC	3 cut(s)	11, 841, 1291
PpsI	GAGTC	3 cut(s)	11, 841, 1291
PpuMI	RGGWCCY	1 cut(s)	790
Psp5II	RGGWCCY	1 cut(s)	790
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	4 cut(s)	353, 751, 778, 791
PspPI	GGNCC	5 cut(s)	265, 635, 750, 790, 1260
PspPPI	RGGWCCY	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	3 cut(s)	275, 353, 999
RsaNI	GTAC	3 cut(s)	274, 352, 998
RseI	CAYNNNNRTG	1 cut(s)	407
SaqAI	TTAA	3 cut(s)	306, 978, 1208
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	5 cut(s)	156, 433, 1063, 1222, 1276
Sau96I	GGNCC	5 cut(s)	265, 635, 750, 790, 1260
SchI	GAGTC	3 cut(s)	11, 841, 1292
ScrFI	CCNGG	2 cut(s)	278, 672
SduI	GDGCHC	2 cut(s)	592, 772
SfaNI	GCATC	3 cut(s)	493, 687, 975
SinI	GGWCC	3 cut(s)	750, 790, 1260
SmiMI	CAYNNNNRTG	1 cut(s)	407
SmlI	CTYRAG	2 cut(s)	977, 1280
SmoI	CTYRAG	2 cut(s)	977, 1280
SseBI	AGGCCT	1 cut(s)	1101
SsiI	CCGC	1 cut(s)	355
SspMI	CTAG	1 cut(s)	878
StuI	AGGCCT	1 cut(s)	1101
StyD4I	CCNGG	2 cut(s)	276, 670
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	3 cut(s)	179, 225, 524
TaqI	TCGA	1 cut(s)	1216
TatI	WGTACW	1 cut(s)	997
TfiI	GAWTC	5 cut(s)	282, 600, 707, 1075, 1165
Tru1I	TTAA	3 cut(s)	306, 978, 1208
Tru9I	TTAA	3 cut(s)	306, 978, 1208
TscAI	CASTG	4 cut(s)	334, 423, 597, 1203
TseFI	GTSAC	3 cut(s)	493, 530, 548
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	3 cut(s)	493, 530, 548
TspDTI	ATGAA	2 cut(s)	60, 963
TspGWI	ACGGA	2 cut(s)	818, 1144
TspRI	CASTG	4 cut(s)	334, 423, 597, 1203
Van91I	CCANNNNNTGG	1 cut(s)	114
Vha464I	CTTAAG	1 cut(s)	977
VpaK11BI	GGWCC	3 cut(s)	750, 790, 1260
XapI	RAATTY	3 cut(s)	291, 904, 1182
XceI	RCATGY	1 cut(s)	556
XspI	CTAG	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.